RNA–Protein interactions for RNA: ENST00000486184.1

NUP50-216, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 821 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-216ENST00000486184 NISCHQ9Y2I1 1504 aa27.08■■□□□ 1.93
NUP50-216ENST00000486184 CCDC180Q9P1Z9 1646 aa24.06■■□□□ 1.44
NUP50-216ENST00000486184 AEBP2Q6ZN18 517 aaPredicted RBP24.01■■□□□ 1.43
NUP50-216ENST00000486184 CHIC1Q5VXU3 224 aa23.52■■□□□ 1.36
NUP50-216ENST00000486184 ABCC9O60706 1549 aa23.2■■□□□ 1.3
NUP50-216ENST00000486184 ZCCHC6Q5VYS8 1495 aaKnown RBP22.61■■□□□ 1.21
NUP50-216ENST00000486184 DCAF8L2P0C7V8 631 aa22.55■■□□□ 1.2
NUP50-216ENST00000486184 NACADO15069 1562 aa22.5■■□□□ 1.19
NUP50-216ENST00000486184 RB1CC1Q8TDY2 1594 aa22.5■■□□□ 1.19
NUP50-216ENST00000486184 DCAF1Q9Y4B6 1507 aa22.41■■□□□ 1.18
NUP50-216ENST00000486184 MYO15BQ96JP2 1530 aa22.41■■□□□ 1.18
NUP50-216ENST00000486184 UNC13AQ9UPW8 1703 aa22.04■■□□□ 1.12
NUP50-216ENST00000486184 SCRIBQ14160 1630 aa21.96■■□□□ 1.11
NUP50-216ENST00000486184 BICRAQ9NZM4 1560 aa21.72■■□□□ 1.07
NUP50-216ENST00000486184 PABPN1Q86U42 306 aaKnown RBP eCLIP21.67■■□□□ 1.06
NUP50-216ENST00000486184 SHROOM4Q9ULL8 1493 aa21.57■■□□□ 1.04
NUP50-216ENST00000486184 EIF4G1Q04637 1599 aaKnown RBP21.17■□□□□ 0.98
NUP50-216ENST00000486184 CC2D2AQ9P2K1 1620 aa21.04■□□□□ 0.96
NUP50-216ENST00000486184 BAZ1AQ9NRL2 1556 aaPredicted RBP21.02■□□□□ 0.96
NUP50-216ENST00000486184 CECR2Q9BXF3 1484 aa21.02■□□□□ 0.96
NUP50-216ENST00000486184 SMARCA4P51532 1647 aa21.01■□□□□ 0.95
NUP50-216ENST00000486184 DNAJC5BQ9UF47 199 aa20.91■□□□□ 0.94
NUP50-216ENST00000486184 MROH2BQ7Z745 1585 aa20.87■□□□□ 0.93
NUP50-216ENST00000486184 SMARCA2P51531 1590 aa20.82■□□□□ 0.92
NUP50-216ENST00000486184 PEG3Q9GZU2 1588 aa20.76■□□□□ 0.91
NUP50-216ENST00000486184 ATAD2BQ9ULI0 1458 aa20.75■□□□□ 0.91
NUP50-216ENST00000486184 WIZO95785 1651 aa20.72■□□□□ 0.91
NUP50-216ENST00000486184 RSF1Q96T23 1441 aaPredicted RBP20.7■□□□□ 0.9
NUP50-216ENST00000486184 NCAPD3P42695 1498 aa20.69■□□□□ 0.9
NUP50-216ENST00000486184 HMGXB3Q12766 1538 aa20.68■□□□□ 0.9
NUP50-216ENST00000486184 BAZ1BQ9UIG0 1483 aaKnown RBP20.67■□□□□ 0.9
NUP50-216ENST00000486184 PHF23Q9BUL5 403 aaPredicted RBP20.61■□□□□ 0.89
NUP50-216ENST00000486184 SENP3Q9H4L4 574 aaPredicted RBP20.51■□□□□ 0.87
NUP50-216ENST00000486184 TOP2AP11388 1531 aaKnown RBP20.5■□□□□ 0.87
NUP50-216ENST00000486184 SUPT5HO00267 1087 aaKnown RBP20.43■□□□□ 0.86
NUP50-216ENST00000486184 CCDC88BA6NC98 1476 aa20.21■□□□□ 0.83
NUP50-216ENST00000486184 LAMC3Q9Y6N6 1575 aa20.19■□□□□ 0.82
NUP50-216ENST00000486184 NESP48681 1621 aa20.13■□□□□ 0.81
NUP50-216ENST00000486184 PRDM2Q13029 1718 aa20.12■□□□□ 0.81
NUP50-216ENST00000486184 CADPSQ9ULU8 1353 aa20.11■□□□□ 0.81
NUP50-216ENST00000486184 CFTRP13569 1480 aa20.05■□□□□ 0.8
NUP50-216ENST00000486184 ERCC6Q03468 1493 aa20.04■□□□□ 0.8
NUP50-216ENST00000486184 KIF21AQ7Z4S6 1674 aa20.02■□□□□ 0.8
NUP50-216ENST00000486184 PDS5BQ9NTI5 1447 aa20.02■□□□□ 0.79
NUP50-216ENST00000486184 FANCD2Q9BXW9 1451 aa19.92■□□□□ 0.78
NUP50-216ENST00000486184 CEP164Q9UPV0 1460 aa19.9■□□□□ 0.78
NUP50-216ENST00000486184 THOC2Q8NI27 1593 aaKnown RBP19.83■□□□□ 0.76
NUP50-216ENST00000486184 MRC2Q9UBG0 1479 aa19.79■□□□□ 0.76
NUP50-216ENST00000486184 WDR62O43379 1518 aa19.72■□□□□ 0.75
NUP50-216ENST00000486184 CUX2O14529 1486 aa19.68■□□□□ 0.74
NUP50-216ENST00000486184 URB2Q14146 1524 aaKnown RBP19.68■□□□□ 0.74
NUP50-216ENST00000486184 ABCC8Q09428 1581 aa19.67■□□□□ 0.74
NUP50-216ENST00000486184 DNMBPQ6XZF7 1577 aa19.67■□□□□ 0.74
NUP50-216ENST00000486184 TOPBP1Q92547 1522 aa19.63■□□□□ 0.73
NUP50-216ENST00000486184 CUX1P39880 1505 aa19.57■□□□□ 0.72
NUP50-216ENST00000486184 WRNQ14191 1432 aaPredicted RBP eCLIP19.56■□□□□ 0.72
NUP50-216ENST00000486184 BIVM-ERCC5R4GMW8 1640 aa19.54■□□□□ 0.72
NUP50-216ENST00000486184 TOP2BQ02880 1626 aa19.52■□□□□ 0.72
NUP50-216ENST00000486184 SYNJ1O43426 1573 aa19.52■□□□□ 0.71
NUP50-216ENST00000486184 FGD5Q6ZNL6 1462 aa19.48■□□□□ 0.71
NUP50-216ENST00000486184 POLA1P09884 1462 aaPredicted RBP19.47■□□□□ 0.71
NUP50-216ENST00000486184 IFT140Q96RY7 1462 aa19.45■□□□□ 0.7
NUP50-216ENST00000486184 TARBP1Q13395 1621 aaKnown RBP19.4■□□□□ 0.7
NUP50-216ENST00000486184 SOGA1O94964 1423 aa19.39■□□□□ 0.69
NUP50-216ENST00000486184 RAD54L2Q9Y4B4 1467 aa19.37■□□□□ 0.69
NUP50-216ENST00000486184 WDR97A6NE52 1622 aa19.36■□□□□ 0.69
NUP50-216ENST00000486184 EIF4G3O43432 1585 aaKnown RBP19.32■□□□□ 0.68
NUP50-216ENST00000486184 ZNF608Q9ULD9 1512 aaPredicted RBP19.3■□□□□ 0.68
NUP50-216ENST00000486184 TRIM41Q8WV44 630 aa19.29■□□□□ 0.68
NUP50-216ENST00000486184 ABCA10Q8WWZ4 1543 aa19.29■□□□□ 0.68
NUP50-216ENST00000486184 PBRM1Q86U86 1689 aa19.25■□□□□ 0.67
NUP50-216ENST00000486184 TDRD9Q8NDG6 1382 aaKnown RBP19.23■□□□□ 0.67
NUP50-216ENST00000486184 ABCA5Q8WWZ7 1642 aa19.23■□□□□ 0.67
NUP50-216ENST00000486184 AQRO60306 1485 aaKnown RBP eCLIP19.22■□□□□ 0.676e-6■□□□□ 8.5
NUP50-216ENST00000486184 GAPVD1Q14C86 1478 aa19.19■□□□□ 0.66
NUP50-216ENST00000486184 PLPPR3Q6T4P5 718 aa19.16■□□□□ 0.66
NUP50-216ENST00000486184 GRIN2BQ13224 1484 aa19.16■□□□□ 0.66
NUP50-216ENST00000486184 KIF27Q86VH2 1401 aa19.14■□□□□ 0.65
NUP50-216ENST00000486184 ERICH3Q5RHP9 1530 aa19.1■□□□□ 0.65
NUP50-216ENST00000486184 SNAPC4Q5SXM2 1469 aa19.09■□□□□ 0.65
NUP50-216ENST00000486184 MAGI1Q96QZ7 1491 aaPredicted RBP19.09■□□□□ 0.65
NUP50-216ENST00000486184 CHD1O14646 1710 aa19.08■□□□□ 0.64
NUP50-216ENST00000486184 CUL7Q14999 1698 aa19.05■□□□□ 0.64
NUP50-216ENST00000486184 ADAMTS12P58397 1594 aa19.04■□□□□ 0.64
NUP50-216ENST00000486184 FBLN2P98095 1184 aa19■□□□□ 0.63
NUP50-216ENST00000486184 SYNJ2O15056 1496 aa19■□□□□ 0.63
NUP50-216ENST00000486184 RUSC2Q8N2Y8 1516 aa18.99■□□□□ 0.63
NUP50-216ENST00000486184 FHAD1B1AJZ9 1412 aa18.98■□□□□ 0.63
NUP50-216ENST00000486184 CHMP7Q8WUX9 453 aaPredicted RBP18.97■□□□□ 0.63
NUP50-216ENST00000486184 EEA1Q15075 1411 aa18.97■□□□□ 0.63
NUP50-216ENST00000486184 FOXD1Q16676 465 aa18.95■□□□□ 0.62
NUP50-216ENST00000486184 IGF1RP08069 1367 aa18.94■□□□□ 0.62
NUP50-216ENST00000486184 GRIN2AQ12879 1464 aa18.91■□□□□ 0.62
NUP50-216ENST00000486184 OSCARQ8IYS5 282 aa18.89■□□□□ 0.61
NUP50-216ENST00000486184 CARMIL1Q5VZK9 1371 aa18.89■□□□□ 0.61
NUP50-216ENST00000486184 FAM9AQ8IZU1 332 aaPredicted RBP18.88■□□□□ 0.61
NUP50-216ENST00000486184 CSRNP3Q8WYN3 585 aa18.85■□□□□ 0.61
NUP50-216ENST00000486184 RAPGEF2Q9Y4G8 1499 aa18.84■□□□□ 0.61
NUP50-216ENST00000486184 CEP170Q5SW79 1584 aa18.81■□□□□ 0.6
NUP50-216ENST00000486184 PRXQ9BXM0 1461 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms