RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 PLEKHD1A6NEE1 506 aa13.09□□□□□ -0.31
VAPB-206ENST00000520497 FGD6Q6ZV73 1430 aa13.09□□□□□ -0.31
VAPB-206ENST00000520497 WDR7Q9Y4E6 1490 aa13.09□□□□□ -0.31
VAPB-206ENST00000520497 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.08□□□□□ -0.31
VAPB-206ENST00000520497 ABCA9Q8IUA7 1624 aa13.07□□□□□ -0.32
VAPB-206ENST00000520497 CCNB3Q8WWL7 1395 aa13.07□□□□□ -0.32
VAPB-206ENST00000520497 ASXL2Q76L83 1435 aa13.06□□□□□ -0.32
VAPB-206ENST00000520497 TCOF1Q13428 1488 aaKnown RBP13.06□□□□□ -0.32
VAPB-206ENST00000520497 MIA2Q96PC5 1412 aa13.05□□□□□ -0.32
VAPB-206ENST00000520497 GPATCH8Q9UKJ3 1502 aaKnown RBP13.05□□□□□ -0.32
VAPB-206ENST00000520497 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.05□□□□□ -0.323e-7■■■■□ 22
VAPB-206ENST00000520497 PCGF6Q9BYE7 350 aa13.04□□□□□ -0.32
VAPB-206ENST00000520497 KDM6BO15054 1643 aa13.03□□□□□ -0.32
VAPB-206ENST00000520497 PPRC1Q5VV67 1664 aaKnown RBP13.02□□□□□ -0.32
VAPB-206ENST00000520497 ARAP3Q8WWN8 1544 aa13.02□□□□□ -0.33
VAPB-206ENST00000520497 CROCC2H7BZ55 1655 aa13.02□□□□□ -0.33
VAPB-206ENST00000520497 DNMT1P26358 1616 aaKnown RBP13.01□□□□□ -0.33
VAPB-206ENST00000520497 KDM4FA0A1W2PPD8 638 aa13□□□□□ -0.33
VAPB-206ENST00000520497 SAMD9LQ8IVG5 1584 aa12.99□□□□□ -0.33
VAPB-206ENST00000520497 CAMSAP2Q08AD1 1489 aa12.99□□□□□ -0.33
VAPB-206ENST00000520497 MAP3K4Q9Y6R4 1608 aa12.99□□□□□ -0.33
VAPB-206ENST00000520497 GLI2P10070 1586 aa12.98□□□□□ -0.33
VAPB-206ENST00000520497 COL17A1Q9UMD9 1497 aaPredicted RBP12.98□□□□□ -0.33
VAPB-206ENST00000520497 ADGBQ8N7X0 1667 aa12.96□□□□□ -0.33
VAPB-206ENST00000520497 ARHGAP5Q13017 1502 aa12.96□□□□□ -0.33
VAPB-206ENST00000520497 PLCH2O75038 1416 aa12.96□□□□□ -0.34
VAPB-206ENST00000520497 ARHGEF5Q12774 1597 aa12.95□□□□□ -0.34
VAPB-206ENST00000520497 KCNH8Q96L42 1107 aa12.95□□□□□ -0.34
VAPB-206ENST00000520497 CFAP74Q9C0B2 1584 aa12.94□□□□□ -0.34
VAPB-206ENST00000520497 GCC2Q8IWJ2 1684 aa12.93□□□□□ -0.34
VAPB-206ENST00000520497 FAM50AQ14320 339 aaKnown RBP12.93□□□□□ -0.34
VAPB-206ENST00000520497 CFDP1Q9UEE9 299 aaPredicted RBP12.93□□□□□ -0.34
VAPB-206ENST00000520497 ABCC1P33527 1531 aa12.93□□□□□ -0.34
VAPB-206ENST00000520497 DAPK1P53355 1430 aa12.91□□□□□ -0.34
VAPB-206ENST00000520497 PTPRKQ15262 1439 aa12.91□□□□□ -0.34
VAPB-206ENST00000520497 SYCP2Q9BX26 1530 aa12.91□□□□□ -0.34
VAPB-206ENST00000520497 PLEKHH2Q8IVE3 1493 aa12.91□□□□□ -0.34
VAPB-206ENST00000520497 ZNF644Q9H582 1327 aaPredicted RBP12.9□□□□□ -0.34
VAPB-206ENST00000520497 MBD5Q9P267 1494 aa12.9□□□□□ -0.34
VAPB-206ENST00000520497 FANCAO15360 1455 aa12.89□□□□□ -0.35
VAPB-206ENST00000520497 SHANK2Q9UPX8 1470 aa12.89□□□□□ -0.35
VAPB-206ENST00000520497 ABCC5O15440 1437 aa12.88□□□□□ -0.35
VAPB-206ENST00000520497 KIAA1107Q9UPP5 1409 aa12.88□□□□□ -0.35
VAPB-206ENST00000520497 MAST1Q9Y2H9 1570 aa12.88□□□□□ -0.35
VAPB-206ENST00000520497 ARHGEF12Q9NZN5 1544 aa12.88□□□□□ -0.35
VAPB-206ENST00000520497 CD109Q6YHK3 1445 aa12.88□□□□□ -0.35
VAPB-206ENST00000520497 AKNAQ7Z591 1439 aa12.88□□□□□ -0.35
VAPB-206ENST00000520497 ADGRL2O95490 1459 aa12.86□□□□□ -0.35
VAPB-206ENST00000520497 CCDC141Q6ZP82 1450 aa12.86□□□□□ -0.35
VAPB-206ENST00000520497 EFCAB2Q5VUJ9 269 aa12.85□□□□□ -0.35
VAPB-206ENST00000520497 ZNF777Q9ULD5 760 aaPredicted RBP12.85□□□□□ -0.35
VAPB-206ENST00000520497 ADGRL1O94910 1474 aa12.85□□□□□ -0.35
VAPB-206ENST00000520497 NEO1Q92859 1461 aa12.85□□□□□ -0.35
VAPB-206ENST00000520497 ITGAEP38570 1179 aa12.84□□□□□ -0.35
VAPB-206ENST00000520497 HFM1A2PYH4 1435 aa12.84□□□□□ -0.35
VAPB-206ENST00000520497 PLXNC1O60486 1568 aa12.84□□□□□ -0.35
VAPB-206ENST00000520497 RICTORQ6R327 1708 aa12.84□□□□□ -0.35
VAPB-206ENST00000520497 ROCK1Q13464 1354 aa12.83□□□□□ -0.36
VAPB-206ENST00000520497 INO80Q9ULG1 1556 aaPredicted RBP12.83□□□□□ -0.36
VAPB-206ENST00000520497 KDM5CP41229 1560 aa12.81□□□□□ -0.36
VAPB-206ENST00000520497 NAIPQ13075 1403 aa12.81□□□□□ -0.36
VAPB-206ENST00000520497 C9orf84Q5VXU9 1444 aa12.81□□□□□ -0.36
VAPB-206ENST00000520497 SETD5Q9C0A6 1442 aa12.81□□□□□ -0.36
VAPB-206ENST00000520497 TEX14Q8IWB6 1497 aa12.81□□□□□ -0.36
VAPB-206ENST00000520497 KIDINS220Q9ULH0 1771 aa12.8□□□□□ -0.36
VAPB-206ENST00000520497 ZFYVE16Q7Z3T8 1539 aa12.8□□□□□ -0.36
VAPB-206ENST00000520497 HNRNPMP52272 730 aaKnown RBP eCLIP12.8□□□□□ -0.368e-7■■■■□ 23.4
VAPB-206ENST00000520497 RSPH4AQ5TD94 716 aa12.8□□□□□ -0.36
VAPB-206ENST00000520497 NCOA1Q15788 1441 aa12.79□□□□□ -0.36
VAPB-206ENST00000520497 TRAPPC8Q9Y2L5 1435 aa12.79□□□□□ -0.36
VAPB-206ENST00000520497 RAB3GAP2Q9H2M9 1393 aa12.78□□□□□ -0.36
VAPB-206ENST00000520497 SCAPERQ9BY12 1400 aa12.78□□□□□ -0.36
VAPB-206ENST00000520497 FRMPD1Q5SYB0 1578 aa12.77□□□□□ -0.36
VAPB-206ENST00000520497 POGZQ7Z3K3 1410 aa12.77□□□□□ -0.37
VAPB-206ENST00000520497 ZNF518AQ6AHZ1 1483 aa12.77□□□□□ -0.37
VAPB-206ENST00000520497 ATP7AQ04656 1500 aa12.77□□□□□ -0.37
VAPB-206ENST00000520497 HECW2Q9P2P5 1572 aa12.77□□□□□ -0.37
VAPB-206ENST00000520497 CHIC2Q9UKJ5 165 aa12.76□□□□□ -0.37
VAPB-206ENST00000520497 ANKRD30AQ9BXX3 1397 aa12.76□□□□□ -0.37
VAPB-206ENST00000520497 RTEL1-TNFRSF6BF6WH68 1400 aa12.76□□□□□ -0.37
VAPB-206ENST00000520497 HRCP23327 699 aa12.75□□□□□ -0.37
VAPB-206ENST00000520497 ZMYM4Q5VZL5 1548 aa12.73□□□□□ -0.37
VAPB-206ENST00000520497 TSPY4P0CV99 314 aa12.73□□□□□ -0.37
VAPB-206ENST00000520497 TSPY10P0CW01 314 aa12.73□□□□□ -0.37
VAPB-206ENST00000520497 RRP7BPQ9NSQ0 103 aa12.73□□□□□ -0.37
VAPB-206ENST00000520497 DUOX2Q9NRD8 1548 aa12.72□□□□□ -0.37
VAPB-206ENST00000520497 DENND4BO75064 1496 aaPredicted RBP12.72□□□□□ -0.37
VAPB-206ENST00000520497 ABCA6Q8N139 1617 aa12.72□□□□□ -0.37
VAPB-206ENST00000520497 MLH3Q9UHC1 1453 aa12.72□□□□□ -0.37
VAPB-206ENST00000520497 KIF15Q9NS87 1388 aa12.71□□□□□ -0.37
VAPB-206ENST00000520497 EIF2AK4Q9P2K8 1649 aaKnown RBP12.71□□□□□ -0.37
VAPB-206ENST00000520497 RAPGEF3O95398 923 aa12.71□□□□□ -0.37
VAPB-206ENST00000520497 BCORL1Q5H9F3 1711 aa12.71□□□□□ -0.38
VAPB-206ENST00000520497 UNC13BO14795 1591 aa12.7□□□□□ -0.38
VAPB-206ENST00000520497 AFAP1Q8N556 730 aa12.7□□□□□ -0.38
VAPB-206ENST00000520497 ANKRD50Q9ULJ7 1429 aa12.7□□□□□ -0.38
VAPB-206ENST00000520497 DEPDC5O75140 1603 aa12.7□□□□□ -0.38
VAPB-206ENST00000520497 DHX57Q6P158 1386 aaKnown RBP12.69□□□□□ -0.38
VAPB-206ENST00000520497 SPAG9O60271 1321 aaKnown RBP12.69□□□□□ -0.38
VAPB-206ENST00000520497 DIP2CQ9Y2E4 1556 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms