RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 PLCH2O75038 1416 aa24.3■■□□□ 1.48
HPS4-216ENST00000493455 CFDP1Q9UEE9 299 aaPredicted RBP24.29■■□□□ 1.48
HPS4-216ENST00000493455 MYOM3Q5VTT5 1437 aa24.28■■□□□ 1.48
HPS4-216ENST00000493455 FANCAO15360 1455 aa24.27■■□□□ 1.48
HPS4-216ENST00000493455 TEX14Q8IWB6 1497 aa24.27■■□□□ 1.48
HPS4-216ENST00000493455 CFAP74Q9C0B2 1584 aa24.26■■□□□ 1.47
HPS4-216ENST00000493455 EFCAB2Q5VUJ9 269 aa24.24■■□□□ 1.47
HPS4-216ENST00000493455 ARAP3Q8WWN8 1544 aa24.23■■□□□ 1.47
HPS4-216ENST00000493455 SAMD9LQ8IVG5 1584 aa24.21■■□□□ 1.47
HPS4-216ENST00000493455 PTPN23Q9H3S7 1636 aa24.2■■□□□ 1.46
HPS4-216ENST00000493455 FGD6Q6ZV73 1430 aa24.19■■□□□ 1.46
HPS4-216ENST00000493455 AKNAQ7Z591 1439 aa24.19■■□□□ 1.46
HPS4-216ENST00000493455 ZNF644Q9H582 1327 aaPredicted RBP24.19■■□□□ 1.46
HPS4-216ENST00000493455 NEO1Q92859 1461 aa24.19■■□□□ 1.46
HPS4-216ENST00000493455 ADGRL1O94910 1474 aa24.18■■□□□ 1.46
HPS4-216ENST00000493455 CAMSAP2Q08AD1 1489 aa24.18■■□□□ 1.46
HPS4-216ENST00000493455 FAM50AQ14320 339 aaKnown RBP24.16■■□□□ 1.46
HPS4-216ENST00000493455 MIA2Q96PC5 1412 aa24.16■■□□□ 1.46
HPS4-216ENST00000493455 SYCP2Q9BX26 1530 aa24.15■■□□□ 1.46
HPS4-216ENST00000493455 ABCC1P33527 1531 aa24.14■■□□□ 1.45
HPS4-216ENST00000493455 SCAPERQ9BY12 1400 aa24.12■■□□□ 1.45
HPS4-216ENST00000493455 KDM6BO15054 1643 aa24.12■■□□□ 1.45
HPS4-216ENST00000493455 HNRNPMP52272 730 aaKnown RBP eCLIP24.11■■□□□ 1.45
HPS4-216ENST00000493455 PLEKHH2Q8IVE3 1493 aa24.09■■□□□ 1.45
HPS4-216ENST00000493455 ARHGEF12Q9NZN5 1544 aa24.09■■□□□ 1.45
HPS4-216ENST00000493455 DENND4BO75064 1496 aaPredicted RBP24.07■■□□□ 1.44
HPS4-216ENST00000493455 TCOF1Q13428 1488 aaKnown RBP24.07■■□□□ 1.44
HPS4-216ENST00000493455 RAPGEF3O95398 923 aa24.06■■□□□ 1.44
HPS4-216ENST00000493455 ITGAEP38570 1179 aa24.05■■□□□ 1.44
HPS4-216ENST00000493455 RICTORQ6R327 1708 aa24.04■■□□□ 1.44
HPS4-216ENST00000493455 RRBP1Q9P2E9 1410 aaKnown RBP24.04■■□□□ 1.44
HPS4-216ENST00000493455 TRAPPC8Q9Y2L5 1435 aa24.04■■□□□ 1.44
HPS4-216ENST00000493455 MYT1LQ9UL68 1186 aa24.04■■□□□ 1.44
HPS4-216ENST00000493455 COL17A1Q9UMD9 1497 aaPredicted RBP24.04■■□□□ 1.44
HPS4-216ENST00000493455 POGZQ7Z3K3 1410 aa24.02■■□□□ 1.44
HPS4-216ENST00000493455 KIAA1107Q9UPP5 1409 aa24.02■■□□□ 1.44
HPS4-216ENST00000493455 FRMPD1Q5SYB0 1578 aa24.02■■□□□ 1.44
HPS4-216ENST00000493455 AFAP1Q8N556 730 aa24.01■■□□□ 1.43
HPS4-216ENST00000493455 DNMT1P26358 1616 aaKnown RBP24■■□□□ 1.43
HPS4-216ENST00000493455 ZNF518AQ6AHZ1 1483 aa24■■□□□ 1.43
HPS4-216ENST00000493455 CCDC141Q6ZP82 1450 aa24■■□□□ 1.43
HPS4-216ENST00000493455 MBD5Q9P267 1494 aa24■■□□□ 1.43
HPS4-216ENST00000493455 ARHGEF5Q12774 1597 aa23.99■■□□□ 1.43
HPS4-216ENST00000493455 CROCC2H7BZ55 1655 aa23.99■■□□□ 1.43
HPS4-216ENST00000493455 DAPK1P53355 1430 aa23.96■■□□□ 1.43
HPS4-216ENST00000493455 CHIC2Q9UKJ5 165 aa23.94■■□□□ 1.42
HPS4-216ENST00000493455 KDM5CP41229 1560 aa23.94■■□□□ 1.42
HPS4-216ENST00000493455 HECW2Q9P2P5 1572 aa23.94■■□□□ 1.42
HPS4-216ENST00000493455 ABCC5O15440 1437 aa23.93■■□□□ 1.42
HPS4-216ENST00000493455 SPAG9O60271 1321 aaKnown RBP23.93■■□□□ 1.42
HPS4-216ENST00000493455 TSPY4P0CV99 314 aa23.93■■□□□ 1.42
HPS4-216ENST00000493455 TSPY10P0CW01 314 aa23.93■■□□□ 1.42
HPS4-216ENST00000493455 RSPH4AQ5TD94 716 aa23.91■■□□□ 1.42
HPS4-216ENST00000493455 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.91■■□□□ 1.42
HPS4-216ENST00000493455 C9orf84Q5VXU9 1444 aa23.9■■□□□ 1.42
HPS4-216ENST00000493455 ATP7AQ04656 1500 aa23.89■■□□□ 1.42
HPS4-216ENST00000493455 ZMYM4Q5VZL5 1548 aa23.89■■□□□ 1.42
HPS4-216ENST00000493455 INO80Q9ULG1 1556 aaPredicted RBP23.89■■□□□ 1.41
HPS4-216ENST00000493455 ADGBQ8N7X0 1667 aa23.89■■□□□ 1.41
HPS4-216ENST00000493455 KIDINS220Q9ULH0 1771 aa23.88■■□□□ 1.41
HPS4-216ENST00000493455 ZFYVE16Q7Z3T8 1539 aa23.88■■□□□ 1.41
HPS4-216ENST00000493455 SHANK2Q9UPX8 1470 aa23.86■■□□□ 1.41
HPS4-216ENST00000493455 MAST1Q9Y2H9 1570 aa23.86■■□□□ 1.41
HPS4-216ENST00000493455 PTPRKQ15262 1439 aa23.85■■□□□ 1.41
HPS4-216ENST00000493455 YEATS2Q9ULM3 1422 aa23.85■■□□□ 1.41
HPS4-216ENST00000493455 ABCA6Q8N139 1617 aa23.85■■□□□ 1.41
HPS4-216ENST00000493455 MLH3Q9UHC1 1453 aa23.83■■□□□ 1.41
HPS4-216ENST00000493455 ARHGEF40Q8TER5 1519 aa23.82■■□□□ 1.4
HPS4-216ENST00000493455 TRIM26Q12899 539 aaPredicted RBP23.81■■□□□ 1.4
HPS4-216ENST00000493455 DIP2CQ9Y2E4 1556 aa23.81■■□□□ 1.4
HPS4-216ENST00000493455 RRP7BPQ9NSQ0 103 aa23.8■■□□□ 1.4
HPS4-216ENST00000493455 MAGI2Q86UL8 1455 aa23.8■■□□□ 1.4
HPS4-216ENST00000493455 RTEL1-TNFRSF6BF6WH68 1400 aa23.79■■□□□ 1.4
HPS4-216ENST00000493455 ANKRD30AQ9BXX3 1397 aa23.78■■□□□ 1.4
HPS4-216ENST00000493455 PLXNC1O60486 1568 aa23.78■■□□□ 1.4
HPS4-216ENST00000493455 KIF15Q9NS87 1388 aa23.75■■□□□ 1.39
HPS4-216ENST00000493455 ADGRL2O95490 1459 aa23.75■■□□□ 1.39
HPS4-216ENST00000493455 ATP10AO60312 1499 aa23.73■■□□□ 1.39
HPS4-216ENST00000493455 NCOA1Q15788 1441 aa23.72■■□□□ 1.39
HPS4-216ENST00000493455 A2MP01023 1474 aa23.71■■□□□ 1.39
HPS4-216ENST00000493455 ARID4BQ4LE39 1312 aaPredicted RBP23.7■■□□□ 1.38
HPS4-216ENST00000493455 SIGLEC1Q9BZZ2 1709 aa23.7■■□□□ 1.38
HPS4-216ENST00000493455 ROCK1Q13464 1354 aa23.69■■□□□ 1.38
HPS4-216ENST00000493455 GCC2Q8IWJ2 1684 aa23.69■■□□□ 1.38
HPS4-216ENST00000493455 DUOX2Q9NRD8 1548 aa23.69■■□□□ 1.38
HPS4-216ENST00000493455 PCGF6Q9BYE7 350 aa23.65■■□□□ 1.38
HPS4-216ENST00000493455 DHX29Q7Z478 1369 aaKnown RBP23.65■■□□□ 1.38
HPS4-216ENST00000493455 MLECQ14165 292 aa23.63■■□□□ 1.37
HPS4-216ENST00000493455 REREQ9P2R6 1566 aa23.63■■□□□ 1.37
HPS4-216ENST00000493455 NAIPQ13075 1403 aa23.62■■□□□ 1.37
HPS4-216ENST00000493455 ANKRD50Q9ULJ7 1429 aa23.62■■□□□ 1.37
HPS4-216ENST00000493455 HFM1A2PYH4 1435 aa23.61■■□□□ 1.37
HPS4-216ENST00000493455 KIF3BO15066 747 aa23.61■■□□□ 1.37
HPS4-216ENST00000493455 ERBINQ96RT1 1412 aa23.59■■□□□ 1.37
HPS4-216ENST00000493455 EIF2AK4Q9P2K8 1649 aaKnown RBP23.59■■□□□ 1.37
HPS4-216ENST00000493455 GGT6Q6P531 493 aa23.57■■□□□ 1.36
HPS4-216ENST00000493455 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.56■■□□□ 1.36
HPS4-216ENST00000493455 SETD5Q9C0A6 1442 aa23.56■■□□□ 1.36
HPS4-216ENST00000493455 AGLP35573 1532 aa23.55■■□□□ 1.36
HPS4-216ENST00000493455 BCORL1Q5H9F3 1711 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms