RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 NISCHQ9Y2I1 1504 aa17.06■□□□□ 0.32
NUP54-204ENST00000506098 CCDC180Q9P1Z9 1646 aa15.14■□□□□ 0.01
NUP54-204ENST00000506098 ABCC9O60706 1549 aa14.32□□□□□ -0.12
NUP54-204ENST00000506098 ZCCHC6Q5VYS8 1495 aaKnown RBP14.27□□□□□ -0.12
NUP54-204ENST00000506098 DCAF1Q9Y4B6 1507 aa14.18□□□□□ -0.14
NUP54-204ENST00000506098 MYO15BQ96JP2 1530 aa14.12□□□□□ -0.15
NUP54-204ENST00000506098 NACADO15069 1562 aa14.08□□□□□ -0.16
NUP54-204ENST00000506098 RB1CC1Q8TDY2 1594 aa14.01□□□□□ -0.17
NUP54-204ENST00000506098 DCAF8L2P0C7V8 631 aa13.96□□□□□ -0.17
NUP54-204ENST00000506098 UNC13AQ9UPW8 1703 aa13.88□□□□□ -0.19
NUP54-204ENST00000506098 SCRIBQ14160 1630 aa13.72□□□□□ -0.21
NUP54-204ENST00000506098 BICRAQ9NZM4 1560 aa13.6□□□□□ -0.23
NUP54-204ENST00000506098 SHROOM4Q9ULL8 1493 aa13.53□□□□□ -0.24
NUP54-204ENST00000506098 AEBP2Q6ZN18 517 aaPredicted RBP13.52□□□□□ -0.25
NUP54-204ENST00000506098 PABPN1Q86U42 306 aaKnown RBP eCLIP13.38□□□□□ -0.27
NUP54-204ENST00000506098 CHIC1Q5VXU3 224 aa13.33□□□□□ -0.28
NUP54-204ENST00000506098 CECR2Q9BXF3 1484 aa13.21□□□□□ -0.3
NUP54-204ENST00000506098 SMARCA4P51532 1647 aa13.21□□□□□ -0.3
NUP54-204ENST00000506098 BAZ1AQ9NRL2 1556 aaPredicted RBP13.2□□□□□ -0.3
NUP54-204ENST00000506098 EIF4G1Q04637 1599 aaKnown RBP13.18□□□□□ -0.3
NUP54-204ENST00000506098 MROH2BQ7Z745 1585 aa13.13□□□□□ -0.31
NUP54-204ENST00000506098 PEG3Q9GZU2 1588 aa13.1□□□□□ -0.31
NUP54-204ENST00000506098 RSF1Q96T23 1441 aaPredicted RBP13.07□□□□□ -0.32
NUP54-204ENST00000506098 WIZO95785 1651 aa13.07□□□□□ -0.32
NUP54-204ENST00000506098 CC2D2AQ9P2K1 1620 aa13.06□□□□□ -0.32
NUP54-204ENST00000506098 SMARCA2P51531 1590 aa13.03□□□□□ -0.32
NUP54-204ENST00000506098 ATAD2BQ9ULI0 1458 aa12.98□□□□□ -0.33
NUP54-204ENST00000506098 HMGXB3Q12766 1538 aa12.95□□□□□ -0.34
NUP54-204ENST00000506098 NCAPD3P42695 1498 aa12.95□□□□□ -0.34
NUP54-204ENST00000506098 TOP2AP11388 1531 aaKnown RBP12.91□□□□□ -0.34
NUP54-204ENST00000506098 SUPT5HO00267 1087 aaKnown RBP12.89□□□□□ -0.35
NUP54-204ENST00000506098 BAZ1BQ9UIG0 1483 aaKnown RBP12.89□□□□□ -0.35
NUP54-204ENST00000506098 DNAJC5BQ9UF47 199 aa12.84□□□□□ -0.35
NUP54-204ENST00000506098 PRDM2Q13029 1718 aa12.74□□□□□ -0.37
NUP54-204ENST00000506098 CCDC88BA6NC98 1476 aa12.72□□□□□ -0.37
NUP54-204ENST00000506098 LAMC3Q9Y6N6 1575 aa12.6□□□□□ -0.39
NUP54-204ENST00000506098 CFTRP13569 1480 aa12.58□□□□□ -0.4
NUP54-204ENST00000506098 CADPSQ9ULU8 1353 aa12.55□□□□□ -0.4
NUP54-204ENST00000506098 NESP48681 1621 aa12.51□□□□□ -0.41
NUP54-204ENST00000506098 KIF21AQ7Z4S6 1674 aa12.51□□□□□ -0.41
NUP54-204ENST00000506098 PDS5BQ9NTI5 1447 aa12.43□□□□□ -0.42
NUP54-204ENST00000506098 FANCD2Q9BXW9 1451 aa12.41□□□□□ -0.42
NUP54-204ENST00000506098 CEP164Q9UPV0 1460 aa12.38□□□□□ -0.43
NUP54-204ENST00000506098 BIVM-ERCC5R4GMW8 1640 aa12.37□□□□□ -0.43
NUP54-204ENST00000506098 ABCC8Q09428 1581 aa12.37□□□□□ -0.43
NUP54-204ENST00000506098 THOC2Q8NI27 1593 aaKnown RBP12.34□□□□□ -0.43
NUP54-204ENST00000506098 TOP2BQ02880 1626 aa12.33□□□□□ -0.43
NUP54-204ENST00000506098 SYNJ1O43426 1573 aa12.32□□□□□ -0.44
NUP54-204ENST00000506098 DNMBPQ6XZF7 1577 aa12.32□□□□□ -0.44
NUP54-204ENST00000506098 WRNQ14191 1432 aaPredicted RBP eCLIP12.31□□□□□ -0.44
NUP54-204ENST00000506098 ERCC6Q03468 1493 aa12.31□□□□□ -0.44
NUP54-204ENST00000506098 CUX1P39880 1505 aa12.31□□□□□ -0.44
NUP54-204ENST00000506098 MRC2Q9UBG0 1479 aa12.29□□□□□ -0.44
NUP54-204ENST00000506098 URB2Q14146 1524 aaKnown RBP12.29□□□□□ -0.44
NUP54-204ENST00000506098 WDR62O43379 1518 aa12.28□□□□□ -0.44
NUP54-204ENST00000506098 TOPBP1Q92547 1522 aa12.27□□□□□ -0.44
NUP54-204ENST00000506098 WDR97A6NE52 1622 aa12.22□□□□□ -0.45
NUP54-204ENST00000506098 FGD5Q6ZNL6 1462 aa12.2□□□□□ -0.46
NUP54-204ENST00000506098 TARBP1Q13395 1621 aaKnown RBP12.19□□□□□ -0.46
NUP54-204ENST00000506098 TRIM41Q8WV44 630 aa12.18□□□□□ -0.46
NUP54-204ENST00000506098 POLA1P09884 1462 aaPredicted RBP12.18□□□□□ -0.46
NUP54-204ENST00000506098 CUX2O14529 1486 aa12.14□□□□□ -0.47
NUP54-204ENST00000506098 ABCA10Q8WWZ4 1543 aa12.11□□□□□ -0.47
NUP54-204ENST00000506098 IFT140Q96RY7 1462 aa12.11□□□□□ -0.47
NUP54-204ENST00000506098 SOGA1O94964 1423 aa12.11□□□□□ -0.47
NUP54-204ENST00000506098 RAD54L2Q9Y4B4 1467 aa12.1□□□□□ -0.47
NUP54-204ENST00000506098 ABCA5Q8WWZ7 1642 aa12.09□□□□□ -0.47
NUP54-204ENST00000506098 PBRM1Q86U86 1689 aa12.09□□□□□ -0.47
NUP54-204ENST00000506098 EIF4G3O43432 1585 aaKnown RBP12.05□□□□□ -0.48
NUP54-204ENST00000506098 EEA1Q15075 1411 aa12.03□□□□□ -0.48
NUP54-204ENST00000506098 RUSC2Q8N2Y8 1516 aa12.02□□□□□ -0.48
NUP54-204ENST00000506098 KIF27Q86VH2 1401 aa12.02□□□□□ -0.49
NUP54-204ENST00000506098 ZNF608Q9ULD9 1512 aaPredicted RBP12.01□□□□□ -0.49
NUP54-204ENST00000506098 GAPVD1Q14C86 1478 aa12□□□□□ -0.49
NUP54-204ENST00000506098 ERICH3Q5RHP9 1530 aa12□□□□□ -0.49
NUP54-204ENST00000506098 CUL7Q14999 1698 aa12□□□□□ -0.49
NUP54-204ENST00000506098 TDRD9Q8NDG6 1382 aaKnown RBP11.97□□□□□ -0.49
NUP54-204ENST00000506098 AQRO60306 1485 aaKnown RBP eCLIP11.96□□□□□ -0.49
NUP54-204ENST00000506098 GRIN2BQ13224 1484 aa11.95□□□□□ -0.5
NUP54-204ENST00000506098 KIF21BO75037 1637 aa11.94□□□□□ -0.5
NUP54-204ENST00000506098 IGF1RP08069 1367 aa11.93□□□□□ -0.5
NUP54-204ENST00000506098 ADAMTS12P58397 1594 aa11.92□□□□□ -0.5
NUP54-204ENST00000506098 CSRNP3Q8WYN3 585 aa11.92□□□□□ -0.5
NUP54-204ENST00000506098 CHD1O14646 1710 aa11.91□□□□□ -0.5
NUP54-204ENST00000506098 MAGI1Q96QZ7 1491 aaPredicted RBP11.9□□□□□ -0.5
NUP54-204ENST00000506098 PRXQ9BXM0 1461 aa11.89□□□□□ -0.51
NUP54-204ENST00000506098 CTTNBP2Q8WZ74 1663 aa11.88□□□□□ -0.51
NUP54-204ENST00000506098 SNAPC4Q5SXM2 1469 aa11.88□□□□□ -0.51
NUP54-204ENST00000506098 FAM9AQ8IZU1 332 aaPredicted RBP11.87□□□□□ -0.51
NUP54-204ENST00000506098 FHAD1B1AJZ9 1412 aa11.86□□□□□ -0.51
NUP54-204ENST00000506098 CARMIL1Q5VZK9 1371 aa11.86□□□□□ -0.51
NUP54-204ENST00000506098 RAPGEF2Q9Y4G8 1499 aa11.85□□□□□ -0.51
NUP54-204ENST00000506098 SYNJ2O15056 1496 aa11.84□□□□□ -0.51
NUP54-204ENST00000506098 GOLGA3Q08378 1498 aa11.82□□□□□ -0.52
NUP54-204ENST00000506098 GRIN2AQ12879 1464 aa11.81□□□□□ -0.52
NUP54-204ENST00000506098 CEP170Q5SW79 1584 aa11.77□□□□□ -0.53
NUP54-204ENST00000506098 NUP160Q12769 1436 aa11.75□□□□□ -0.53
NUP54-204ENST00000506098 CHMP7Q8WUX9 453 aaPredicted RBP11.74□□□□□ -0.53
NUP54-204ENST00000506098 LOC105371045A0A1W2PR82 267 aa11.73□□□□□ -0.53
NUP54-204ENST00000506098 TNIKQ9UKE5 1360 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms