RNA–Protein interactions for RNA: ENST00000517838.5

PVT1-206, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 518 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-206ENST00000517838 AEBP2Q6ZN18 517 aaPredicted RBP21.28■■□□□ 1
PVT1-206ENST00000517838 CHIC1Q5VXU3 224 aa20.61■□□□□ 0.89
PVT1-206ENST00000517838 NISCHQ9Y2I1 1504 aa18.36■□□□□ 0.53
PVT1-206ENST00000517838 PHF23Q9BUL5 403 aaPredicted RBP18.11■□□□□ 0.49
PVT1-206ENST00000517838 SENP3Q9H4L4 574 aaPredicted RBP18.06■□□□□ 0.48
PVT1-206ENST00000517838 ABCC9O60706 1549 aa16.91■□□□□ 0.3
PVT1-206ENST00000517838 FOXD1Q16676 465 aa16.79■□□□□ 0.28
PVT1-206ENST00000517838 PLPPR3Q6T4P5 718 aa16.64■□□□□ 0.25
PVT1-206ENST00000517838 CCDC180Q9P1Z9 1646 aa16.45■□□□□ 0.22
PVT1-206ENST00000517838 DNAJC5BQ9UF47 199 aa16.25■□□□□ 0.19
PVT1-206ENST00000517838 PPP6R1Q9UPN7 881 aa16.03■□□□□ 0.16
PVT1-206ENST00000517838 ADRA2BP18089 450 aa15.97■□□□□ 0.15
PVT1-206ENST00000517838 RB1CC1Q8TDY2 1594 aa15.88■□□□□ 0.13
PVT1-206ENST00000517838 PABPN1Q86U42 306 aaKnown RBP eCLIP15.78■□□□□ 0.12
PVT1-206ENST00000517838 PIAS4Q8N2W9 510 aaPredicted RBP15.76■□□□□ 0.11
PVT1-206ENST00000517838 NACADO15069 1562 aa15.72■□□□□ 0.11
PVT1-206ENST00000517838 DCAF8L2P0C7V8 631 aa15.72■□□□□ 0.11
PVT1-206ENST00000517838 MSH5O43196 834 aa15.53■□□□□ 0.08
PVT1-206ENST00000517838 BICRAQ9NZM4 1560 aa15.48■□□□□ 0.07
PVT1-206ENST00000517838 MYO15BQ96JP2 1530 aa15.43■□□□□ 0.06
PVT1-206ENST00000517838 UNC13AQ9UPW8 1703 aa15.4■□□□□ 0.06
PVT1-206ENST00000517838 CECR2Q9BXF3 1484 aa15.27■□□□□ 0.03
PVT1-206ENST00000517838 CC2D2AQ9P2K1 1620 aa15.2■□□□□ 0.02
PVT1-206ENST00000517838 SHROOM4Q9ULL8 1493 aa15.2■□□□□ 0.02
PVT1-206ENST00000517838 ZCCHC6Q5VYS8 1495 aaKnown RBP15.14■□□□□ 0.01
PVT1-206ENST00000517838 DCAF1Q9Y4B6 1507 aa15.12■□□□□ 0.01
PVT1-206ENST00000517838 DNAJC5Q9H3Z4 198 aa15.11■□□□□ 0.01
PVT1-206ENST00000517838 EIF4G1Q04637 1599 aaKnown RBP15.11■□□□□ 0.01
PVT1-206ENST00000517838 SCRIBQ14160 1630 aa15.05■□□□□ -0
PVT1-206ENST00000517838 CUX2O14529 1486 aa14.66□□□□□ -0.06
PVT1-206ENST00000517838 PPP4R3CPQ6ZMV5 832 aa14.63□□□□□ -0.07
PVT1-206ENST00000517838 NCAPD3P42695 1498 aa14.6□□□□□ -0.07
PVT1-206ENST00000517838 ERCC6Q03468 1493 aa14.59□□□□□ -0.07
PVT1-206ENST00000517838 SCAF1Q9H7N4 1312 aaKnown RBP14.59□□□□□ -0.07
PVT1-206ENST00000517838 MAPK8IP2Q13387 824 aaPredicted RBP14.54□□□□□ -0.08
PVT1-206ENST00000517838 ATAD2BQ9ULI0 1458 aa14.5□□□□□ -0.09
PVT1-206ENST00000517838 POTEDQ86YR6 584 aa14.46□□□□□ -0.09
PVT1-206ENST00000517838 NESP48681 1621 aa14.45□□□□□ -0.1
PVT1-206ENST00000517838 DMRT2Q9Y5R5 561 aa14.4□□□□□ -0.1
PVT1-206ENST00000517838 HMGXB3Q12766 1538 aa14.37□□□□□ -0.11
PVT1-206ENST00000517838 SMARCA2P51531 1590 aa14.37□□□□□ -0.11
PVT1-206ENST00000517838 SMARCA4P51532 1647 aa14.32□□□□□ -0.12
PVT1-206ENST00000517838 BAZ1BQ9UIG0 1483 aaKnown RBP14.31□□□□□ -0.12
PVT1-206ENST00000517838 TRIM41Q8WV44 630 aa14.3□□□□□ -0.12
PVT1-206ENST00000517838 THOC2Q8NI27 1593 aaKnown RBP14.26□□□□□ -0.13
PVT1-206ENST00000517838 CNKSR2Q8WXI2 1034 aa14.26□□□□□ -0.13
PVT1-206ENST00000517838 BAZ1AQ9NRL2 1556 aaPredicted RBP14.22□□□□□ -0.13
PVT1-206ENST00000517838 PDS5BQ9NTI5 1447 aa14.22□□□□□ -0.13
PVT1-206ENST00000517838 LAMC3Q9Y6N6 1575 aa14.22□□□□□ -0.13
PVT1-206ENST00000517838 PEG3Q9GZU2 1588 aa14.21□□□□□ -0.14
PVT1-206ENST00000517838 NCBP3Q53F19 620 aaKnown RBP14.17□□□□□ -0.14
PVT1-206ENST00000517838 MROH2BQ7Z745 1585 aa14.15□□□□□ -0.14
PVT1-206ENST00000517838 CADPSQ9ULU8 1353 aa14.15□□□□□ -0.14
PVT1-206ENST00000517838 KIF21AQ7Z4S6 1674 aa14.11□□□□□ -0.15
PVT1-206ENST00000517838 KCNA4P22459 653 aa14.11□□□□□ -0.15
PVT1-206ENST00000517838 MRC2Q9UBG0 1479 aa14.09□□□□□ -0.15
PVT1-206ENST00000517838 HOXD11P31277 338 aaPredicted RBP14.05□□□□□ -0.16
PVT1-206ENST00000517838 WDR62O43379 1518 aa14.05□□□□□ -0.16
PVT1-206ENST00000517838 RNF216Q9NWF9 866 aaPredicted RBP14.04□□□□□ -0.16
PVT1-206ENST00000517838 OSCARQ8IYS5 282 aa14.03□□□□□ -0.16
PVT1-206ENST00000517838 NPM3O75607 178 aaKnown RBP14.01□□□□□ -0.17
PVT1-206ENST00000517838 CEP164Q9UPV0 1460 aa13.96□□□□□ -0.17
PVT1-206ENST00000517838 FANCD2Q9BXW9 1451 aa13.95□□□□□ -0.18
PVT1-206ENST00000517838 WIZO95785 1651 aa13.91□□□□□ -0.18
PVT1-206ENST00000517838 CFTRP13569 1480 aa13.9□□□□□ -0.18
PVT1-206ENST00000517838 URB2Q14146 1524 aaKnown RBP13.86□□□□□ -0.19
PVT1-206ENST00000517838 RSF1Q96T23 1441 aaPredicted RBP13.8□□□□□ -0.2
PVT1-206ENST00000517838 RIMBP3CA6NJZ7 1639 aa13.75□□□□□ -0.21
PVT1-206ENST00000517838 RIMBP3BA6NNM3 1639 aa13.75□□□□□ -0.21
PVT1-206ENST00000517838 RIMBP3Q9UFD9 1639 aa13.75□□□□□ -0.21
PVT1-206ENST00000517838 ZNF608Q9ULD9 1512 aaPredicted RBP13.75□□□□□ -0.21
PVT1-206ENST00000517838 CYB5RLQ6IPT4 315 aa13.74□□□□□ -0.21
PVT1-206ENST00000517838 ARHGEF11O15085 1522 aa13.73□□□□□ -0.21
PVT1-206ENST00000517838 TOP2AP11388 1531 aaKnown RBP13.72□□□□□ -0.21
PVT1-206ENST00000517838 IFT140Q96RY7 1462 aa13.71□□□□□ -0.21
PVT1-206ENST00000517838 DCAF8L1A6NGE4 600 aa13.69□□□□□ -0.22
PVT1-206ENST00000517838 TRHP20396 242 aaPredicted RBP13.65□□□□□ -0.22
PVT1-206ENST00000517838 TOPBP1Q92547 1522 aa13.64□□□□□ -0.23
PVT1-206ENST00000517838 CCDC88BA6NC98 1476 aa13.64□□□□□ -0.23
PVT1-206ENST00000517838 AQRO60306 1485 aaKnown RBP eCLIP13.61□□□□□ -0.233e-7■■□□□ 11.6
PVT1-206ENST00000517838 FBLN2P98095 1184 aa13.59□□□□□ -0.23
PVT1-206ENST00000517838 ARAP1Q96P48 1450 aa13.59□□□□□ -0.23
PVT1-206ENST00000517838 ABCC8Q09428 1581 aa13.57□□□□□ -0.24
PVT1-206ENST00000517838 EIF4G3O43432 1585 aaKnown RBP13.56□□□□□ -0.24
PVT1-206ENST00000517838 DNMBPQ6XZF7 1577 aa13.52□□□□□ -0.25
PVT1-206ENST00000517838 TARBP1Q13395 1621 aaKnown RBP13.51□□□□□ -0.25
PVT1-206ENST00000517838 TDRD9Q8NDG6 1382 aaKnown RBP13.5□□□□□ -0.25
PVT1-206ENST00000517838 POLA1P09884 1462 aaPredicted RBP13.49□□□□□ -0.25
PVT1-206ENST00000517838 RAD54L2Q9Y4B4 1467 aa13.48□□□□□ -0.25
PVT1-206ENST00000517838 PRDM2Q13029 1718 aa13.48□□□□□ -0.25
PVT1-206ENST00000517838 CHD1O14646 1710 aa13.46□□□□□ -0.25
PVT1-206ENST00000517838 SOGA1O94964 1423 aa13.46□□□□□ -0.26
PVT1-206ENST00000517838 CHMP7Q8WUX9 453 aaPredicted RBP13.44□□□□□ -0.26
PVT1-206ENST00000517838 SNAPC4Q5SXM2 1469 aa13.41□□□□□ -0.26
PVT1-206ENST00000517838 CLASP1Q7Z460 1538 aa13.4□□□□□ -0.26
PVT1-206ENST00000517838 SLC4A1APQ9BWU0 796 aaKnown RBP13.38□□□□□ -0.27
PVT1-206ENST00000517838 FGD5Q6ZNL6 1462 aa13.36□□□□□ -0.27
PVT1-206ENST00000517838 MAGI1Q96QZ7 1491 aaPredicted RBP13.35□□□□□ -0.27
PVT1-206ENST00000517838 GRIN2BQ13224 1484 aa13.34□□□□□ -0.27
PVT1-206ENST00000517838 SYNJ2O15056 1496 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms