RNA–Protein interactions for RNA: ENST00000486184.1

NUP50-216, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 821 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-216ENST00000486184 PREX2Q70Z35 1606 aa17.75■□□□□ 0.43
NUP50-216ENST00000486184 CDC42BPBQ9Y5S2 1711 aa17.73■□□□□ 0.43
NUP50-216ENST00000486184 NCOA2Q15596 1464 aa17.72■□□□□ 0.43
NUP50-216ENST00000486184 CCNB3Q8WWL7 1395 aa17.72■□□□□ 0.43
NUP50-216ENST00000486184 ARHGAP5Q13017 1502 aa17.72■□□□□ 0.43
NUP50-216ENST00000486184 KANK4Q5T7N3 995 aaPredicted RBP17.71■□□□□ 0.43
NUP50-216ENST00000486184 ARAP3Q8WWN8 1544 aa17.71■□□□□ 0.43
NUP50-216ENST00000486184 PLCH2O75038 1416 aa17.69■□□□□ 0.42
NUP50-216ENST00000486184 FANCAO15360 1455 aa17.69■□□□□ 0.42
NUP50-216ENST00000486184 KDM6BO15054 1643 aa17.67■□□□□ 0.42
NUP50-216ENST00000486184 NEO1Q92859 1461 aa17.67■□□□□ 0.42
NUP50-216ENST00000486184 GPATCH8Q9UKJ3 1502 aaKnown RBP17.65■□□□□ 0.42
NUP50-216ENST00000486184 EFCAB2Q5VUJ9 269 aa17.64■□□□□ 0.41
NUP50-216ENST00000486184 PHLDB1Q86UU1 1377 aa17.64■□□□□ 0.41
NUP50-216ENST00000486184 CFDP1Q9UEE9 299 aaPredicted RBP17.62■□□□□ 0.41
NUP50-216ENST00000486184 AKNAQ7Z591 1439 aa17.62■□□□□ 0.41
NUP50-216ENST00000486184 PPARGC1BQ86YN6 1023 aaKnown RBP17.61■□□□□ 0.41
NUP50-216ENST00000486184 MYOM3Q5VTT5 1437 aa17.61■□□□□ 0.41
NUP50-216ENST00000486184 ADGRL1O94910 1474 aa17.61■□□□□ 0.41
NUP50-216ENST00000486184 MSH5O43196 834 aa17.6■□□□□ 0.41
NUP50-216ENST00000486184 ZNF777Q9ULD5 760 aaPredicted RBP17.6■□□□□ 0.41
NUP50-216ENST00000486184 SAMD9LQ8IVG5 1584 aa17.59■□□□□ 0.41
NUP50-216ENST00000486184 ABCC1P33527 1531 aa17.57■□□□□ 0.4
NUP50-216ENST00000486184 PLEKHH2Q8IVE3 1493 aa17.57■□□□□ 0.4
NUP50-216ENST00000486184 MIA2Q96PC5 1412 aa17.55■□□□□ 0.4
NUP50-216ENST00000486184 RICTORQ6R327 1708 aa17.55■□□□□ 0.4
NUP50-216ENST00000486184 PTPN23Q9H3S7 1636 aa17.55■□□□□ 0.4
NUP50-216ENST00000486184 DENND4BO75064 1496 aaPredicted RBP17.55■□□□□ 0.4
NUP50-216ENST00000486184 CAMSAP2Q08AD1 1489 aa17.55■□□□□ 0.4
NUP50-216ENST00000486184 SCAPERQ9BY12 1400 aa17.55■□□□□ 0.4
NUP50-216ENST00000486184 SYCP2Q9BX26 1530 aa17.54■□□□□ 0.4
NUP50-216ENST00000486184 FGD6Q6ZV73 1430 aa17.52■□□□□ 0.4
NUP50-216ENST00000486184 ZNF518AQ6AHZ1 1483 aa17.5■□□□□ 0.39
NUP50-216ENST00000486184 FRMPD1Q5SYB0 1578 aa17.5■□□□□ 0.39
NUP50-216ENST00000486184 POGZQ7Z3K3 1410 aa17.5■□□□□ 0.39
NUP50-216ENST00000486184 COL17A1Q9UMD9 1497 aaPredicted RBP17.5■□□□□ 0.39
NUP50-216ENST00000486184 KIAA1107Q9UPP5 1409 aa17.49■□□□□ 0.39
NUP50-216ENST00000486184 ZNF644Q9H582 1327 aaPredicted RBP17.47■□□□□ 0.39
NUP50-216ENST00000486184 ARHGEF12Q9NZN5 1544 aa17.47■□□□□ 0.39
NUP50-216ENST00000486184 RAPGEF3O95398 923 aa17.47■□□□□ 0.39
NUP50-216ENST00000486184 ARHGEF5Q12774 1597 aa17.46■□□□□ 0.39
NUP50-216ENST00000486184 HECW2Q9P2P5 1572 aa17.46■□□□□ 0.39
NUP50-216ENST00000486184 TCOF1Q13428 1488 aaKnown RBP17.46■□□□□ 0.39
NUP50-216ENST00000486184 HNRNPMP52272 730 aaKnown RBP eCLIP17.46■□□□□ 0.39
NUP50-216ENST00000486184 MYT1LQ9UL68 1186 aa17.46■□□□□ 0.39
NUP50-216ENST00000486184 ZMYM4Q5VZL5 1548 aa17.46■□□□□ 0.39
NUP50-216ENST00000486184 KDM5CP41229 1560 aa17.45■□□□□ 0.38
NUP50-216ENST00000486184 CROCC2H7BZ55 1655 aa17.45■□□□□ 0.38
NUP50-216ENST00000486184 CCDC141Q6ZP82 1450 aa17.44■□□□□ 0.38
NUP50-216ENST00000486184 FAM50AQ14320 339 aaKnown RBP17.44■□□□□ 0.38
NUP50-216ENST00000486184 TRAPPC8Q9Y2L5 1435 aa17.44■□□□□ 0.38
NUP50-216ENST00000486184 DNMT1P26358 1616 aaKnown RBP17.43■□□□□ 0.38
NUP50-216ENST00000486184 ZFYVE16Q7Z3T8 1539 aa17.42■□□□□ 0.38
NUP50-216ENST00000486184 RSPH4AQ5TD94 716 aa17.42■□□□□ 0.38
NUP50-216ENST00000486184 AFAP1Q8N556 730 aa17.42■□□□□ 0.38
NUP50-216ENST00000486184 MBD5Q9P267 1494 aa17.42■□□□□ 0.38
NUP50-216ENST00000486184 MAGI2Q86UL8 1455 aa17.41■□□□□ 0.38
NUP50-216ENST00000486184 ARHGEF40Q8TER5 1519 aa17.41■□□□□ 0.38
NUP50-216ENST00000486184 INO80Q9ULG1 1556 aaPredicted RBP17.4■□□□□ 0.38
NUP50-216ENST00000486184 ATP7AQ04656 1500 aa17.4■□□□□ 0.38
NUP50-216ENST00000486184 KIDINS220Q9ULH0 1771 aa17.39■□□□□ 0.37
NUP50-216ENST00000486184 SPAG9O60271 1321 aaKnown RBP17.39■□□□□ 0.37
NUP50-216ENST00000486184 TSPY4P0CV99 314 aa17.38■□□□□ 0.37
NUP50-216ENST00000486184 TSPY10P0CW01 314 aa17.38■□□□□ 0.37
NUP50-216ENST00000486184 ADGBQ8N7X0 1667 aa17.38■□□□□ 0.37
NUP50-216ENST00000486184 RRBP1Q9P2E9 1410 aaKnown RBP17.38■□□□□ 0.37
NUP50-216ENST00000486184 MLH3Q9UHC1 1453 aa17.37■□□□□ 0.37
NUP50-216ENST00000486184 DAPK1P53355 1430 aa17.37■□□□□ 0.37
NUP50-216ENST00000486184 MAST1Q9Y2H9 1570 aa17.36■□□□□ 0.37
NUP50-216ENST00000486184 ABCA6Q8N139 1617 aa17.36■□□□□ 0.37
NUP50-216ENST00000486184 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.35■□□□□ 0.37
NUP50-216ENST00000486184 SHANK2Q9UPX8 1470 aa17.35■□□□□ 0.37
NUP50-216ENST00000486184 DIP2CQ9Y2E4 1556 aa17.35■□□□□ 0.37
NUP50-216ENST00000486184 C9orf84Q5VXU9 1444 aa17.34■□□□□ 0.37
NUP50-216ENST00000486184 RTEL1-TNFRSF6BF6WH68 1400 aa17.33■□□□□ 0.36
NUP50-216ENST00000486184 ABCC5O15440 1437 aa17.33■□□□□ 0.36
NUP50-216ENST00000486184 YEATS2Q9ULM3 1422 aa17.33■□□□□ 0.36
NUP50-216ENST00000486184 PLXNC1O60486 1568 aa17.32■□□□□ 0.36
NUP50-216ENST00000486184 ITGAEP38570 1179 aa17.31■□□□□ 0.36
NUP50-216ENST00000486184 ATP10AO60312 1499 aa17.31■□□□□ 0.36
NUP50-216ENST00000486184 REREQ9P2R6 1566 aa17.28■□□□□ 0.36
NUP50-216ENST00000486184 CHIC2Q9UKJ5 165 aa17.27■□□□□ 0.36
NUP50-216ENST00000486184 ANKRD30AQ9BXX3 1397 aa17.27■□□□□ 0.35
NUP50-216ENST00000486184 ARID4BQ4LE39 1312 aaPredicted RBP17.26■□□□□ 0.35
NUP50-216ENST00000486184 A2MP01023 1474 aa17.25■□□□□ 0.35
NUP50-216ENST00000486184 ADGRL2O95490 1459 aa17.24■□□□□ 0.35
NUP50-216ENST00000486184 DUOX2Q9NRD8 1548 aa17.24■□□□□ 0.35
NUP50-216ENST00000486184 SIGLEC1Q9BZZ2 1709 aa17.24■□□□□ 0.35
NUP50-216ENST00000486184 KIF15Q9NS87 1388 aa17.22■□□□□ 0.35
NUP50-216ENST00000486184 EIF2AK4Q9P2K8 1649 aaKnown RBP17.21■□□□□ 0.35
NUP50-216ENST00000486184 RRP7BPQ9NSQ0 103 aa17.21■□□□□ 0.35
NUP50-216ENST00000486184 BCORL1Q5H9F3 1711 aa17.21■□□□□ 0.35
NUP50-216ENST00000486184 AGLP35573 1532 aa17.21■□□□□ 0.34
NUP50-216ENST00000486184 PTPRKQ15262 1439 aa17.21■□□□□ 0.34
NUP50-216ENST00000486184 ROCK1Q13464 1354 aa17.2■□□□□ 0.34
NUP50-216ENST00000486184 NCOA1Q15788 1441 aa17.2■□□□□ 0.34
NUP50-216ENST00000486184 GCC2Q8IWJ2 1684 aa17.2■□□□□ 0.34
NUP50-216ENST00000486184 DHX29Q7Z478 1369 aaKnown RBP17.19■□□□□ 0.34
NUP50-216ENST00000486184 FER1L4A9Z1Z3 1794 aa17.17■□□□□ 0.34
NUP50-216ENST00000486184 ERBINQ96RT1 1412 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms