RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	FANCA	O15360	1455 aa		32.47	■■■□□ 2.79
CD44-222	ENST00000526025	GPATCH8	Q9UKJ3	1502 aa	Known RBP	32.45	■■■□□ 2.78
CD44-222	ENST00000526025	CCNB3	Q8WWL7	1395 aa		32.43	■■■□□ 2.78
CD44-222	ENST00000526025	ARHGAP5	Q13017	1502 aa		32.42	■■■□□ 2.78
CD44-222	ENST00000526025	KDM6B	O15054	1643 aa		32.42	■■■□□ 2.78
CD44-222	ENST00000526025	EFCAB2	Q5VUJ9	269 aa		32.38	■■■□□ 2.77
CD44-222	ENST00000526025	AKNA	Q7Z591	1439 aa		32.37	■■■□□ 2.77
CD44-222	ENST00000526025	COL17A1	Q9UMD9	1497 aa	Predicted RBP	32.3	■■■□□ 2.76
CD44-222	ENST00000526025	ADGRL1	O94910	1474 aa		32.29	■■■□□ 2.76
CD44-222	ENST00000526025	ABCC1	P33527	1531 aa		32.28	■■■□□ 2.76
CD44-222	ENST00000526025	CFDP1	Q9UEE9	299 aa	Predicted RBP	32.28	■■■□□ 2.76
CD44-222	ENST00000526025	SAMD9L	Q8IVG5	1584 aa		32.28	■■■□□ 2.76
CD44-222	ENST00000526025	MYOM3	Q5VTT5	1437 aa		32.27	■■■□□ 2.76
CD44-222	ENST00000526025	PLEKHH2	Q8IVE3	1493 aa		32.26	■■■□□ 2.75
CD44-222	ENST00000526025	RICTOR	Q6R327	1708 aa		32.26	■■■□□ 2.75
CD44-222	ENST00000526025	MIA2	Q96PC5	1412 aa		32.26	■■■□□ 2.75
CD44-222	ENST00000526025	DENND4B	O75064	1496 aa	Predicted RBP	32.24	■■■□□ 2.75
CD44-222	ENST00000526025	KIAA1107	Q9UPP5	1409 aa		32.22	■■■□□ 2.75
CD44-222	ENST00000526025	FRMPD1	Q5SYB0	1578 aa		32.22	■■■□□ 2.75
CD44-222	ENST00000526025	SCAPER	Q9BY12	1400 aa		32.21	■■■□□ 2.75
CD44-222	ENST00000526025	POGZ	Q7Z3K3	1410 aa		32.19	■■■□□ 2.74
CD44-222	ENST00000526025	ZMYM4	Q5VZL5	1548 aa		32.16	■■■□□ 2.74
CD44-222	ENST00000526025	CAMSAP2	Q08AD1	1489 aa		32.15	■■■□□ 2.74
CD44-222	ENST00000526025	ZNF518A	Q6AHZ1	1483 aa		32.15	■■■□□ 2.74
CD44-222	ENST00000526025	ARHGEF12	Q9NZN5	1544 aa		32.15	■■■□□ 2.74
CD44-222	ENST00000526025	SYCP2	Q9BX26	1530 aa		32.14	■■■□□ 2.74
CD44-222	ENST00000526025	KDM5C	P41229	1560 aa		32.14	■■■□□ 2.74
CD44-222	ENST00000526025	FGD6	Q6ZV73	1430 aa		32.13	■■■□□ 2.73
CD44-222	ENST00000526025	ZNF777	Q9ULD5	760 aa	Predicted RBP	32.13	■■■□□ 2.73
CD44-222	ENST00000526025	PTPN23	Q9H3S7	1636 aa		32.1	■■■□□ 2.73
CD44-222	ENST00000526025	RAPGEF3	O95398	923 aa		32.09	■■■□□ 2.73
CD44-222	ENST00000526025	ARHGEF5	Q12774	1597 aa		32.08	■■■□□ 2.73
CD44-222	ENST00000526025	TCOF1	Q13428	1488 aa	Known RBP	32.08	■■■□□ 2.73
CD44-222	ENST00000526025	MAGI2	Q86UL8	1455 aa		32.08	■■■□□ 2.73
CD44-222	ENST00000526025	MBD5	Q9P267	1494 aa		32.08	■■■□□ 2.73
CD44-222	ENST00000526025	ZNF644	Q9H582	1327 aa	Predicted RBP	32.06	■■■□□ 2.72
CD44-222	ENST00000526025	TRAPPC8	Q9Y2L5	1435 aa		32.06	■■■□□ 2.72
CD44-222	ENST00000526025	HECW2	Q9P2P5	1572 aa		32.02	■■■□□ 2.72
CD44-222	ENST00000526025	RSPH4A	Q5TD94	716 aa		32.02	■■■□□ 2.72
CD44-222	ENST00000526025	MLH3	Q9UHC1	1453 aa		32.01	■■■□□ 2.71
CD44-222	ENST00000526025	CCDC141	Q6ZP82	1450 aa		32	■■■□□ 2.71
CD44-222	ENST00000526025	HNRNPM	P52272	730 aa	Known RBP eCLIP	32	■■■□□ 2.71
CD44-222	ENST00000526025	ARHGEF40	Q8TER5	1519 aa		32	■■■□□ 2.71
CD44-222	ENST00000526025	PPARGC1B	Q86YN6	1023 aa	Known RBP	31.99	■■■□□ 2.71
CD44-222	ENST00000526025	AFAP1	Q8N556	730 aa		31.98	■■■□□ 2.71
CD44-222	ENST00000526025	ZFYVE16	Q7Z3T8	1539 aa		31.97	■■■□□ 2.71
CD44-222	ENST00000526025	INO80	Q9ULG1	1556 aa	Predicted RBP	31.95	■■■□□ 2.71
CD44-222	ENST00000526025	KIDINS220	Q9ULH0	1771 aa		31.94	■■■□□ 2.7
CD44-222	ENST00000526025	DNMT1	P26358	1616 aa	Known RBP	31.93	■■■□□ 2.7
CD44-222	ENST00000526025	CROCC2	H7BZ55	1655 aa		31.92	■■■□□ 2.7
CD44-222	ENST00000526025	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	31.92	■■■□□ 2.7
CD44-222	ENST00000526025	RTEL1-TNFRSF6B	F6WH68	1400 aa		31.91	■■■□□ 2.7
CD44-222	ENST00000526025	RRBP1	Q9P2E9	1410 aa	Known RBP	31.91	■■■□□ 2.7
CD44-222	ENST00000526025	ATP7A	Q04656	1500 aa		31.9	■■■□□ 2.7
CD44-222	ENST00000526025	MAST1	Q9Y2H9	1570 aa		31.9	■■■□□ 2.7
CD44-222	ENST00000526025	SPAG9	O60271	1321 aa	Known RBP	31.89	■■■□□ 2.7
CD44-222	ENST00000526025	SHANK2	Q9UPX8	1470 aa		31.88	■■■□□ 2.69
CD44-222	ENST00000526025	YEATS2	Q9ULM3	1422 aa		31.87	■■■□□ 2.69
CD44-222	ENST00000526025	ABCA6	Q8N139	1617 aa		31.86	■■■□□ 2.69
CD44-222	ENST00000526025	DIP2C	Q9Y2E4	1556 aa		31.86	■■■□□ 2.69
CD44-222	ENST00000526025	RERE	Q9P2R6	1566 aa		31.85	■■■□□ 2.69
CD44-222	ENST00000526025	ABCC5	O15440	1437 aa		31.83	■■■□□ 2.69
CD44-222	ENST00000526025	DAPK1	P53355	1430 aa		31.83	■■■□□ 2.69
CD44-222	ENST00000526025	ATP10A	O60312	1499 aa		31.83	■■■□□ 2.69
CD44-222	ENST00000526025	ADGB	Q8N7X0	1667 aa		31.81	■■■□□ 2.68
CD44-222	ENST00000526025	TSPY4	P0CV99	314 aa		31.81	■■■□□ 2.68
CD44-222	ENST00000526025	TSPY10	P0CW01	314 aa		31.81	■■■□□ 2.68
CD44-222	ENST00000526025	C9orf84	Q5VXU9	1444 aa		31.8	■■■□□ 2.68
CD44-222	ENST00000526025	FAM50A	Q14320	339 aa	Known RBP	31.79	■■■□□ 2.68
CD44-222	ENST00000526025	PLXNC1	O60486	1568 aa		31.78	■■■□□ 2.68
CD44-222	ENST00000526025	MYT1L	Q9UL68	1186 aa		31.76	■■■□□ 2.67
CD44-222	ENST00000526025	SIGLEC1	Q9BZZ2	1709 aa		31.71	■■■□□ 2.67
CD44-222	ENST00000526025	AGL	P35573	1532 aa		31.7	■■■□□ 2.67
CD44-222	ENST00000526025	ADGRL2	O95490	1459 aa		31.7	■■■□□ 2.66
CD44-222	ENST00000526025	A2M	P01023	1474 aa		31.68	■■■□□ 2.66
CD44-222	ENST00000526025	BCORL1	Q5H9F3	1711 aa		31.63	■■■□□ 2.65
CD44-222	ENST00000526025	ANKRD30A	Q9BXX3	1397 aa		31.63	■■■□□ 2.65
CD44-222	ENST00000526025	PTPRK	Q15262	1439 aa		31.62	■■■□□ 2.65
CD44-222	ENST00000526025	DHX29	Q7Z478	1369 aa	Known RBP	31.62	■■■□□ 2.65
CD44-222	ENST00000526025	DUOX2	Q9NRD8	1548 aa		31.61	■■■□□ 2.65
CD44-222	ENST00000526025	NCOA1	Q15788	1441 aa		31.61	■■■□□ 2.65
CD44-222	ENST00000526025	ROCK1	Q13464	1354 aa		31.61	■■■□□ 2.65
CD44-222	ENST00000526025	EIF2AK4	Q9P2K8	1649 aa	Known RBP	31.59	■■■□□ 2.65
CD44-222	ENST00000526025	KIF15	Q9NS87	1388 aa		31.57	■■■□□ 2.64
CD44-222	ENST00000526025	ADAMTSL3	P82987	1691 aa		31.54	■■■□□ 2.64
CD44-222	ENST00000526025	ARID4B	Q4LE39	1312 aa	Predicted RBP	31.54	■■■□□ 2.64
CD44-222	ENST00000526025	ERBIN	Q96RT1	1412 aa		31.53	■■■□□ 2.64
CD44-222	ENST00000526025	CHIC2	Q9UKJ5	165 aa		31.52	■■■□□ 2.64
CD44-222	ENST00000526025	RNF17	Q9BXT8	1623 aa	Known RBP	31.48	■■■□□ 2.63
CD44-222	ENST00000526025	RRP7BP	Q9NSQ0	103 aa		31.47	■■■□□ 2.63
CD44-222	ENST00000526025	ITGAE	P38570	1179 aa		31.46	■■■□□ 2.63
CD44-222	ENST00000526025	FER1L4	A9Z1Z3	1794 aa		31.45	■■■□□ 2.62
CD44-222	ENST00000526025	FAM135A	Q9P2D6	1515 aa		31.44	■■■□□ 2.62
CD44-222	ENST00000526025	GCC2	Q8IWJ2	1684 aa		31.43	■■■□□ 2.62
CD44-222	ENST00000526025	MADD	Q8WXG6	1647 aa		31.42	■■■□□ 2.62
CD44-222	ENST00000526025	DEPDC5	O75140	1603 aa		31.41	■■■□□ 2.62
CD44-222	ENST00000526025	ANKRD50	Q9ULJ7	1429 aa		31.41	■■■□□ 2.62
CD44-222	ENST00000526025	PPP6R1	Q9UPN7	881 aa		31.4	■■■□□ 2.62
CD44-222	ENST00000526025	KDM4F	A0A1W2PPD8	638 aa		31.39	■■■□□ 2.62
CD44-222	ENST00000526025	KIF3B	O15066	747 aa		31.39	■■■□□ 2.62

Retrieved 100 of 20,778 RNA–protein pairs in 349.8 ms