RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 AEBP2Q6ZN18 517 aaPredicted RBP16.21■□□□□ 0.19
CD44-234ENST00000531873 CHIC1Q5VXU3 224 aa15.15■□□□□ 0.02
CD44-234ENST00000531873 SENP3Q9H4L4 574 aaPredicted RBP13.9□□□□□ -0.18
CD44-234ENST00000531873 PHF23Q9BUL5 403 aaPredicted RBP13.65□□□□□ -0.22
CD44-234ENST00000531873 FOXD1Q16676 465 aa12.98□□□□□ -0.33
CD44-234ENST00000531873 POTEDQ86YR6 584 aa12.59□□□□□ -0.39
CD44-234ENST00000531873 MSH5O43196 834 aa12.31□□□□□ -0.44
CD44-234ENST00000531873 PIAS4Q8N2W9 510 aaPredicted RBP12.01□□□□□ -0.49
CD44-234ENST00000531873 PLPPR3Q6T4P5 718 aa11.87□□□□□ -0.51
CD44-234ENST00000531873 PPP6R1Q9UPN7 881 aa11.86□□□□□ -0.51
CD44-234ENST00000531873 ADRA2BP18089 450 aa11.77□□□□□ -0.53
CD44-234ENST00000531873 DMRT2Q9Y5R5 561 aa10.97□□□□□ -0.65
CD44-234ENST00000531873 MAPK8IP2Q13387 824 aaPredicted RBP10.92□□□□□ -0.66
CD44-234ENST00000531873 SCAF1Q9H7N4 1312 aaKnown RBP10.83□□□□□ -0.68
CD44-234ENST00000531873 CACNB1Q02641 598 aaPredicted RBP10.73□□□□□ -0.69
CD44-234ENST00000531873 RNF39Q9H2S5 420 aa10.47□□□□□ -0.73
CD44-234ENST00000531873 HOXD11P31277 338 aaPredicted RBP10.45□□□□□ -0.74
CD44-234ENST00000531873 DCAF8L1A6NGE4 600 aa10.43□□□□□ -0.74
CD44-234ENST00000531873 PPP4R3CPQ6ZMV5 832 aa10.34□□□□□ -0.75
CD44-234ENST00000531873 C1QBPQ07021 282 aaKnown RBP10.31□□□□□ -0.76
CD44-234ENST00000531873 RNF216Q9NWF9 866 aaPredicted RBP10.27□□□□□ -0.77
CD44-234ENST00000531873 CNKSR2Q8WXI2 1034 aa10.25□□□□□ -0.77
CD44-234ENST00000531873 DNAJC5BQ9UF47 199 aa10.23□□□□□ -0.77
CD44-234ENST00000531873 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.88□□□□□ -0.83
CD44-234ENST00000531873 NCBP3Q53F19 620 aaKnown RBP9.85□□□□□ -0.83
CD44-234ENST00000531873 POTEHQ6S545 545 aa9.79□□□□□ -0.84
CD44-234ENST00000531873 NPM3O75607 178 aaKnown RBP9.69□□□□□ -0.86
CD44-234ENST00000531873 DSG3P32926 999 aa9.67□□□□□ -0.86
CD44-234ENST00000531873 U3KPZ7 1027 aaPredicted RBP9.67□□□□□ -0.86
CD44-234ENST00000531873 SPINK5Q9NQ38 1064 aaPredicted RBP9.6□□□□□ -0.87
CD44-234ENST00000531873 CAPN15O75808 1086 aa9.58□□□□□ -0.88
CD44-234ENST00000531873 APLP2Q06481 763 aa9.38□□□□□ -0.91
CD44-234ENST00000531873 SLC4A2P04920 1241 aa9.37□□□□□ -0.91
CD44-234ENST00000531873 ZNF219Q9P2Y4 722 aaPredicted RBP9.37□□□□□ -0.91
CD44-234ENST00000531873 TRHP20396 242 aaPredicted RBP9.34□□□□□ -0.91
CD44-234ENST00000531873 ABCB7O75027 752 aa9.31□□□□□ -0.92
CD44-234ENST00000531873 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.29□□□□□ -0.92
CD44-234ENST00000531873 HNRNPUL2Q1KMD3 747 aaKnown RBP9.29□□□□□ -0.92
CD44-234ENST00000531873 RBM42Q9BTD8 480 aaKnown RBP9.24□□□□□ -0.93
CD44-234ENST00000531873 SAMD1Q6SPF0 538 aaPredicted RBP9.21□□□□□ -0.94
CD44-234ENST00000531873 KCNA4P22459 653 aa9.19□□□□□ -0.94
CD44-234ENST00000531873 CHRDL2Q6WN34 429 aa9.16□□□□□ -0.94
CD44-234ENST00000531873 POLA2Q14181 598 aa9.04□□□□□ -0.96
CD44-234ENST00000531873 SP7Q8TDD2 431 aaPredicted RBP9.02□□□□□ -0.97
CD44-234ENST00000531873 MYCNP04198 464 aaPredicted RBP8.98□□□□□ -0.97
CD44-234ENST00000531873 AKT1S1Q96B36 256 aa8.96□□□□□ -0.98
CD44-234ENST00000531873 EHMT2Q96KQ7 1210 aa8.95□□□□□ -0.98
CD44-234ENST00000531873 PIP4P2Q8N4L2 257 aa8.87□□□□□ -0.99
CD44-234ENST00000531873 ZBTB12Q9Y330 459 aaPredicted RBP8.87□□□□□ -0.99
CD44-234ENST00000531873 REM2Q8IYK8 340 aaPredicted RBP8.86□□□□□ -0.99
CD44-234ENST00000531873 FXR2P51116 673 aaKnown RBP eCLIP8.79□□□□□ -1
CD44-234ENST00000531873 ATF5Q9Y2D1 282 aaPredicted RBP8.78□□□□□ -1
CD44-234ENST00000531873 HAX1O00165 279 aa8.77□□□□□ -1.01
CD44-234ENST00000531873 SLC4A1APQ9BWU0 796 aaKnown RBP8.77□□□□□ -1.01
CD44-234ENST00000531873 PITPNM1O00562 1244 aa8.75□□□□□ -1.01
CD44-234ENST00000531873 OSCARQ8IYS5 282 aa8.75□□□□□ -1.01
CD44-234ENST00000531873 CSRNP3Q8WYN3 585 aa8.72□□□□□ -1.01
CD44-234ENST00000531873 FOXD4L1Q9NU39 408 aa8.69□□□□□ -1.02
CD44-234ENST00000531873 EVX2Q03828 476 aa8.66□□□□□ -1.02
CD44-234ENST00000531873 SPDYE2BA6NHP3 402 aa8.56□□□□□ -1.04
CD44-234ENST00000531873 SPDYE6P0CI01 402 aa8.56□□□□□ -1.04
CD44-234ENST00000531873 SPDYE2Q495Y8 402 aa8.56□□□□□ -1.04
CD44-234ENST00000531873 C19orf67A6NJJ6 358 aa8.52□□□□□ -1.05
CD44-234ENST00000531873 ZBTB22O15209 634 aa8.51□□□□□ -1.05
CD44-234ENST00000531873 ATXN8OSP0DMR3 200 aa8.51□□□□□ -1.05
CD44-234ENST00000531873 PRKAR2AP13861 404 aaKnown RBP8.51□□□□□ -1.05
CD44-234ENST00000531873 SPDYE1Q8NFV5 336 aaPredicted RBP8.49□□□□□ -1.05
CD44-234ENST00000531873 GABBR2O75899 941 aa8.46□□□□□ -1.06
CD44-234ENST00000531873 FBLN2P98095 1184 aa8.46□□□□□ -1.06
CD44-234ENST00000531873 LHX8Q68G74 356 aa8.44□□□□□ -1.06
CD44-234ENST00000531873 SSUH2Q9Y2M2 353 aa8.43□□□□□ -1.06
CD44-234ENST00000531873 CLEC11AQ9Y240 323 aa8.42□□□□□ -1.06
CD44-234ENST00000531873 MKRN4PQ13434 485 aaPredicted RBP8.38□□□□□ -1.07
CD44-234ENST00000531873 ZNF692Q9BU19 519 aaPredicted RBP8.37□□□□□ -1.07
CD44-234ENST00000531873 CHADLQ6NUI6 762 aa8.31□□□□□ -1.08
CD44-234ENST00000531873 POTEIP0CG38 1075 aa8.29□□□□□ -1.08
CD44-234ENST00000531873 PRR29P0C7W0 189 aa8.28□□□□□ -1.08
CD44-234ENST00000531873 CLCN6P51797 869 aa8.28□□□□□ -1.08
CD44-234ENST00000531873 PABPN1Q86U42 306 aaKnown RBP eCLIP8.23□□□□□ -1.09
CD44-234ENST00000531873 CD44P16070 742 aaKnown RBP8.22□□□□□ -1.09
CD44-234ENST00000531873 FARP1Q9Y4F1 1045 aaPredicted RBP8.2□□□□□ -1.1
CD44-234ENST00000531873 ZNF579Q8NAF0 562 aaKnown RBP8.12□□□□□ -1.11
CD44-234ENST00000531873 DCBLD2Q96PD2 775 aa8.12□□□□□ -1.11
CD44-234ENST00000531873 PLSCR2Q9NRY7 297 aa8.12□□□□□ -1.11
CD44-234ENST00000531873 OTUD5Q96G74 571 aa8.04□□□□□ -1.12
CD44-234ENST00000531873 ZRANB1Q9UGI0 708 aa8.04□□□□□ -1.12
CD44-234ENST00000531873 CREBZFQ9NS37 354 aa8.01□□□□□ -1.13
CD44-234ENST00000531873 GALR2O43603 387 aaPredicted RBP8□□□□□ -1.13
CD44-234ENST00000531873 POTEB2H3BUK9 544 aa7.99□□□□□ -1.13
CD44-234ENST00000531873 STAG3Q9UJ98 1225 aa7.97□□□□□ -1.13
CD44-234ENST00000531873 POTEMA6NI47 508 aa7.95□□□□□ -1.14
CD44-234ENST00000531873 POTEGQ6S5H5 508 aa7.92□□□□□ -1.14
CD44-234ENST00000531873 PCDH10Q9P2E7 1040 aa7.92□□□□□ -1.14
CD44-234ENST00000531873 PAK3O75914 559 aaPredicted RBP7.91□□□□□ -1.14
CD44-234ENST00000531873 PELP1Q8IZL8 1130 aaKnown RBP7.9□□□□□ -1.14
CD44-234ENST00000531873 PHF12Q96QT6 1004 aa7.89□□□□□ -1.15
CD44-234ENST00000531873 ASTLQ6HA08 431 aaPredicted RBP7.86□□□□□ -1.15
CD44-234ENST00000531873 NPM1P06748 294 aaKnown RBP eCLIP7.85□□□□□ -1.15
CD44-234ENST00000531873 MNX1P50219 401 aaPredicted RBP7.85□□□□□ -1.15
CD44-234ENST00000531873 C7P10643 843 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms