RNA–Protein interactions for RNA: ENST00000471968.1

HDAC3-206, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-206ENST00000471968 EFCAB5A4FU69 1503 aa12.24□□□□□ -0.45
HDAC3-206ENST00000471968 FHOD3Q2V2M9 1422 aa12.24□□□□□ -0.45
HDAC3-206ENST00000471968 RICTORQ6R327 1708 aa12.24□□□□□ -0.45
HDAC3-206ENST00000471968 CAMSAP1Q5T5Y3 1602 aa12.23□□□□□ -0.45
HDAC3-206ENST00000471968 UPF1Q92900 1129 aaKnown RBP eCLIP12.23□□□□□ -0.45
HDAC3-206ENST00000471968 UGGT2Q9NYU1 1516 aa12.21□□□□□ -0.45
HDAC3-206ENST00000471968 CARMIL1Q5VZK9 1371 aa12.2□□□□□ -0.46
HDAC3-206ENST00000471968 ABCA8O94911 1581 aa12.2□□□□□ -0.46
HDAC3-206ENST00000471968 ZMYM4Q5VZL5 1548 aa12.2□□□□□ -0.46
HDAC3-206ENST00000471968 TRAPPC8Q9Y2L5 1435 aa12.18□□□□□ -0.46
HDAC3-206ENST00000471968 MAGI2Q86UL8 1455 aa12.17□□□□□ -0.46
HDAC3-206ENST00000471968 PPP6R1Q9UPN7 881 aa12.16□□□□□ -0.46
HDAC3-206ENST00000471968 KIF27Q86VH2 1401 aa12.16□□□□□ -0.46
HDAC3-206ENST00000471968 PTPRKQ15262 1439 aa12.15□□□□□ -0.46
HDAC3-206ENST00000471968 ATP10AO60312 1499 aa12.14□□□□□ -0.47
HDAC3-206ENST00000471968 C9orf84Q5VXU9 1444 aa12.14□□□□□ -0.47
HDAC3-206ENST00000471968 C3P01024 1663 aa12.14□□□□□ -0.47
HDAC3-206ENST00000471968 PKD2Q13563 968 aa12.14□□□□□ -0.47
HDAC3-206ENST00000471968 HECW1Q76N89 1606 aa12.14□□□□□ -0.47
HDAC3-206ENST00000471968 ALKQ9UM73 1620 aa12.14□□□□□ -0.47
HDAC3-206ENST00000471968 ATP10BO94823 1461 aa12.13□□□□□ -0.47
HDAC3-206ENST00000471968 CPS1P31327 1500 aa12.12□□□□□ -0.47
HDAC3-206ENST00000471968 ESF1Q9H501 851 aaKnown RBP12.1□□□□□ -0.47
HDAC3-206ENST00000471968 IFFO2Q5TF58 517 aa12.08□□□□□ -0.48
HDAC3-206ENST00000471968 PLA2R1Q13018 1463 aa12.08□□□□□ -0.48
HDAC3-206ENST00000471968 TCOF1Q13428 1488 aaKnown RBP12.08□□□□□ -0.48
HDAC3-206ENST00000471968 SHANK2Q9UPX8 1470 aa12.07□□□□□ -0.48
HDAC3-206ENST00000471968 CFAP74Q9C0B2 1584 aa12.06□□□□□ -0.48
HDAC3-206ENST00000471968 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.06□□□□□ -0.48
HDAC3-206ENST00000471968 HNRNPUL2Q1KMD3 747 aaKnown RBP12.06□□□□□ -0.48
HDAC3-206ENST00000471968 RAPGEF2Q9Y4G8 1499 aa12.06□□□□□ -0.48
HDAC3-206ENST00000471968 TRIM52Q96A61 297 aa12.05□□□□□ -0.48
HDAC3-206ENST00000471968 SCAPERQ9BY12 1400 aa12.03□□□□□ -0.48
HDAC3-206ENST00000471968 GOLGA3Q08378 1498 aa12.02□□□□□ -0.48
HDAC3-206ENST00000471968 NPATQ14207 1427 aa12.01□□□□□ -0.49
HDAC3-206ENST00000471968 FAM9AQ8IZU1 332 aaPredicted RBP11.98□□□□□ -0.49
HDAC3-206ENST00000471968 MYT1LQ9UL68 1186 aa11.98□□□□□ -0.49
HDAC3-206ENST00000471968 SUPT6HQ7KZ85 1726 aaKnown RBP11.97□□□□□ -0.49
HDAC3-206ENST00000471968 CNTLNQ9NXG0 1405 aa11.97□□□□□ -0.49
HDAC3-206ENST00000471968 RBM33Q96EV2 1170 aaKnown RBP11.97□□□□□ -0.49
HDAC3-206ENST00000471968 CEP170BQ9Y4F5 1589 aaPredicted RBP11.96□□□□□ -0.49
HDAC3-206ENST00000471968 ZNF142P52746 1687 aaPredicted RBP11.95□□□□□ -0.5
HDAC3-206ENST00000471968 ZRANB1Q9UGI0 708 aa11.95□□□□□ -0.5
HDAC3-206ENST00000471968 MYO3AQ8NEV4 1616 aa11.95□□□□□ -0.5
HDAC3-206ENST00000471968 LRRC7Q96NW7 1537 aa11.95□□□□□ -0.5
HDAC3-206ENST00000471968 SETBP1Q9Y6X0 1596 aa11.94□□□□□ -0.5
HDAC3-206ENST00000471968 AGLP35573 1532 aa11.94□□□□□ -0.5
HDAC3-206ENST00000471968 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.94□□□□□ -0.5
HDAC3-206ENST00000471968 RNF17Q9BXT8 1623 aaKnown RBP11.93□□□□□ -0.5
HDAC3-206ENST00000471968 VWDEQ8N2E2 1590 aa11.93□□□□□ -0.5
HDAC3-206ENST00000471968 ZMYM3Q14202 1370 aa11.92□□□□□ -0.5
HDAC3-206ENST00000471968 P3H3Q8IVL6 736 aa11.92□□□□□ -0.5
HDAC3-206ENST00000471968 DIP2CQ9Y2E4 1556 aa11.91□□□□□ -0.5
HDAC3-206ENST00000471968 PLEKHD1A6NEE1 506 aa11.9□□□□□ -0.5
HDAC3-206ENST00000471968 NEURL4Q96JN8 1562 aa11.9□□□□□ -0.5
HDAC3-206ENST00000471968 REREQ9P2R6 1566 aa11.89□□□□□ -0.51
HDAC3-206ENST00000471968 FOXD1Q16676 465 aa11.89□□□□□ -0.51
HDAC3-206ENST00000471968 ZNF772Q68DY9 489 aaPredicted RBP11.89□□□□□ -0.51
HDAC3-206ENST00000471968 AFAP1Q8N556 730 aa11.89□□□□□ -0.51
HDAC3-206ENST00000471968 RXRBP28702 533 aa11.88□□□□□ -0.51
HDAC3-206ENST00000471968 ZNF518AQ6AHZ1 1483 aa11.88□□□□□ -0.51
HDAC3-206ENST00000471968 MROH2AA6NES4 1674 aa11.86□□□□□ -0.51
HDAC3-206ENST00000471968 POLR1AO95602 1720 aaPredicted RBP11.86□□□□□ -0.51
HDAC3-206ENST00000471968 CTTNBP2Q8WZ74 1663 aa11.85□□□□□ -0.51
HDAC3-206ENST00000471968 ABCA6Q8N139 1617 aa11.85□□□□□ -0.51
HDAC3-206ENST00000471968 RAPGEF6Q8TEU7 1601 aa11.85□□□□□ -0.51
HDAC3-206ENST00000471968 PLCH2O75038 1416 aa11.85□□□□□ -0.51
HDAC3-206ENST00000471968 FAM135BQ49AJ0 1406 aa11.85□□□□□ -0.51
HDAC3-206ENST00000471968 DNMT1P26358 1616 aaKnown RBP11.84□□□□□ -0.51
HDAC3-206ENST00000471968 A2ML1A8K2U0 1454 aa11.83□□□□□ -0.52
HDAC3-206ENST00000471968 NUP153P49790 1475 aaKnown RBP11.83□□□□□ -0.52
HDAC3-206ENST00000471968 MEX3CQ5U5Q3 659 aaKnown RBP11.83□□□□□ -0.52
HDAC3-206ENST00000471968 KDM5CP41229 1560 aa11.83□□□□□ -0.52
HDAC3-206ENST00000471968 EFCAB2Q5VUJ9 269 aa11.82□□□□□ -0.52
HDAC3-206ENST00000471968 ANKLE2Q86XL3 938 aa11.82□□□□□ -0.52
HDAC3-206ENST00000471968 SYNMO15061 1565 aa11.82□□□□□ -0.52
HDAC3-206ENST00000471968 CDK12Q9NYV4 1490 aaPredicted RBP11.82□□□□□ -0.52
HDAC3-206ENST00000471968 STRCP1A6NGW2 1772 aa11.82□□□□□ -0.52
HDAC3-206ENST00000471968 NPHP4O75161 1426 aaPredicted RBP11.81□□□□□ -0.52
HDAC3-206ENST00000471968 NUTM2BA6NNL0 878 aaPredicted RBP11.8□□□□□ -0.52
HDAC3-206ENST00000471968 NUTM2EB1AL46 878 aaPredicted RBP11.8□□□□□ -0.52
HDAC3-206ENST00000471968 NUTM2DQ5VT03 806 aaPredicted RBP11.8□□□□□ -0.52
HDAC3-206ENST00000471968 NUTM2AQ8IVF1 878 aaPredicted RBP11.8□□□□□ -0.52
HDAC3-206ENST00000471968 JCADQ9P266 1359 aa11.79□□□□□ -0.52
HDAC3-206ENST00000471968 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.79□□□□□ -0.52
HDAC3-206ENST00000471968 LRP6O75581 1613 aa11.78□□□□□ -0.52
HDAC3-206ENST00000471968 MLH3Q9UHC1 1453 aa11.77□□□□□ -0.52
HDAC3-206ENST00000471968 CDK13Q14004 1512 aaKnown RBP11.77□□□□□ -0.52
HDAC3-206ENST00000471968 YY1P25490 414 aa11.77□□□□□ -0.53
HDAC3-206ENST00000471968 CLTCQ00610 1675 aaKnown RBP11.77□□□□□ -0.53
HDAC3-206ENST00000471968 RGS12O14924 1447 aa11.76□□□□□ -0.53
HDAC3-206ENST00000471968 ROBO1Q9Y6N7 1651 aa11.75□□□□□ -0.53
HDAC3-206ENST00000471968 MED14O60244 1454 aa11.75□□□□□ -0.53
HDAC3-206ENST00000471968 ABCC1P33527 1531 aa11.73□□□□□ -0.53
HDAC3-206ENST00000471968 IQGAP1P46940 1657 aa11.72□□□□□ -0.53
HDAC3-206ENST00000471968 ATAD2Q6PL18 1390 aa11.71□□□□□ -0.53
HDAC3-206ENST00000471968 SPATA31A6Q5VVP1 1343 aa11.71□□□□□ -0.53
HDAC3-206ENST00000471968 SENP3-EIF4A1A0A087X0R7 540 aa11.71□□□□□ -0.53
HDAC3-206ENST00000471968 THEMISQ8N1K5 641 aaPredicted RBP11.71□□□□□ -0.53
HDAC3-206ENST00000471968 EP400Q96L91 3159 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms