RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 MIA2Q96PC5 1412 aa11.1□□□□□ -0.63
NUP54-204ENST00000506098 RRBP1Q9P2E9 1410 aaKnown RBP11.1□□□□□ -0.63
NUP54-204ENST00000506098 KCNH8Q96L42 1107 aa11.1□□□□□ -0.63
NUP54-204ENST00000506098 CCNB3Q8WWL7 1395 aa11.1□□□□□ -0.63
NUP54-204ENST00000506098 TCOF1Q13428 1488 aaKnown RBP11.09□□□□□ -0.63
NUP54-204ENST00000506098 PLCH2O75038 1416 aa11.09□□□□□ -0.63
NUP54-204ENST00000506098 FGD6Q6ZV73 1430 aa11.09□□□□□ -0.63
NUP54-204ENST00000506098 CROCC2H7BZ55 1655 aa11.08□□□□□ -0.64
NUP54-204ENST00000506098 SAMD9LQ8IVG5 1584 aa11.08□□□□□ -0.64
NUP54-204ENST00000506098 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.08□□□□□ -0.64
NUP54-204ENST00000506098 MYT1Q01538 1121 aa11.07□□□□□ -0.64
NUP54-204ENST00000506098 ARHGAP5Q13017 1502 aa11.06□□□□□ -0.64
NUP54-204ENST00000506098 CD109Q6YHK3 1445 aa11.06□□□□□ -0.64
NUP54-204ENST00000506098 DNMT1P26358 1616 aaKnown RBP11.06□□□□□ -0.64
NUP54-204ENST00000506098 CAMSAP2Q08AD1 1489 aa11.05□□□□□ -0.64
NUP54-204ENST00000506098 ARHGEF5Q12774 1597 aa11.04□□□□□ -0.64
NUP54-204ENST00000506098 ADGBQ8N7X0 1667 aa11.04□□□□□ -0.64
NUP54-204ENST00000506098 ABCC1P33527 1531 aa11.04□□□□□ -0.64
NUP54-204ENST00000506098 TRIM26Q12899 539 aaPredicted RBP11.03□□□□□ -0.64
NUP54-204ENST00000506098 RICTORQ6R327 1708 aa11.03□□□□□ -0.64
NUP54-204ENST00000506098 FANCAO15360 1455 aa11.02□□□□□ -0.65
NUP54-204ENST00000506098 PLEKHH2Q8IVE3 1493 aa11.02□□□□□ -0.65
NUP54-204ENST00000506098 NEO1Q92859 1461 aa11.02□□□□□ -0.65
NUP54-204ENST00000506098 FAM69CQ0P6D2 419 aa11.02□□□□□ -0.65
NUP54-204ENST00000506098 CFDP1Q9UEE9 299 aaPredicted RBP11.02□□□□□ -0.65
NUP54-204ENST00000506098 EFCAB2Q5VUJ9 269 aa11.01□□□□□ -0.65
NUP54-204ENST00000506098 PELP1Q8IZL8 1130 aaKnown RBP11.01□□□□□ -0.65
NUP54-204ENST00000506098 KIAA1107Q9UPP5 1409 aa11.01□□□□□ -0.65
NUP54-204ENST00000506098 TEX14Q8IWB6 1497 aa11□□□□□ -0.65
NUP54-204ENST00000506098 MBD5Q9P267 1494 aa11□□□□□ -0.65
NUP54-204ENST00000506098 SYCP2Q9BX26 1530 aa10.99□□□□□ -0.65
NUP54-204ENST00000506098 MAST1Q9Y2H9 1570 aa10.99□□□□□ -0.65
NUP54-204ENST00000506098 AKNAQ7Z591 1439 aa10.99□□□□□ -0.65
NUP54-204ENST00000506098 ARHGEF12Q9NZN5 1544 aa10.99□□□□□ -0.65
NUP54-204ENST00000506098 ZNF644Q9H582 1327 aaPredicted RBP10.98□□□□□ -0.65
NUP54-204ENST00000506098 GCC2Q8IWJ2 1684 aa10.98□□□□□ -0.65
NUP54-204ENST00000506098 ADGRL1O94910 1474 aa10.97□□□□□ -0.65
NUP54-204ENST00000506098 KIDINS220Q9ULH0 1771 aa10.96□□□□□ -0.65
NUP54-204ENST00000506098 KDM5CP41229 1560 aa10.96□□□□□ -0.65
NUP54-204ENST00000506098 SHANK2Q9UPX8 1470 aa10.96□□□□□ -0.65
NUP54-204ENST00000506098 DAPK1P53355 1430 aa10.96□□□□□ -0.65
NUP54-204ENST00000506098 FAM50AQ14320 339 aaKnown RBP10.96□□□□□ -0.65
NUP54-204ENST00000506098 RSPH4AQ5TD94 716 aa10.96□□□□□ -0.65
NUP54-204ENST00000506098 ZNF777Q9ULD5 760 aaPredicted RBP10.96□□□□□ -0.65
NUP54-204ENST00000506098 CCDC141Q6ZP82 1450 aa10.95□□□□□ -0.66
NUP54-204ENST00000506098 ABCC5O15440 1437 aa10.95□□□□□ -0.66
NUP54-204ENST00000506098 PLXNC1O60486 1568 aa10.94□□□□□ -0.66
NUP54-204ENST00000506098 FRMPD1Q5SYB0 1578 aa10.94□□□□□ -0.66
NUP54-204ENST00000506098 INO80Q9ULG1 1556 aaPredicted RBP10.94□□□□□ -0.66
NUP54-204ENST00000506098 ADGRL2O95490 1459 aa10.93□□□□□ -0.66
NUP54-204ENST00000506098 PTPRKQ15262 1439 aa10.93□□□□□ -0.66
NUP54-204ENST00000506098 SCAPERQ9BY12 1400 aa10.93□□□□□ -0.66
NUP54-204ENST00000506098 HNRNPMP52272 730 aaKnown RBP eCLIP10.93□□□□□ -0.661e-7■■■■□ 25.9
NUP54-204ENST00000506098 ZNF518AQ6AHZ1 1483 aa10.93□□□□□ -0.66
NUP54-204ENST00000506098 TRAPPC8Q9Y2L5 1435 aa10.92□□□□□ -0.66
NUP54-204ENST00000506098 HECW2Q9P2P5 1572 aa10.92□□□□□ -0.66
NUP54-204ENST00000506098 TRHP20396 242 aaPredicted RBP10.92□□□□□ -0.66
NUP54-204ENST00000506098 ZMYM4Q5VZL5 1548 aa10.92□□□□□ -0.66
NUP54-204ENST00000506098 DENND4BO75064 1496 aaPredicted RBP10.92□□□□□ -0.66
NUP54-204ENST00000506098 POGZQ7Z3K3 1410 aa10.92□□□□□ -0.66
NUP54-204ENST00000506098 RTEL1-TNFRSF6BF6WH68 1400 aa10.91□□□□□ -0.66
NUP54-204ENST00000506098 ROCK1Q13464 1354 aa10.9□□□□□ -0.66
NUP54-204ENST00000506098 ATP7AQ04656 1500 aa10.9□□□□□ -0.66
NUP54-204ENST00000506098 ZFYVE16Q7Z3T8 1539 aa10.9□□□□□ -0.66
NUP54-204ENST00000506098 C9orf84Q5VXU9 1444 aa10.9□□□□□ -0.66
NUP54-204ENST00000506098 MLH3Q9UHC1 1453 aa10.89□□□□□ -0.67
NUP54-204ENST00000506098 KDM6BO15054 1643 aa10.89□□□□□ -0.67
NUP54-204ENST00000506098 BCORL1Q5H9F3 1711 aa10.89□□□□□ -0.67
NUP54-204ENST00000506098 ABCA6Q8N139 1617 aa10.88□□□□□ -0.67
NUP54-204ENST00000506098 TSPY4P0CV99 314 aa10.88□□□□□ -0.67
NUP54-204ENST00000506098 TSPY10P0CW01 314 aa10.88□□□□□ -0.67
NUP54-204ENST00000506098 NCOA1Q15788 1441 aa10.88□□□□□ -0.67
NUP54-204ENST00000506098 PLPPR3Q6T4P5 718 aa10.88□□□□□ -0.67
NUP54-204ENST00000506098 PCGF6Q9BYE7 350 aa10.88□□□□□ -0.67
NUP54-204ENST00000506098 COL17A1Q9UMD9 1497 aaPredicted RBP10.87□□□□□ -0.67
NUP54-204ENST00000506098 HFM1A2PYH4 1435 aa10.87□□□□□ -0.67
NUP54-204ENST00000506098 MAGI2Q86UL8 1455 aa10.87□□□□□ -0.67
NUP54-204ENST00000506098 ITGAEP38570 1179 aa10.86□□□□□ -0.67
NUP54-204ENST00000506098 AFAP1Q8N556 730 aa10.86□□□□□ -0.67
NUP54-204ENST00000506098 EIF2AK4Q9P2K8 1649 aaKnown RBP10.86□□□□□ -0.67
NUP54-204ENST00000506098 ANKRD30AQ9BXX3 1397 aa10.86□□□□□ -0.67
NUP54-204ENST00000506098 DIP2CQ9Y2E4 1556 aa10.86□□□□□ -0.67
NUP54-204ENST00000506098 NAIPQ13075 1403 aa10.85□□□□□ -0.67
NUP54-204ENST00000506098 DUOX2Q9NRD8 1548 aa10.85□□□□□ -0.67
NUP54-204ENST00000506098 REREQ9P2R6 1566 aa10.85□□□□□ -0.67
NUP54-204ENST00000506098 SPAG9O60271 1321 aaKnown RBP10.84□□□□□ -0.67
NUP54-204ENST00000506098 CHIC2Q9UKJ5 165 aa10.84□□□□□ -0.67
NUP54-204ENST00000506098 DEPDC5O75140 1603 aa10.84□□□□□ -0.67
NUP54-204ENST00000506098 SETD5Q9C0A6 1442 aa10.84□□□□□ -0.67
NUP54-204ENST00000506098 RAPGEF3O95398 923 aa10.83□□□□□ -0.68
NUP54-204ENST00000506098 ARHGEF40Q8TER5 1519 aa10.83□□□□□ -0.68
NUP54-204ENST00000506098 SIGLEC1Q9BZZ2 1709 aa10.82□□□□□ -0.68
NUP54-204ENST00000506098 HRCP23327 699 aa10.82□□□□□ -0.68
NUP54-204ENST00000506098 ERBINQ96RT1 1412 aa10.81□□□□□ -0.68
NUP54-204ENST00000506098 UNC13BO14795 1591 aa10.81□□□□□ -0.68
NUP54-204ENST00000506098 RNF17Q9BXT8 1623 aaKnown RBP10.8□□□□□ -0.68
NUP54-204ENST00000506098 KIF15Q9NS87 1388 aa10.8□□□□□ -0.68
NUP54-204ENST00000506098 RRP7BPQ9NSQ0 103 aa10.8□□□□□ -0.68
NUP54-204ENST00000506098 ANKRD50Q9ULJ7 1429 aa10.79□□□□□ -0.68
NUP54-204ENST00000506098 CFAP65Q6ZU64 1925 aaKnown RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms