RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 CARD11Q9BXL7 1154 aa13.66□□□□□ -0.22
CLIP1-209ENST00000537178 SENP3Q9H4L4 574 aaPredicted RBP13.66□□□□□ -0.22
CLIP1-209ENST00000537178 L1TD1Q5T7N2 865 aaKnown RBP13.65□□□□□ -0.22
CLIP1-209ENST00000537178 FRAT1Q92837 279 aaPredicted RBP13.65□□□□□ -0.22
CLIP1-209ENST00000537178 TSHZ2Q9NRE2 1034 aa13.65□□□□□ -0.23
CLIP1-209ENST00000537178 WDR97A6NE52 1622 aa13.64□□□□□ -0.23
CLIP1-209ENST00000537178 NPHP1O15259 732 aa13.64□□□□□ -0.23
CLIP1-209ENST00000537178 LRRIQ1Q96JM4 1722 aa13.63□□□□□ -0.23
CLIP1-209ENST00000537178 CFTRP13569 1480 aa13.63□□□□□ -0.23
CLIP1-209ENST00000537178 NCAPD3P42695 1498 aa13.63□□□□□ -0.23
CLIP1-209ENST00000537178 KCNH8Q96L42 1107 aa13.63□□□□□ -0.23
CLIP1-209ENST00000537178 PNNQ9H307 717 aaKnown RBP13.62□□□□□ -0.23
CLIP1-209ENST00000537178 NAP1L2Q9ULW6 460 aaPredicted RBP13.62□□□□□ -0.23
CLIP1-209ENST00000537178 RTN4Q9NQC3 1192 aaKnown RBP13.62□□□□□ -0.23
CLIP1-209ENST00000537178 TAOK2Q9UL54 1235 aa13.62□□□□□ -0.23
CLIP1-209ENST00000537178 HSCBQ8IWL3 235 aa13.62□□□□□ -0.23
CLIP1-209ENST00000537178 GOLGA2Q08379 1002 aa13.61□□□□□ -0.23
CLIP1-209ENST00000537178 CFAP44Q96MT7 982 aa13.61□□□□□ -0.23
CLIP1-209ENST00000537178 MSNP26038 577 aaKnown RBP13.6□□□□□ -0.23
CLIP1-209ENST00000537178 POGKQ9P215 609 aa13.6□□□□□ -0.23
CLIP1-209ENST00000537178 SENP3-EIF4A1A0A087X0R7 540 aa13.6□□□□□ -0.23
CLIP1-209ENST00000537178 MCCP23508 829 aa13.59□□□□□ -0.23
CLIP1-209ENST00000537178 LMOD2Q6P5Q4 547 aa13.58□□□□□ -0.23
CLIP1-209ENST00000537178 CFDP1Q9UEE9 299 aaPredicted RBP13.57□□□□□ -0.24
CLIP1-209ENST00000537178 ARID4BQ4LE39 1312 aaPredicted RBP13.57□□□□□ -0.24
CLIP1-209ENST00000537178 CCNB3Q8WWL7 1395 aa13.57□□□□□ -0.24
CLIP1-209ENST00000537178 U2SURPO15042 1029 aaKnown RBP13.56□□□□□ -0.24
CLIP1-209ENST00000537178 DRC7Q8IY82 874 aa13.55□□□□□ -0.24
CLIP1-209ENST00000537178 LRRC9Q6ZRR7 1453 aa13.54□□□□□ -0.24
CLIP1-209ENST00000537178 DEKP35659 375 aaKnown RBP13.54□□□□□ -0.24
CLIP1-209ENST00000537178 RAB3GAP2Q9H2M9 1393 aa13.52□□□□□ -0.24
CLIP1-209ENST00000537178 PCF11O94913 1555 aaKnown RBP13.52□□□□□ -0.25
CLIP1-209ENST00000537178 CLSTN1O94985 981 aa13.51□□□□□ -0.25
CLIP1-209ENST00000537178 RBM19Q9Y4C8 960 aaKnown RBP13.51□□□□□ -0.25
CLIP1-209ENST00000537178 B4GALNT3Q6L9W6 998 aa13.5□□□□□ -0.25
CLIP1-209ENST00000537178 PRKCSHP14314 528 aaPredicted RBP13.5□□□□□ -0.25
CLIP1-209ENST00000537178 PHLDB1Q86UU1 1377 aa13.5□□□□□ -0.25
CLIP1-209ENST00000537178 PTMSP20962 102 aa13.5□□□□□ -0.25
CLIP1-209ENST00000537178 IGF1RP08069 1367 aa13.49□□□□□ -0.25
CLIP1-209ENST00000537178 KIAA2012Q0VF49 1180 aa13.49□□□□□ -0.25
CLIP1-209ENST00000537178 CC2D1BQ5T0F9 858 aaKnown RBP13.49□□□□□ -0.25
CLIP1-209ENST00000537178 GNL2Q13823 731 aaKnown RBP13.49□□□□□ -0.25
CLIP1-209ENST00000537178 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.49□□□□□ -0.25
CLIP1-209ENST00000537178 DENND4BO75064 1496 aaPredicted RBP13.48□□□□□ -0.25
CLIP1-209ENST00000537178 TMF1P82094 1093 aa13.48□□□□□ -0.25
CLIP1-209ENST00000537178 KIF27Q86VH2 1401 aa13.48□□□□□ -0.25
CLIP1-209ENST00000537178 GBP4Q96PP9 640 aa13.47□□□□□ -0.25
CLIP1-209ENST00000537178 KIAA1211Q6ZU35 1233 aa13.47□□□□□ -0.25
CLIP1-209ENST00000537178 HTATSF1O43719 755 aaKnown RBP13.47□□□□□ -0.25
CLIP1-209ENST00000537178 NCBP3Q53F19 620 aaKnown RBP13.47□□□□□ -0.25
CLIP1-209ENST00000537178 ISY1Q9ULR0 285 aaKnown RBP13.46□□□□□ -0.26
CLIP1-209ENST00000537178 IPO8O15397 1037 aaKnown RBP13.45□□□□□ -0.26
CLIP1-209ENST00000537178 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.44□□□□□ -0.26
CLIP1-209ENST00000537178 HDGFP51858 240 aaKnown RBP13.44□□□□□ -0.26
CLIP1-209ENST00000537178 AQRO60306 1485 aaKnown RBP eCLIP13.43□□□□□ -0.267e-7■■■■■ 48.1
CLIP1-209ENST00000537178 SYAP1Q96A49 352 aaPredicted RBP13.43□□□□□ -0.26
CLIP1-209ENST00000537178 RTF1Q92541 710 aaKnown RBP13.43□□□□□ -0.26
CLIP1-209ENST00000537178 CTTNBP2Q8WZ74 1663 aa13.43□□□□□ -0.26
CLIP1-209ENST00000537178 CCDC34Q96HJ3 373 aa13.42□□□□□ -0.26
CLIP1-209ENST00000537178 SETD5Q9C0A6 1442 aa13.42□□□□□ -0.26
CLIP1-209ENST00000537178 ARHGEF11O15085 1522 aa13.42□□□□□ -0.26
CLIP1-209ENST00000537178 SNAPC4Q5SXM2 1469 aa13.42□□□□□ -0.26
CLIP1-209ENST00000537178 MORC1Q86VD1 984 aa13.42□□□□□ -0.26
CLIP1-209ENST00000537178 NOC3LQ8WTT2 800 aaKnown RBP13.42□□□□□ -0.26
CLIP1-209ENST00000537178 SPRYD3Q8NCJ5 442 aa13.41□□□□□ -0.26
CLIP1-209ENST00000537178 CHMP4AQ9BY43 222 aa13.4□□□□□ -0.26
CLIP1-209ENST00000537178 TIMELESSQ9UNS1 1208 aa13.4□□□□□ -0.26
CLIP1-209ENST00000537178 SAMD9Q5K651 1589 aa13.4□□□□□ -0.26
CLIP1-209ENST00000537178 SIN3AQ96ST3 1273 aa13.4□□□□□ -0.26
CLIP1-209ENST00000537178 POLR1AO95602 1720 aaPredicted RBP13.4□□□□□ -0.27
CLIP1-209ENST00000537178 CCER2I3L3R5 266 aa13.39□□□□□ -0.27
CLIP1-209ENST00000537178 TPM4P67936 248 aa13.39□□□□□ -0.27
CLIP1-209ENST00000537178 SRPK2P78362 688 aaKnown RBP13.39□□□□□ -0.27
CLIP1-209ENST00000537178 PTPRKQ15262 1439 aa13.39□□□□□ -0.27
CLIP1-209ENST00000537178 CALD1Q05682 793 aaKnown RBP13.39□□□□□ -0.27
CLIP1-209ENST00000537178 AMER1Q5JTC6 1135 aaPredicted RBP13.39□□□□□ -0.27
CLIP1-209ENST00000537178 TNNT3P45378 269 aaPredicted RBP13.38□□□□□ -0.27
CLIP1-209ENST00000537178 FGD5Q6ZNL6 1462 aa13.38□□□□□ -0.27
CLIP1-209ENST00000537178 RWDD1Q9H446 243 aaPredicted RBP13.38□□□□□ -0.27
CLIP1-209ENST00000537178 DCAF11Q8TEB1 546 aa13.38□□□□□ -0.27
CLIP1-209ENST00000537178 PTPN23Q9H3S7 1636 aa13.37□□□□□ -0.27
CLIP1-209ENST00000537178 FYCO1Q9BQS8 1478 aa13.36□□□□□ -0.27
CLIP1-209ENST00000537178 KANK1Q14678 1352 aa13.36□□□□□ -0.27
CLIP1-209ENST00000537178 SOX12O15370 315 aa13.36□□□□□ -0.27
CLIP1-209ENST00000537178 APBB1O00213 710 aa13.36□□□□□ -0.27
CLIP1-209ENST00000537178 GOLGA6L1Q8N7Z2 621 aa13.35□□□□□ -0.27
CLIP1-209ENST00000537178 HDAC5Q9UQL6 1122 aa13.35□□□□□ -0.27
CLIP1-209ENST00000537178 USP35Q9P2H5 1018 aa13.35□□□□□ -0.27
CLIP1-209ENST00000537178 EFCAB5A4FU69 1503 aa13.35□□□□□ -0.27
CLIP1-209ENST00000537178 CC2D2AQ9P2K1 1620 aa13.34□□□□□ -0.27
CLIP1-209ENST00000537178 GCC2Q8IWJ2 1684 aa13.34□□□□□ -0.27
CLIP1-209ENST00000537178 TCERG1O14776 1098 aaKnown RBP13.34□□□□□ -0.27
CLIP1-209ENST00000537178 HDGFL2Q7Z4V5 671 aaPredicted RBP13.33□□□□□ -0.28
CLIP1-209ENST00000537178 GZF1Q9H116 711 aaPredicted RBP13.33□□□□□ -0.28
CLIP1-209ENST00000537178 CSPP1Q1MSJ5 1256 aa13.32□□□□□ -0.28
CLIP1-209ENST00000537178 SLKQ9H2G2 1235 aaPredicted RBP13.32□□□□□ -0.28
CLIP1-209ENST00000537178 NCOA2Q15596 1464 aa13.32□□□□□ -0.28
CLIP1-209ENST00000537178 A0A0U1RQG5 324 aaPredicted RBP13.32□□□□□ -0.28
CLIP1-209ENST00000537178 ABCA5Q8WWZ7 1642 aa13.32□□□□□ -0.28
CLIP1-209ENST00000537178 MSH5O43196 834 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms