RNA–Protein interactions for RNA: ENST00000517838.5

PVT1-206, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 518 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-206ENST00000517838 P3H3Q8IVL6 736 aa12.4□□□□□ -0.42
PVT1-206ENST00000517838 ARID4BQ4LE39 1312 aaPredicted RBP12.37□□□□□ -0.43
PVT1-206ENST00000517838 PRXQ9BXM0 1461 aa12.36□□□□□ -0.43
PVT1-206ENST00000517838 ADAMTSL3P82987 1691 aa12.35□□□□□ -0.43
PVT1-206ENST00000517838 LMTK3Q96Q04 1460 aa12.35□□□□□ -0.43
PVT1-206ENST00000517838 FAM9AQ8IZU1 332 aaPredicted RBP12.35□□□□□ -0.43
PVT1-206ENST00000517838 NEO1Q92859 1461 aa12.34□□□□□ -0.43
PVT1-206ENST00000517838 HSPA2P54652 639 aa12.33□□□□□ -0.44
PVT1-206ENST00000517838 PCF11O94913 1555 aaKnown RBP12.33□□□□□ -0.44
PVT1-206ENST00000517838 ABCA9Q8IUA7 1624 aa12.31□□□□□ -0.44
PVT1-206ENST00000517838 CTTNBP2Q8WZ74 1663 aa12.29□□□□□ -0.44
PVT1-206ENST00000517838 CERKQ8TCT0 537 aa12.29□□□□□ -0.44
PVT1-206ENST00000517838 FRMPD1Q5SYB0 1578 aa12.28□□□□□ -0.44
PVT1-206ENST00000517838 MADDQ8WXG6 1647 aa12.28□□□□□ -0.44
PVT1-206ENST00000517838 BCORL1Q5H9F3 1711 aa12.27□□□□□ -0.45
PVT1-206ENST00000517838 PLEKHD1A6NEE1 506 aa12.26□□□□□ -0.45
PVT1-206ENST00000517838 FHOD3Q2V2M9 1422 aa12.26□□□□□ -0.45
PVT1-206ENST00000517838 DENND4BO75064 1496 aaPredicted RBP12.26□□□□□ -0.45
PVT1-206ENST00000517838 AKNAQ7Z591 1439 aa12.25□□□□□ -0.45
PVT1-206ENST00000517838 NUP153P49790 1475 aaKnown RBP12.25□□□□□ -0.45
PVT1-206ENST00000517838 RANGAP1P46060 587 aaPredicted RBP12.23□□□□□ -0.45
PVT1-206ENST00000517838 MLECQ14165 292 aa12.23□□□□□ -0.45
PVT1-206ENST00000517838 YEATS2Q9ULM3 1422 aa12.22□□□□□ -0.45
PVT1-206ENST00000517838 ILDR2Q71H61 639 aa12.22□□□□□ -0.45
PVT1-206ENST00000517838 ARHGEF40Q8TER5 1519 aa12.21□□□□□ -0.45
PVT1-206ENST00000517838 FANCAO15360 1455 aa12.21□□□□□ -0.45
PVT1-206ENST00000517838 POGZQ7Z3K3 1410 aa12.21□□□□□ -0.45
PVT1-206ENST00000517838 SAMD9Q5K651 1589 aa12.21□□□□□ -0.46
PVT1-206ENST00000517838 RAPGEF6Q8TEU7 1601 aa12.2□□□□□ -0.46
PVT1-206ENST00000517838 ZBTB12Q9Y330 459 aaPredicted RBP12.19□□□□□ -0.46
PVT1-206ENST00000517838 RIMS1Q86UR5 1692 aaKnown RBP12.19□□□□□ -0.46
PVT1-206ENST00000517838 CEBPAP49715 358 aaPredicted RBP12.18□□□□□ -0.46
PVT1-206ENST00000517838 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.17□□□□□ -0.46
PVT1-206ENST00000517838 MAGI2Q86UL8 1455 aa12.17□□□□□ -0.46
PVT1-206ENST00000517838 SOCS7O14512 581 aa12.16□□□□□ -0.46
PVT1-206ENST00000517838 SCAPERQ9BY12 1400 aa12.16□□□□□ -0.46
PVT1-206ENST00000517838 RICTORQ6R327 1708 aa12.16□□□□□ -0.46
PVT1-206ENST00000517838 DISP3Q9P2K9 1392 aa12.16□□□□□ -0.46
PVT1-206ENST00000517838 ZMYM4Q5VZL5 1548 aa12.16□□□□□ -0.46
PVT1-206ENST00000517838 ZFYVE16Q7Z3T8 1539 aa12.16□□□□□ -0.46
PVT1-206ENST00000517838 SIGLEC1Q9BZZ2 1709 aa12.15□□□□□ -0.46
PVT1-206ENST00000517838 PLCH2O75038 1416 aa12.13□□□□□ -0.47
PVT1-206ENST00000517838 EFCAB5A4FU69 1503 aa12.13□□□□□ -0.47
PVT1-206ENST00000517838 ATP10AO60312 1499 aa12.13□□□□□ -0.47
PVT1-206ENST00000517838 TTC37Q6PGP7 1564 aa12.12□□□□□ -0.47
PVT1-206ENST00000517838 ARHGEF12Q9NZN5 1544 aa12.11□□□□□ -0.47
PVT1-206ENST00000517838 HECW1Q76N89 1606 aa12.11□□□□□ -0.47
PVT1-206ENST00000517838 EFCAB2Q5VUJ9 269 aa12.11□□□□□ -0.47
PVT1-206ENST00000517838 AFAP1Q8N556 730 aa12.1□□□□□ -0.47
PVT1-206ENST00000517838 C9orf84Q5VXU9 1444 aa12.09□□□□□ -0.47
PVT1-206ENST00000517838 CFAP74Q9C0B2 1584 aa12.09□□□□□ -0.47
PVT1-206ENST00000517838 CDK13Q14004 1512 aaKnown RBP12.08□□□□□ -0.48
PVT1-206ENST00000517838 MKRN4PQ13434 485 aaPredicted RBP12.07□□□□□ -0.48
PVT1-206ENST00000517838 ATP1B4Q9UN42 357 aaPredicted RBP12.06□□□□□ -0.48
PVT1-206ENST00000517838 UHRF1BP1Q6BDS2 1440 aa12.05□□□□□ -0.48
PVT1-206ENST00000517838 PTPRTO14522 1441 aa12.04□□□□□ -0.48
PVT1-206ENST00000517838 EEA1Q15075 1411 aa12.03□□□□□ -0.48
PVT1-206ENST00000517838 FER1L4A9Z1Z3 1794 aa12.03□□□□□ -0.48
PVT1-206ENST00000517838 MYT1LQ9UL68 1186 aa12.03□□□□□ -0.48
PVT1-206ENST00000517838 CDK11AQ9UQ88 783 aaPredicted RBP12.03□□□□□ -0.48
PVT1-206ENST00000517838 STRCQ7RTU9 1775 aa12.02□□□□□ -0.49
PVT1-206ENST00000517838 ZNF518AQ6AHZ1 1483 aa12.02□□□□□ -0.49
PVT1-206ENST00000517838 PREX1Q8TCU6 1659 aa12.01□□□□□ -0.49
PVT1-206ENST00000517838 RBM42Q9BTD8 480 aaKnown RBP11.99□□□□□ -0.49
PVT1-206ENST00000517838 TRAPPC8Q9Y2L5 1435 aa11.99□□□□□ -0.49
PVT1-206ENST00000517838 LTBP4Q8N2S1 1624 aa11.99□□□□□ -0.49
PVT1-206ENST00000517838 ESF1Q9H501 851 aaKnown RBP11.98□□□□□ -0.49
PVT1-206ENST00000517838 KDM5CP41229 1560 aa11.97□□□□□ -0.49
PVT1-206ENST00000517838 MLH3Q9UHC1 1453 aa11.97□□□□□ -0.49
PVT1-206ENST00000517838 TROQ12816 1431 aaPredicted RBP11.97□□□□□ -0.49
PVT1-206ENST00000517838 FMN1Q68DA7 1419 aa11.97□□□□□ -0.49
PVT1-206ENST00000517838 ARHGAP5Q13017 1502 aa11.96□□□□□ -0.49
PVT1-206ENST00000517838 NCOA1Q15788 1441 aa11.96□□□□□ -0.49
PVT1-206ENST00000517838 UBTFP17480 764 aaKnown RBP11.96□□□□□ -0.49
PVT1-206ENST00000517838 DIP2CQ9Y2E4 1556 aa11.96□□□□□ -0.5
PVT1-206ENST00000517838 NCKAP5LQ9HCH0 1330 aa11.95□□□□□ -0.5
PVT1-206ENST00000517838 KIF14Q15058 1648 aa11.95□□□□□ -0.5
PVT1-206ENST00000517838 SPATA31D1Q6ZQQ2 1576 aa11.95□□□□□ -0.5
PVT1-206ENST00000517838 REREQ9P2R6 1566 aa11.95□□□□□ -0.5
PVT1-206ENST00000517838 IQSEC2Q5JU85 1478 aa11.95□□□□□ -0.5
PVT1-206ENST00000517838 ARHGAP35Q9NRY4 1499 aa11.95□□□□□ -0.5
PVT1-206ENST00000517838 AGLP35573 1532 aa11.94□□□□□ -0.5
PVT1-206ENST00000517838 ZNF335Q9H4Z2 1342 aaPredicted RBP11.93□□□□□ -0.5
PVT1-206ENST00000517838 CLIP1P30622 1438 aa11.93□□□□□ -0.5
PVT1-206ENST00000517838 ZMYM3Q14202 1370 aa11.92□□□□□ -0.5
PVT1-206ENST00000517838 UBAP1LF5GYI3 381 aa11.92□□□□□ -0.5
PVT1-206ENST00000517838 CNTLNQ9NXG0 1405 aa11.92□□□□□ -0.5
PVT1-206ENST00000517838 SETD1BQ9UPS6 1966 aaKnown RBP11.91□□□□□ -0.5
PVT1-206ENST00000517838 ABCA6Q8N139 1617 aa11.91□□□□□ -0.5
PVT1-206ENST00000517838 MYO5CQ9NQX4 1742 aa11.91□□□□□ -0.5
PVT1-206ENST00000517838 C3P01024 1663 aa11.91□□□□□ -0.5
PVT1-206ENST00000517838 NPATQ14207 1427 aa11.9□□□□□ -0.5
PVT1-206ENST00000517838 PKD2Q13563 968 aa11.88□□□□□ -0.51
PVT1-206ENST00000517838 CAMSAP1Q5T5Y3 1602 aa11.88□□□□□ -0.51
PVT1-206ENST00000517838 ABCC1P33527 1531 aa11.87□□□□□ -0.51
PVT1-206ENST00000517838 HNRNPMP52272 730 aaKnown RBP eCLIP11.87□□□□□ -0.511e-6■■■■□ 21.5
PVT1-206ENST00000517838 ZNF777Q9ULD5 760 aaPredicted RBP11.87□□□□□ -0.51
PVT1-206ENST00000517838 SPDYE2BA6NHP3 402 aa11.86□□□□□ -0.51
PVT1-206ENST00000517838 SPDYE6P0CI01 402 aa11.86□□□□□ -0.51
PVT1-206ENST00000517838 SPDYE2Q495Y8 402 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms