RNA–Protein interactions for RNA: ENST00000530579.6

NEDD8-MDP1-201, Transcript of NEDD8-MDP1 readthrough, humanhuman

TSL 2

Gene NEDD8-MDP1, Length 471 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-MDP1-201ENST00000530579 HNRNPMP52272 730 aaKnown RBP eCLIP12.84□□□□□ -0.35
NEDD8-MDP1-201ENST00000530579 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.83□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 ABCA9Q8IUA7 1624 aa12.82□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 PTPN23Q9H3S7 1636 aa12.82□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 TCOF1Q13428 1488 aaKnown RBP12.82□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 ITSN2Q9NZM3 1697 aa12.82□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 CAMSAP2Q08AD1 1489 aa12.81□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 GLI2P10070 1586 aa12.81□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 CHIC2Q9UKJ5 165 aa12.8□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 CDC42BPAQ5VT25 1732 aa12.79□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 FANCAO15360 1455 aa12.79□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 DIP2BQ9P265 1576 aa12.79□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 TSPY4P0CV99 314 aa12.79□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 TSPY10P0CW01 314 aa12.79□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 RSPH4AQ5TD94 716 aa12.79□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 PREX2Q70Z35 1606 aa12.79□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 MYO5CQ9NQX4 1742 aa12.79□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 PLEKHH2Q8IVE3 1493 aa12.78□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 AKNAQ7Z591 1439 aa12.78□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 ARAP3Q8WWN8 1544 aa12.78□□□□□ -0.36
NEDD8-MDP1-201ENST00000530579 MYT1LQ9UL68 1186 aa12.76□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 ABCC5O15440 1437 aa12.76□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 SCAPERQ9BY12 1400 aa12.76□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 KIAA1107Q9UPP5 1409 aa12.76□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 CDC42BPBQ9Y5S2 1711 aa12.76□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 DAPK1P53355 1430 aa12.75□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 SAMD9LQ8IVG5 1584 aa12.75□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 AFAP1Q8N556 730 aa12.75□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 MAP3K4Q9Y6R4 1608 aa12.74□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 ADGRL1O94910 1474 aa12.74□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 PTPRKQ15262 1439 aa12.74□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 RRP7BPQ9NSQ0 103 aa12.74□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 TEX14Q8IWB6 1497 aa12.73□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 NEO1Q92859 1461 aa12.73□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 MBD5Q9P267 1494 aa12.73□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 SYCP2Q9BX26 1530 aa12.72□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 ARHGEF12Q9NZN5 1544 aa12.72□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 TRAPPC8Q9Y2L5 1435 aa12.72□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 SPAG9O60271 1321 aaKnown RBP12.71□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 RAPGEF3O95398 923 aa12.71□□□□□ -0.37
NEDD8-MDP1-201ENST00000530579 ABCC1P33527 1531 aa12.71□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 CCDC141Q6ZP82 1450 aa12.71□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 CFAP74Q9C0B2 1584 aa12.7□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 C9orf84Q5VXU9 1444 aa12.7□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 DNMT1P26358 1616 aaKnown RBP12.7□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 ANKRD30AQ9BXX3 1397 aa12.69□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 ARHGEF5Q12774 1597 aa12.69□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 DENND4BO75064 1496 aaPredicted RBP12.69□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 SETD5Q9C0A6 1442 aa12.68□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 ROCK1Q13464 1354 aa12.68□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 KIF13AQ9H1H9 1805 aa12.67□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 TSPOAP1O95153 1857 aa12.66□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 POGZQ7Z3K3 1410 aa12.66□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 ZNF518AQ6AHZ1 1483 aa12.65□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 SHANK2Q9UPX8 1470 aa12.65□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 NCOA1Q15788 1441 aa12.65□□□□□ -0.38
NEDD8-MDP1-201ENST00000530579 HFM1A2PYH4 1435 aa12.64□□□□□ -0.39
NEDD8-MDP1-201ENST00000530579 RTEL1-TNFRSF6BF6WH68 1400 aa12.63□□□□□ -0.39
NEDD8-MDP1-201ENST00000530579 NAIPQ13075 1403 aa12.63□□□□□ -0.39
NEDD8-MDP1-201ENST00000530579 RAB3GAP2Q9H2M9 1393 aa12.63□□□□□ -0.39
NEDD8-MDP1-201ENST00000530579 KIF15Q9NS87 1388 aa12.63□□□□□ -0.39
NEDD8-MDP1-201ENST00000530579 PPRC1Q5VV67 1664 aaKnown RBP12.63□□□□□ -0.39
NEDD8-MDP1-201ENST00000530579 ADGRL2O95490 1459 aa12.62□□□□□ -0.39
NEDD8-MDP1-201ENST00000530579 TRIM52Q96A61 297 aa12.62□□□□□ -0.39
NEDD8-MDP1-201ENST00000530579 HRCP23327 699 aa12.61□□□□□ -0.39
NEDD8-MDP1-201ENST00000530579 MAST1Q9Y2H9 1570 aa12.6□□□□□ -0.39
NEDD8-MDP1-201ENST00000530579 MLH3Q9UHC1 1453 aa12.59□□□□□ -0.39
NEDD8-MDP1-201ENST00000530579 COL17A1Q9UMD9 1497 aaPredicted RBP12.59□□□□□ -0.39
NEDD8-MDP1-201ENST00000530579 CROCC2H7BZ55 1655 aa12.59□□□□□ -0.39
NEDD8-MDP1-201ENST00000530579 ANKRD50Q9ULJ7 1429 aa12.59□□□□□ -0.39
NEDD8-MDP1-201ENST00000530579 ATP7AQ04656 1500 aa12.58□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 CCER1Q8TC90 406 aaPredicted RBP12.58□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 ADGBQ8N7X0 1667 aa12.57□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 ACIN1Q9UKV3 1341 aaKnown RBP12.57□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 ZFYVE16Q7Z3T8 1539 aa12.57□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 DHX29Q7Z478 1369 aaKnown RBP12.56□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 KDM5CP41229 1560 aa12.56□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.56□□□□□ -0.49e-8■■■□□ 14.9
NEDD8-MDP1-201ENST00000530579 MAGI2Q86UL8 1455 aa12.55□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 KIF3BO15066 747 aa12.55□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 DUOX2Q9NRD8 1548 aa12.55□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 YEATS2Q9ULM3 1422 aa12.54□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 PLXNC1O60486 1568 aa12.54□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 FRMPD1Q5SYB0 1578 aa12.54□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 HECW2Q9P2P5 1572 aa12.54□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 INO80Q9ULG1 1556 aaPredicted RBP12.54□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 A2MP01023 1474 aa12.53□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 RICTORQ6R327 1708 aa12.53□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 NUP155O75694 1391 aa12.53□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 ERBINQ96RT1 1412 aa12.53□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 KDM6BO15054 1643 aa12.52□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 GCC2Q8IWJ2 1684 aa12.52□□□□□ -0.4
NEDD8-MDP1-201ENST00000530579 ATP10AO60312 1499 aa12.52□□□□□ -0.41
NEDD8-MDP1-201ENST00000530579 ZMYM4Q5VZL5 1548 aa12.52□□□□□ -0.41
NEDD8-MDP1-201ENST00000530579 KIDINS220Q9ULH0 1771 aa12.51□□□□□ -0.41
NEDD8-MDP1-201ENST00000530579 MPHOSPH9Q99550 1183 aa12.51□□□□□ -0.41
NEDD8-MDP1-201ENST00000530579 SLC4A1APQ9BWU0 796 aaKnown RBP12.51□□□□□ -0.41
NEDD8-MDP1-201ENST00000530579 GGT6Q6P531 493 aa12.5□□□□□ -0.41
NEDD8-MDP1-201ENST00000530579 DHX57Q6P158 1386 aaKnown RBP12.49□□□□□ -0.41
NEDD8-MDP1-201ENST00000530579 ARID4BQ4LE39 1312 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms