RNA–Protein interactions for RNA: ENST00000514830.5

PDLIM5-220, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 802 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-220ENST00000514830 NISCHQ9Y2I1 1504 aa28.48■■■□□ 2.15
PDLIM5-220ENST00000514830 CCDC180Q9P1Z9 1646 aa25.23■■□□□ 1.63
PDLIM5-220ENST00000514830 ABCC9O60706 1549 aa24.06■■□□□ 1.44
PDLIM5-220ENST00000514830 ZCCHC6Q5VYS8 1495 aaKnown RBP23.83■■□□□ 1.41
PDLIM5-220ENST00000514830 DCAF1Q9Y4B6 1507 aa23.69■■□□□ 1.38
PDLIM5-220ENST00000514830 MYO15BQ96JP2 1530 aa23.64■■□□□ 1.38
PDLIM5-220ENST00000514830 NACADO15069 1562 aa23.57■■□□□ 1.36
PDLIM5-220ENST00000514830 RB1CC1Q8TDY2 1594 aa23.46■■□□□ 1.35
PDLIM5-220ENST00000514830 DCAF8L2P0C7V8 631 aa23.36■■□□□ 1.33
PDLIM5-220ENST00000514830 UNC13AQ9UPW8 1703 aa22.99■■□□□ 1.27
PDLIM5-220ENST00000514830 SCRIBQ14160 1630 aa22.9■■□□□ 1.26
PDLIM5-220ENST00000514830 DNAJC5BQ9UF47 199 aa22.74■■□□□ 1.23
PDLIM5-220ENST00000514830 BICRAQ9NZM4 1560 aa22.74■■□□□ 1.23
PDLIM5-220ENST00000514830 SHROOM4Q9ULL8 1493 aa22.64■■□□□ 1.21
PDLIM5-220ENST00000514830 PABPN1Q86U42 306 aaKnown RBP eCLIP22.47■■□□□ 1.19
PDLIM5-220ENST00000514830 EIF4G1Q04637 1599 aaKnown RBP22.08■■□□□ 1.12
PDLIM5-220ENST00000514830 BAZ1AQ9NRL2 1556 aaPredicted RBP22.07■■□□□ 1.12
PDLIM5-220ENST00000514830 CECR2Q9BXF3 1484 aa22.06■■□□□ 1.12
PDLIM5-220ENST00000514830 SMARCA4P51532 1647 aa22.02■■□□□ 1.12
PDLIM5-220ENST00000514830 MROH2BQ7Z745 1585 aa21.91■■□□□ 1.1
PDLIM5-220ENST00000514830 PEG3Q9GZU2 1588 aa21.87■■□□□ 1.09
PDLIM5-220ENST00000514830 CC2D2AQ9P2K1 1620 aa21.86■■□□□ 1.09
PDLIM5-220ENST00000514830 RSF1Q96T23 1441 aaPredicted RBP21.82■■□□□ 1.08
PDLIM5-220ENST00000514830 SMARCA2P51531 1590 aa21.79■■□□□ 1.08
PDLIM5-220ENST00000514830 ATAD2BQ9ULI0 1458 aa21.75■■□□□ 1.07
PDLIM5-220ENST00000514830 WIZO95785 1651 aa21.72■■□□□ 1.07
PDLIM5-220ENST00000514830 NCAPD3P42695 1498 aa21.71■■□□□ 1.07
PDLIM5-220ENST00000514830 HMGXB3Q12766 1538 aa21.68■■□□□ 1.06
PDLIM5-220ENST00000514830 BAZ1BQ9UIG0 1483 aaKnown RBP21.58■■□□□ 1.04
PDLIM5-220ENST00000514830 TOP2AP11388 1531 aaKnown RBP21.55■■□□□ 1.04
PDLIM5-220ENST00000514830 SUPT5HO00267 1087 aaKnown RBP21.43■■□□□ 1.02
PDLIM5-220ENST00000514830 DNAJC5Q9H3Z4 198 aa21.27■■□□□ 1
PDLIM5-220ENST00000514830 CCDC88BA6NC98 1476 aa21.24■□□□□ 0.99
PDLIM5-220ENST00000514830 LAMC3Q9Y6N6 1575 aa21.09■□□□□ 0.97
PDLIM5-220ENST00000514830 CADPSQ9ULU8 1353 aa21.06■□□□□ 0.96
PDLIM5-220ENST00000514830 PRDM2Q13029 1718 aa21.06■□□□□ 0.96
PDLIM5-220ENST00000514830 CFTRP13569 1480 aa21.06■□□□□ 0.96
PDLIM5-220ENST00000514830 NESP48681 1621 aa20.96■□□□□ 0.95
PDLIM5-220ENST00000514830 CUX2O14529 1486 aa20.94■□□□□ 0.94
PDLIM5-220ENST00000514830 ERCC6Q03468 1493 aa20.93■□□□□ 0.94
PDLIM5-220ENST00000514830 PDS5BQ9NTI5 1447 aa20.87■□□□□ 0.93
PDLIM5-220ENST00000514830 KIF21AQ7Z4S6 1674 aa20.81■□□□□ 0.92
PDLIM5-220ENST00000514830 FANCD2Q9BXW9 1451 aa20.8■□□□□ 0.92
PDLIM5-220ENST00000514830 AEBP2Q6ZN18 517 aaPredicted RBP20.76■□□□□ 0.91
PDLIM5-220ENST00000514830 CEP164Q9UPV0 1460 aa20.75■□□□□ 0.91
PDLIM5-220ENST00000514830 THOC2Q8NI27 1593 aaKnown RBP20.65■□□□□ 0.9
PDLIM5-220ENST00000514830 MRC2Q9UBG0 1479 aa20.63■□□□□ 0.89
PDLIM5-220ENST00000514830 ABCC8Q09428 1581 aa20.62■□□□□ 0.89
PDLIM5-220ENST00000514830 WDR62O43379 1518 aa20.59■□□□□ 0.89
PDLIM5-220ENST00000514830 DNMBPQ6XZF7 1577 aa20.59■□□□□ 0.89
PDLIM5-220ENST00000514830 URB2Q14146 1524 aaKnown RBP20.58■□□□□ 0.88
PDLIM5-220ENST00000514830 BIVM-ERCC5R4GMW8 1640 aa20.56■□□□□ 0.88
PDLIM5-220ENST00000514830 WRNQ14191 1432 aaPredicted RBP eCLIP20.55■□□□□ 0.88
PDLIM5-220ENST00000514830 CUX1P39880 1505 aa20.54■□□□□ 0.88
PDLIM5-220ENST00000514830 TOP2BQ02880 1626 aa20.54■□□□□ 0.88
PDLIM5-220ENST00000514830 TOPBP1Q92547 1522 aa20.53■□□□□ 0.88
PDLIM5-220ENST00000514830 SYNJ1O43426 1573 aa20.51■□□□□ 0.87
PDLIM5-220ENST00000514830 POLA1P09884 1462 aaPredicted RBP20.38■□□□□ 0.85
PDLIM5-220ENST00000514830 FGD5Q6ZNL6 1462 aa20.38■□□□□ 0.85
PDLIM5-220ENST00000514830 CHIC1Q5VXU3 224 aa20.35■□□□□ 0.85
PDLIM5-220ENST00000514830 TARBP1Q13395 1621 aaKnown RBP20.33■□□□□ 0.84
PDLIM5-220ENST00000514830 WDR97A6NE52 1622 aa20.31■□□□□ 0.84
PDLIM5-220ENST00000514830 IFT140Q96RY7 1462 aa20.3■□□□□ 0.84
PDLIM5-220ENST00000514830 TRIM41Q8WV44 630 aa20.28■□□□□ 0.84
PDLIM5-220ENST00000514830 SOGA1O94964 1423 aa20.27■□□□□ 0.84
PDLIM5-220ENST00000514830 ABCA10Q8WWZ4 1543 aa20.27■□□□□ 0.83
PDLIM5-220ENST00000514830 RAD54L2Q9Y4B4 1467 aa20.24■□□□□ 0.83
PDLIM5-220ENST00000514830 ABCA5Q8WWZ7 1642 aa20.17■□□□□ 0.82
PDLIM5-220ENST00000514830 EIF4G3O43432 1585 aaKnown RBP20.13■□□□□ 0.81
PDLIM5-220ENST00000514830 ZNF608Q9ULD9 1512 aaPredicted RBP20.12■□□□□ 0.81
PDLIM5-220ENST00000514830 KIF27Q86VH2 1401 aa20.1■□□□□ 0.81
PDLIM5-220ENST00000514830 GAPVD1Q14C86 1478 aa20.08■□□□□ 0.81
PDLIM5-220ENST00000514830 PBRM1Q86U86 1689 aa20.07■□□□□ 0.8
PDLIM5-220ENST00000514830 EEA1Q15075 1411 aa20.07■□□□□ 0.8
PDLIM5-220ENST00000514830 TDRD9Q8NDG6 1382 aaKnown RBP20.06■□□□□ 0.8
PDLIM5-220ENST00000514830 ERICH3Q5RHP9 1530 aa20.05■□□□□ 0.8
PDLIM5-220ENST00000514830 AQRO60306 1485 aaKnown RBP eCLIP20.05■□□□□ 0.8
PDLIM5-220ENST00000514830 OSCARQ8IYS5 282 aa20.03■□□□□ 0.8
PDLIM5-220ENST00000514830 GRIN2BQ13224 1484 aa20.03■□□□□ 0.8
PDLIM5-220ENST00000514830 RUSC2Q8N2Y8 1516 aa19.99■□□□□ 0.79
PDLIM5-220ENST00000514830 CUL7Q14999 1698 aa19.97■□□□□ 0.79
PDLIM5-220ENST00000514830 MAGI1Q96QZ7 1491 aaPredicted RBP19.96■□□□□ 0.79
PDLIM5-220ENST00000514830 IGF1RP08069 1367 aa19.95■□□□□ 0.78
PDLIM5-220ENST00000514830 ADAMTS12P58397 1594 aa19.92■□□□□ 0.78
PDLIM5-220ENST00000514830 SNAPC4Q5SXM2 1469 aa19.9■□□□□ 0.78
PDLIM5-220ENST00000514830 FHAD1B1AJZ9 1412 aa19.87■□□□□ 0.77
PDLIM5-220ENST00000514830 CSRNP3Q8WYN3 585 aa19.87■□□□□ 0.77
PDLIM5-220ENST00000514830 SYNJ2O15056 1496 aa19.86■□□□□ 0.77
PDLIM5-220ENST00000514830 PRXQ9BXM0 1461 aa19.86■□□□□ 0.77
PDLIM5-220ENST00000514830 KIF21BO75037 1637 aa19.84■□□□□ 0.77
PDLIM5-220ENST00000514830 CARMIL1Q5VZK9 1371 aa19.83■□□□□ 0.76
PDLIM5-220ENST00000514830 CHD1O14646 1710 aa19.81■□□□□ 0.76
PDLIM5-220ENST00000514830 RAPGEF2Q9Y4G8 1499 aa19.79■□□□□ 0.76
PDLIM5-220ENST00000514830 GRIN2AQ12879 1464 aa19.78■□□□□ 0.76
PDLIM5-220ENST00000514830 FAM9AQ8IZU1 332 aaPredicted RBP19.75■□□□□ 0.75
PDLIM5-220ENST00000514830 CHMP7Q8WUX9 453 aaPredicted RBP19.71■□□□□ 0.75
PDLIM5-220ENST00000514830 NUP160Q12769 1436 aa19.69■□□□□ 0.74
PDLIM5-220ENST00000514830 GOLGA3Q08378 1498 aa19.69■□□□□ 0.74
PDLIM5-220ENST00000514830 CTTNBP2Q8WZ74 1663 aa19.66■□□□□ 0.74
PDLIM5-220ENST00000514830 CEP170Q5SW79 1584 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms