RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 L3MBTL2Q969R5 705 aa9.51□□□□□ -0.89
LIMCH1-207ENST00000508466 RRBP1Q9P2E9 1410 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-207ENST00000508466 BCL11BQ9C0K0 894 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-207ENST00000508466 ARID3CA6NKF2 412 aa9.5□□□□□ -0.89
LIMCH1-207ENST00000508466 SEC24BO95487 1268 aa9.5□□□□□ -0.89
LIMCH1-207ENST00000508466 AAMPQ13685 434 aa9.5□□□□□ -0.89
LIMCH1-207ENST00000508466 FAM13BQ9NYF5 915 aa9.5□□□□□ -0.89
LIMCH1-207ENST00000508466 RRP9O43818 475 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-207ENST00000508466 ERBB4Q15303 1308 aa9.49□□□□□ -0.89
LIMCH1-207ENST00000508466 NBPF8Q3BBV2 869 aa9.48□□□□□ -0.89
LIMCH1-207ENST00000508466 KIF7Q2M1P5 1343 aa9.48□□□□□ -0.89
LIMCH1-207ENST00000508466 PDE4CQ08493 712 aa9.47□□□□□ -0.89
LIMCH1-207ENST00000508466 SMG6Q86US8 1419 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-207ENST00000508466 SLC24A1O60721 1099 aa9.47□□□□□ -0.89
LIMCH1-207ENST00000508466 FGD1P98174 961 aa9.47□□□□□ -0.89
LIMCH1-207ENST00000508466 GOLGA6L3A6NEY3 463 aa9.45□□□□□ -0.9
LIMCH1-207ENST00000508466 PABPN1Q86U42 306 aaKnown RBP eCLIP9.45□□□□□ -0.9
LIMCH1-207ENST00000508466 PNISRQ8TF01 805 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-207ENST00000508466 C8orf34Q49A92 452 aa9.45□□□□□ -0.9
LIMCH1-207ENST00000508466 CCDC7Q96M83 1385 aa9.44□□□□□ -0.9
LIMCH1-207ENST00000508466 RNF123Q5XPI4 1314 aa9.44□□□□□ -0.9
LIMCH1-207ENST00000508466 CNTLNQ9NXG0 1405 aa9.43□□□□□ -0.9
LIMCH1-207ENST00000508466 MS4A1P11836 297 aa9.43□□□□□ -0.9
LIMCH1-207ENST00000508466 EIF4G1Q04637 1599 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-207ENST00000508466 PRDM4Q9UKN5 801 aa9.42□□□□□ -0.9
LIMCH1-207ENST00000508466 AQRO60306 1485 aaKnown RBP eCLIP9.42□□□□□ -0.9
LIMCH1-207ENST00000508466 PLCD3Q8N3E9 789 aa9.42□□□□□ -0.9
LIMCH1-207ENST00000508466 JARID2Q92833 1246 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-207ENST00000508466 FAM161AQ3B820 660 aa9.42□□□□□ -0.9
LIMCH1-207ENST00000508466 KIAA1211Q6ZU35 1233 aa9.42□□□□□ -0.9
LIMCH1-207ENST00000508466 CHMP4BQ9H444 224 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-207ENST00000508466 VGLL3A8MV65 326 aa9.41□□□□□ -0.9
LIMCH1-207ENST00000508466 CLCN1P35523 988 aa9.41□□□□□ -0.9
LIMCH1-207ENST00000508466 FOXD4L1Q9NU39 408 aa9.41□□□□□ -0.9
LIMCH1-207ENST00000508466 BAZ1AQ9NRL2 1556 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-207ENST00000508466 ESPNB1AK53 854 aa9.4□□□□□ -0.9
LIMCH1-207ENST00000508466 IGSF3O75054 1194 aa9.4□□□□□ -0.9
LIMCH1-207ENST00000508466 BBXQ8WY36 941 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-207ENST00000508466 MYH16Q9H6N6 1097 aa9.4□□□□□ -0.91
LIMCH1-207ENST00000508466 CC2D1BQ5T0F9 858 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-207ENST00000508466 L1TD1Q5T7N2 865 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-207ENST00000508466 MPNDQ8N594 471 aa9.39□□□□□ -0.91
LIMCH1-207ENST00000508466 TRIM44Q96DX7 344 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-207ENST00000508466 KDM2AQ9Y2K7 1162 aa9.39□□□□□ -0.91
LIMCH1-207ENST00000508466 CUX2O14529 1486 aa9.38□□□□□ -0.91
LIMCH1-207ENST00000508466 R3HCC1Q9Y3T6 440 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-207ENST00000508466 TSC1Q92574 1164 aa9.37□□□□□ -0.91
LIMCH1-207ENST00000508466 NCAPD3P42695 1498 aa9.37□□□□□ -0.91
LIMCH1-207ENST00000508466 SYNJ1O43426 1573 aa9.37□□□□□ -0.91
LIMCH1-207ENST00000508466 FAM177BA6PVY3 158 aa9.37□□□□□ -0.91
LIMCH1-207ENST00000508466 TRAK2O60296 914 aa9.36□□□□□ -0.91
LIMCH1-207ENST00000508466 GAS2L3Q86XJ1 694 aa9.36□□□□□ -0.91
LIMCH1-207ENST00000508466 ZBTB22O15209 634 aa9.35□□□□□ -0.91
LIMCH1-207ENST00000508466 PDCL3Q9H2J4 239 aa9.35□□□□□ -0.91
LIMCH1-207ENST00000508466 IGHDP01880 384 aa9.35□□□□□ -0.91
LIMCH1-207ENST00000508466 RIPK4P57078 832 aa9.34□□□□□ -0.91
LIMCH1-207ENST00000508466 SMARCA2P51531 1590 aa9.33□□□□□ -0.92
LIMCH1-207ENST00000508466 PTPRKQ15262 1439 aa9.33□□□□□ -0.92
LIMCH1-207ENST00000508466 GRPEL1Q9HAV7 217 aa9.33□□□□□ -0.92
LIMCH1-207ENST00000508466 FHAD1B1AJZ9 1412 aa9.33□□□□□ -0.92
LIMCH1-207ENST00000508466 MCM4P33991 863 aa9.33□□□□□ -0.92
LIMCH1-207ENST00000508466 XPCQ01831 940 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-207ENST00000508466 MPHOSPH9Q99550 1183 aa9.33□□□□□ -0.92
LIMCH1-207ENST00000508466 TBC1D2Q9BYX2 928 aa9.33□□□□□ -0.92
LIMCH1-207ENST00000508466 USP19O94966 1318 aa9.32□□□□□ -0.92
LIMCH1-207ENST00000508466 BCAR3O75815 825 aa9.32□□□□□ -0.92
LIMCH1-207ENST00000508466 TPRNQ4KMQ1 711 aa9.32□□□□□ -0.92
LIMCH1-207ENST00000508466 PAXIP1Q6ZW49 1069 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-207ENST00000508466 ARHGAP35Q9NRY4 1499 aa9.31□□□□□ -0.92
LIMCH1-207ENST00000508466 PEG3Q9GZU2 1588 aa9.31□□□□□ -0.92
LIMCH1-207ENST00000508466 TOP2AP11388 1531 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-207ENST00000508466 CCDC18Q5T9S5 1454 aa9.3□□□□□ -0.92
LIMCH1-207ENST00000508466 CCDC146Q8IYE0 955 aa9.3□□□□□ -0.92
LIMCH1-207ENST00000508466 NCLP19338 710 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-207ENST00000508466 BECN1Q14457 450 aa9.3□□□□□ -0.92
LIMCH1-207ENST00000508466 CBX1P83916 185 aa9.29□□□□□ -0.92
LIMCH1-207ENST00000508466 CALD1Q05682 793 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-207ENST00000508466 NCOA1Q15788 1441 aa9.29□□□□□ -0.92
LIMCH1-207ENST00000508466 NAP1L2Q9ULW6 460 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-207ENST00000508466 KTN1Q86UP2 1357 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-207ENST00000508466 FSD2A1L4K1 749 aa9.28□□□□□ -0.92
LIMCH1-207ENST00000508466 PDIA4P13667 645 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-207ENST00000508466 MFAP1P55081 439 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-207ENST00000508466 CENPQQ7L2Z9 268 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-207ENST00000508466 DHX29Q7Z478 1369 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-207ENST00000508466 KDM2BQ8NHM5 1336 aa9.28□□□□□ -0.92
LIMCH1-207ENST00000508466 ST20-MTHFSA0A0A6YYL1 179 aa9.28□□□□□ -0.92
LIMCH1-207ENST00000508466 GTF2E1P29083 439 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-207ENST00000508466 PANK1Q8TE04 598 aa9.28□□□□□ -0.92
LIMCH1-207ENST00000508466 ANTXR1Q9H6X2 564 aa9.28□□□□□ -0.92
LIMCH1-207ENST00000508466 COG6Q9Y2V7 657 aa9.28□□□□□ -0.92
LIMCH1-207ENST00000508466 MRE11P49959 708 aa9.27□□□□□ -0.93
LIMCH1-207ENST00000508466 SLC4A1APQ9BWU0 796 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-207ENST00000508466 BCL2L13Q9BXK5 485 aa9.27□□□□□ -0.93
LIMCH1-207ENST00000508466 CLUAP1Q96AJ1 413 aa9.27□□□□□ -0.93
LIMCH1-207ENST00000508466 E9PSI1 815 aa9.26□□□□□ -0.93
LIMCH1-207ENST00000508466 NEUROD2Q15784 382 aa9.26□□□□□ -0.93
LIMCH1-207ENST00000508466 CHMP4AQ9BY43 222 aa9.26□□□□□ -0.93
LIMCH1-207ENST00000508466 UQCRHLA0A096LP55 91 aa9.26□□□□□ -0.93
LIMCH1-207ENST00000508466 SPDYE4A6NLX3 237 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms