RNA–Protein interactions for RNA: ENST00000514830.5

PDLIM5-220, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 802 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-220ENST00000514830 CFAP74Q9C0B2 1584 aa18.54■□□□□ 0.56
PDLIM5-220ENST00000514830 PHLDB1Q86UU1 1377 aa18.53■□□□□ 0.56
PDLIM5-220ENST00000514830 TEX14Q8IWB6 1497 aa18.49■□□□□ 0.55
PDLIM5-220ENST00000514830 FGD6Q6ZV73 1430 aa18.49■□□□□ 0.55
PDLIM5-220ENST00000514830 NEO1Q92859 1461 aa18.48■□□□□ 0.55
PDLIM5-220ENST00000514830 ARHGAP5Q13017 1502 aa18.48■□□□□ 0.55
PDLIM5-220ENST00000514830 TSPOAP1O95153 1857 aa18.48■□□□□ 0.55
PDLIM5-220ENST00000514830 FANCAO15360 1455 aa18.46■□□□□ 0.55
PDLIM5-220ENST00000514830 TCOF1Q13428 1488 aaKnown RBP18.46■□□□□ 0.55
PDLIM5-220ENST00000514830 PTPN23Q9H3S7 1636 aa18.46■□□□□ 0.55
PDLIM5-220ENST00000514830 PPARGC1BQ86YN6 1023 aaKnown RBP18.46■□□□□ 0.55
PDLIM5-220ENST00000514830 RRBP1Q9P2E9 1410 aaKnown RBP18.46■□□□□ 0.55
PDLIM5-220ENST00000514830 SAMD9LQ8IVG5 1584 aa18.46■□□□□ 0.55
PDLIM5-220ENST00000514830 KDM6BO15054 1643 aa18.45■□□□□ 0.54
PDLIM5-220ENST00000514830 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.45■□□□□ 0.54
PDLIM5-220ENST00000514830 PLEKHH2Q8IVE3 1493 aa18.45■□□□□ 0.54
PDLIM5-220ENST00000514830 EFCAB2Q5VUJ9 269 aa18.44■□□□□ 0.54
PDLIM5-220ENST00000514830 CFDP1Q9UEE9 299 aaPredicted RBP18.44■□□□□ 0.54
PDLIM5-220ENST00000514830 KIAA1107Q9UPP5 1409 aa18.42■□□□□ 0.54
PDLIM5-220ENST00000514830 ABCC1P33527 1531 aa18.42■□□□□ 0.54
PDLIM5-220ENST00000514830 CAMSAP2Q08AD1 1489 aa18.41■□□□□ 0.54
PDLIM5-220ENST00000514830 AKNAQ7Z591 1439 aa18.4■□□□□ 0.54
PDLIM5-220ENST00000514830 ARHGEF5Q12774 1597 aa18.39■□□□□ 0.53
PDLIM5-220ENST00000514830 ADGRL1O94910 1474 aa18.37■□□□□ 0.53
PDLIM5-220ENST00000514830 DNMT1P26358 1616 aaKnown RBP18.36■□□□□ 0.53
PDLIM5-220ENST00000514830 MBD5Q9P267 1494 aa18.36■□□□□ 0.53
PDLIM5-220ENST00000514830 SYCP2Q9BX26 1530 aa18.35■□□□□ 0.53
PDLIM5-220ENST00000514830 KDM4FA0A1W2PPD8 638 aa18.35■□□□□ 0.53
PDLIM5-220ENST00000514830 RICTORQ6R327 1708 aa18.35■□□□□ 0.53
PDLIM5-220ENST00000514830 CROCC2H7BZ55 1655 aa18.34■□□□□ 0.53
PDLIM5-220ENST00000514830 ARHGEF12Q9NZN5 1544 aa18.34■□□□□ 0.53
PDLIM5-220ENST00000514830 RSPH4AQ5TD94 716 aa18.33■□□□□ 0.52
PDLIM5-220ENST00000514830 ZNF644Q9H582 1327 aaPredicted RBP18.32■□□□□ 0.52
PDLIM5-220ENST00000514830 SCAPERQ9BY12 1400 aa18.32■□□□□ 0.52
PDLIM5-220ENST00000514830 KDM5CP41229 1560 aa18.31■□□□□ 0.52
PDLIM5-220ENST00000514830 POGZQ7Z3K3 1410 aa18.31■□□□□ 0.52
PDLIM5-220ENST00000514830 MAST1Q9Y2H9 1570 aa18.3■□□□□ 0.52
PDLIM5-220ENST00000514830 ZNF777Q9ULD5 760 aaPredicted RBP18.3■□□□□ 0.52
PDLIM5-220ENST00000514830 DENND4BO75064 1496 aaPredicted RBP18.3■□□□□ 0.52
PDLIM5-220ENST00000514830 ZNF518AQ6AHZ1 1483 aa18.3■□□□□ 0.52
PDLIM5-220ENST00000514830 CCDC141Q6ZP82 1450 aa18.3■□□□□ 0.52
PDLIM5-220ENST00000514830 SHANK2Q9UPX8 1470 aa18.3■□□□□ 0.52
PDLIM5-220ENST00000514830 FRMPD1Q5SYB0 1578 aa18.3■□□□□ 0.52
PDLIM5-220ENST00000514830 ZMYM4Q5VZL5 1548 aa18.28■□□□□ 0.52
PDLIM5-220ENST00000514830 DAPK1P53355 1430 aa18.27■□□□□ 0.52
PDLIM5-220ENST00000514830 TRAPPC8Q9Y2L5 1435 aa18.27■□□□□ 0.52
PDLIM5-220ENST00000514830 ABCC5O15440 1437 aa18.26■□□□□ 0.51
PDLIM5-220ENST00000514830 INO80Q9ULG1 1556 aaPredicted RBP18.25■□□□□ 0.51
PDLIM5-220ENST00000514830 ADGBQ8N7X0 1667 aa18.25■□□□□ 0.51
PDLIM5-220ENST00000514830 HNRNPMP52272 730 aaKnown RBP eCLIP18.25■□□□□ 0.515e-6■■■□□ 18.5
PDLIM5-220ENST00000514830 FAM50AQ14320 339 aaKnown RBP18.25■□□□□ 0.51
PDLIM5-220ENST00000514830 COL17A1Q9UMD9 1497 aaPredicted RBP18.25■□□□□ 0.51
PDLIM5-220ENST00000514830 RTEL1-TNFRSF6BF6WH68 1400 aa18.24■□□□□ 0.51
PDLIM5-220ENST00000514830 MLH3Q9UHC1 1453 aa18.24■□□□□ 0.51
PDLIM5-220ENST00000514830 HECW2Q9P2P5 1572 aa18.23■□□□□ 0.51
PDLIM5-220ENST00000514830 ADGRL2O95490 1459 aa18.23■□□□□ 0.51
PDLIM5-220ENST00000514830 MAGI2Q86UL8 1455 aa18.23■□□□□ 0.51
PDLIM5-220ENST00000514830 PLXNC1O60486 1568 aa18.22■□□□□ 0.51
PDLIM5-220ENST00000514830 TRIM26Q12899 539 aaPredicted RBP18.22■□□□□ 0.51
PDLIM5-220ENST00000514830 ZFYVE16Q7Z3T8 1539 aa18.22■□□□□ 0.51
PDLIM5-220ENST00000514830 KIDINS220Q9ULH0 1771 aa18.22■□□□□ 0.51
PDLIM5-220ENST00000514830 ATP7AQ04656 1500 aa18.2■□□□□ 0.5
PDLIM5-220ENST00000514830 PTPRKQ15262 1439 aa18.2■□□□□ 0.5
PDLIM5-220ENST00000514830 C9orf84Q5VXU9 1444 aa18.2■□□□□ 0.5
PDLIM5-220ENST00000514830 ROCK1Q13464 1354 aa18.19■□□□□ 0.5
PDLIM5-220ENST00000514830 TSPY4P0CV99 314 aa18.18■□□□□ 0.5
PDLIM5-220ENST00000514830 TSPY10P0CW01 314 aa18.18■□□□□ 0.5
PDLIM5-220ENST00000514830 AFAP1Q8N556 730 aa18.18■□□□□ 0.5
PDLIM5-220ENST00000514830 RAPGEF3O95398 923 aa18.17■□□□□ 0.5
PDLIM5-220ENST00000514830 ILDR1Q86SU0 546 aaPredicted RBP18.17■□□□□ 0.5
PDLIM5-220ENST00000514830 SPAG9O60271 1321 aaKnown RBP18.17■□□□□ 0.5
PDLIM5-220ENST00000514830 NCOA1Q15788 1441 aa18.15■□□□□ 0.5
PDLIM5-220ENST00000514830 ARHGEF40Q8TER5 1519 aa18.14■□□□□ 0.49
PDLIM5-220ENST00000514830 REREQ9P2R6 1566 aa18.14■□□□□ 0.49
PDLIM5-220ENST00000514830 ABCA6Q8N139 1617 aa18.14■□□□□ 0.49
PDLIM5-220ENST00000514830 GCC2Q8IWJ2 1684 aa18.14■□□□□ 0.49
PDLIM5-220ENST00000514830 DIP2CQ9Y2E4 1556 aa18.13■□□□□ 0.49
PDLIM5-220ENST00000514830 ANKRD30AQ9BXX3 1397 aa18.13■□□□□ 0.49
PDLIM5-220ENST00000514830 BCORL1Q5H9F3 1711 aa18.11■□□□□ 0.49
PDLIM5-220ENST00000514830 DUOX2Q9NRD8 1548 aa18.1■□□□□ 0.49
PDLIM5-220ENST00000514830 HFM1A2PYH4 1435 aa18.1■□□□□ 0.49
PDLIM5-220ENST00000514830 EIF2AK4Q9P2K8 1649 aaKnown RBP18.09■□□□□ 0.49
PDLIM5-220ENST00000514830 YEATS2Q9ULM3 1422 aa18.08■□□□□ 0.49
PDLIM5-220ENST00000514830 ATP10AO60312 1499 aa18.07■□□□□ 0.48
PDLIM5-220ENST00000514830 KIF15Q9NS87 1388 aa18.07■□□□□ 0.48
PDLIM5-220ENST00000514830 ITGAEP38570 1179 aa18.07■□□□□ 0.48
PDLIM5-220ENST00000514830 NAIPQ13075 1403 aa18.06■□□□□ 0.48
PDLIM5-220ENST00000514830 ERBINQ96RT1 1412 aa18.06■□□□□ 0.48
PDLIM5-220ENST00000514830 CHIC2Q9UKJ5 165 aa18.05■□□□□ 0.48
PDLIM5-220ENST00000514830 A2MP01023 1474 aa18.05■□□□□ 0.48
PDLIM5-220ENST00000514830 DHX29Q7Z478 1369 aaKnown RBP18.04■□□□□ 0.48
PDLIM5-220ENST00000514830 AGLP35573 1532 aa18.04■□□□□ 0.48
PDLIM5-220ENST00000514830 ANKRD50Q9ULJ7 1429 aa18.01■□□□□ 0.47
PDLIM5-220ENST00000514830 DEPDC5O75140 1603 aa18.01■□□□□ 0.47
PDLIM5-220ENST00000514830 ACIN1Q9UKV3 1341 aaKnown RBP18■□□□□ 0.47
PDLIM5-220ENST00000514830 SETD5Q9C0A6 1442 aa18■□□□□ 0.47
PDLIM5-220ENST00000514830 RRP7BPQ9NSQ0 103 aa18■□□□□ 0.47
PDLIM5-220ENST00000514830 RNF17Q9BXT8 1623 aaKnown RBP18■□□□□ 0.47
PDLIM5-220ENST00000514830 SIGLEC1Q9BZZ2 1709 aa18■□□□□ 0.47
PDLIM5-220ENST00000514830 HRCP23327 699 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms