RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 BBXQ8WY36 941 aaPredicted RBP6.96□□□□□ -1.3
CD44-234ENST00000531873 CABP2Q9NPB3 220 aa6.95□□□□□ -1.3
CD44-234ENST00000531873 VSIG10Q8N0Z9 540 aa6.93□□□□□ -1.3
CD44-234ENST00000531873 GPR153Q6NV75 609 aa6.91□□□□□ -1.3
CD44-234ENST00000531873 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.91□□□□□ -1.3
CD44-234ENST00000531873 PAXIP1Q6ZW49 1069 aaPredicted RBP6.9□□□□□ -1.3
CD44-234ENST00000531873 CIZ1Q9ULV3 898 aaPredicted RBP6.9□□□□□ -1.3
CD44-234ENST00000531873 KDM2AQ9Y2K7 1162 aa6.9□□□□□ -1.3
CD44-234ENST00000531873 TMEM92Q6UXU6 159 aa6.88□□□□□ -1.31
CD44-234ENST00000531873 CFAP44Q96MT7 982 aa6.88□□□□□ -1.31
CD44-234ENST00000531873 RNF25Q96BH1 459 aaPredicted RBP6.87□□□□□ -1.31
CD44-234ENST00000531873 BCANQ96GW7 911 aa6.87□□□□□ -1.31
CD44-234ENST00000531873 MICALL2Q8IY33 904 aa6.86□□□□□ -1.31
CD44-234ENST00000531873 CHGAP10645 457 aaKnown RBP6.85□□□□□ -1.31
CD44-234ENST00000531873 EFCAB3Q8N7B9 438 aa6.84□□□□□ -1.31
CD44-234ENST00000531873 TRIM41Q8WV44 630 aa6.84□□□□□ -1.31
CD44-234ENST00000531873 SPRYD3Q8NCJ5 442 aa6.83□□□□□ -1.32
CD44-234ENST00000531873 TSHZ2Q9NRE2 1034 aa6.83□□□□□ -1.32
CD44-234ENST00000531873 LSM11P83369 360 aaKnown RBP eCLIP6.82□□□□□ -1.32
CD44-234ENST00000531873 ANKRD13DQ6ZTN6 518 aa6.82□□□□□ -1.32
CD44-234ENST00000531873 HS6ST3Q8IZP7 471 aa6.82□□□□□ -1.32
CD44-234ENST00000531873 ZNF316A6NFI3 1004 aaPredicted RBP6.81□□□□□ -1.32
CD44-234ENST00000531873 ARSIQ5FYB1 569 aa6.81□□□□□ -1.32
CD44-234ENST00000531873 SOX12O15370 315 aa6.8□□□□□ -1.32
CD44-234ENST00000531873 DNAJC5Q9H3Z4 198 aa6.8□□□□□ -1.32
CD44-234ENST00000531873 PRKCSHP14314 528 aaPredicted RBP6.79□□□□□ -1.32
CD44-234ENST00000531873 TAOK2Q9UL54 1235 aa6.79□□□□□ -1.32
CD44-234ENST00000531873 PBX2P40425 430 aa6.78□□□□□ -1.32
CD44-234ENST00000531873 MS4A4AQ96JQ5 239 aa6.78□□□□□ -1.32
CD44-234ENST00000531873 PLA2G2EQ9NZK7 142 aa6.77□□□□□ -1.33
CD44-234ENST00000531873 NKX1-1Q15270 411 aaPredicted RBP6.76□□□□□ -1.33
CD44-234ENST00000531873 RIOK3O14730 519 aaKnown RBP6.75□□□□□ -1.33
CD44-234ENST00000531873 HCSTQ9UBK5 93 aa6.75□□□□□ -1.33
CD44-234ENST00000531873 KHSRPQ92945 711 aaKnown RBP eCLIP6.74□□□□□ -1.33
CD44-234ENST00000531873 POTEEQ6S8J3 1075 aa6.72□□□□□ -1.33
CD44-234ENST00000531873 PHF8Q9UPP1 1060 aa6.71□□□□□ -1.34
CD44-234ENST00000531873 GTPBP6O43824 516 aaPredicted RBP6.7□□□□□ -1.34
CD44-234ENST00000531873 KIF3CO14782 793 aa6.69□□□□□ -1.34
CD44-234ENST00000531873 VGFO15240 615 aaPredicted RBP6.69□□□□□ -1.34
CD44-234ENST00000531873 STK25O00506 426 aa6.68□□□□□ -1.34
CD44-234ENST00000531873 SLC34A2O95436 690 aa6.68□□□□□ -1.34
CD44-234ENST00000531873 TPRNQ4KMQ1 711 aa6.68□□□□□ -1.34
CD44-234ENST00000531873 NUDT7P0C024 238 aa6.67□□□□□ -1.34
CD44-234ENST00000531873 LHX6Q9UPM6 363 aa6.67□□□□□ -1.34
CD44-234ENST00000531873 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.66□□□□□ -1.34
CD44-234ENST00000531873 NLRP6P59044 892 aa6.66□□□□□ -1.34
CD44-234ENST00000531873 ADGRD1Q6QNK2 874 aa6.66□□□□□ -1.34
CD44-234ENST00000531873 FBXO22Q8NEZ5 403 aa6.66□□□□□ -1.34
CD44-234ENST00000531873 ZFP91Q96JP5 570 aaPredicted RBP6.66□□□□□ -1.34
CD44-234ENST00000531873 AXIN2Q9Y2T1 843 aa6.66□□□□□ -1.34
CD44-234ENST00000531873 BCL11BQ9C0K0 894 aaPredicted RBP6.65□□□□□ -1.34
CD44-234ENST00000531873 C2orf72A6NCS6 295 aa6.64□□□□□ -1.35
CD44-234ENST00000531873 TK2O00142 265 aa6.64□□□□□ -1.35
CD44-234ENST00000531873 ARHGAP33O14559 1287 aa6.64□□□□□ -1.35
CD44-234ENST00000531873 PCDHGA4Q9Y5G9 962 aa6.64□□□□□ -1.35
CD44-234ENST00000531873 PSDA5PKW4 1024 aaPredicted RBP6.63□□□□□ -1.35
CD44-234ENST00000531873 HRO43593 1189 aa6.63□□□□□ -1.35
CD44-234ENST00000531873 RGS20O76081 388 aa6.63□□□□□ -1.35
CD44-234ENST00000531873 STK24Q9Y6E0 443 aa6.62□□□□□ -1.35
CD44-234ENST00000531873 KDM4FA0A1W2PPD8 638 aa6.6□□□□□ -1.35
CD44-234ENST00000531873 NBR1Q14596 966 aa6.59□□□□□ -1.35
CD44-234ENST00000531873 IFFO2Q5TF58 517 aa6.59□□□□□ -1.35
CD44-234ENST00000531873 MFRPQ9BY79 579 aa6.58□□□□□ -1.36
CD44-234ENST00000531873 DMRTA1Q5VZB9 504 aa6.56□□□□□ -1.36
CD44-234ENST00000531873 RYDENQ9NUL5 291 aaKnown RBP6.56□□□□□ -1.36
CD44-234ENST00000531873 PTCD2Q8WV60 388 aaKnown RBP6.54□□□□□ -1.36
CD44-234ENST00000531873 KCTD12Q96CX2 325 aaKnown RBP6.54□□□□□ -1.36
CD44-234ENST00000531873 PSEN2P49810 448 aa6.53□□□□□ -1.36
CD44-234ENST00000531873 TMC2Q8TDI7 906 aa6.53□□□□□ -1.36
CD44-234ENST00000531873 CADPS2Q86UW7 1296 aa6.52□□□□□ -1.37
CD44-234ENST00000531873 IRX2Q9BZI1 471 aaPredicted RBP6.52□□□□□ -1.37
CD44-234ENST00000531873 PPP4R3BQ5MIZ7 849 aa6.5□□□□□ -1.37
CD44-234ENST00000531873 STAC3Q96MF2 364 aa6.5□□□□□ -1.37
CD44-234ENST00000531873 A0A0G2JS52 829 aa6.49□□□□□ -1.37
CD44-234ENST00000531873 VPS9D1Q9Y2B5 631 aa6.48□□□□□ -1.37
CD44-234ENST00000531873 KCNV2Q8TDN2 545 aa6.47□□□□□ -1.37
CD44-234ENST00000531873 SLC4A5Q9BY07 1137 aa6.47□□□□□ -1.37
CD44-234ENST00000531873 P3H3Q8IVL6 736 aa6.46□□□□□ -1.38
CD44-234ENST00000531873 PTPN5P54829 565 aa6.45□□□□□ -1.38
CD44-234ENST00000531873 FOXK1P85037 733 aa6.45□□□□□ -1.38
CD44-234ENST00000531873 KCNH8Q96L42 1107 aa6.45□□□□□ -1.38
CD44-234ENST00000531873 BHMG1C9JSJ3 638 aaPredicted RBP6.44□□□□□ -1.38
CD44-234ENST00000531873 THSD4Q6ZMP0 1018 aa6.44□□□□□ -1.38
CD44-234ENST00000531873 KCNK17Q96T54 332 aa6.44□□□□□ -1.38
CD44-234ENST00000531873 TBC1D12O60347 775 aa6.43□□□□□ -1.38
CD44-234ENST00000531873 PPP1R37O75864 691 aa6.43□□□□□ -1.38
CD44-234ENST00000531873 PLPP6Q8IY26 295 aa6.42□□□□□ -1.38
CD44-234ENST00000531873 GPHNQ9NQX3 736 aaPredicted RBP6.41□□□□□ -1.38
CD44-234ENST00000531873 BCL2L12Q9HB09 334 aa6.4□□□□□ -1.38
CD44-234ENST00000531873 WDR70Q9NW82 654 aa6.39□□□□□ -1.39
CD44-234ENST00000531873 WNT2BQ93097 391 aa6.38□□□□□ -1.39
CD44-234ENST00000531873 ITGBL1O95965 494 aaPredicted RBP6.37□□□□□ -1.39
CD44-234ENST00000531873 DSG2Q14126 1118 aa6.37□□□□□ -1.39
CD44-234ENST00000531873 LMOD2Q6P5Q4 547 aa6.37□□□□□ -1.39
CD44-234ENST00000531873 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.37□□□□□ -1.39
CD44-234ENST00000531873 ZBED2Q9BTP6 218 aa6.37□□□□□ -1.39
CD44-234ENST00000531873 NCKAP5LQ9HCH0 1330 aa6.36□□□□□ -1.39
CD44-234ENST00000531873 OXER1Q8TDS5 423 aa6.36□□□□□ -1.39
CD44-234ENST00000531873 GOLGA8CPA6NN73 597 aa6.35□□□□□ -1.39
CD44-234ENST00000531873 MRPL50Q8N5N7 158 aaKnown RBP6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 152.4 ms