RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 SPRYD3Q8NCJ5 442 aa14.18□□□□□ -0.14
CHD3-208ENST00000470531 WDR43Q15061 677 aaKnown RBP eCLIP14.18□□□□□ -0.146e-7■■□□□ 12.2
CHD3-208ENST00000470531 PEG3Q9GZU2 1588 aa14.18□□□□□ -0.14
CHD3-208ENST00000470531 IL27Q8NEV9 243 aa14.17□□□□□ -0.14
CHD3-208ENST00000470531 BIVM-ERCC5R4GMW8 1640 aa14.17□□□□□ -0.14
CHD3-208ENST00000470531 AKNAQ7Z591 1439 aa14.16□□□□□ -0.14
CHD3-208ENST00000470531 KIF7Q2M1P5 1343 aa14.15□□□□□ -0.14
CHD3-208ENST00000470531 FRAT1Q92837 279 aaPredicted RBP14.14□□□□□ -0.15
CHD3-208ENST00000470531 AQRO60306 1485 aaKnown RBP eCLIP14.14□□□□□ -0.157e-9■■■■■ 40.5
CHD3-208ENST00000470531 PTPRKQ15262 1439 aa14.13□□□□□ -0.15
CHD3-208ENST00000470531 CDCA7LQ96GN5 454 aa14.13□□□□□ -0.15
CHD3-208ENST00000470531 NUDCQ9Y266 331 aa14.13□□□□□ -0.15
CHD3-208ENST00000470531 RCAN3Q9UKA8 241 aa14.13□□□□□ -0.15
CHD3-208ENST00000470531 PCF11O94913 1555 aaKnown RBP14.12□□□□□ -0.15
CHD3-208ENST00000470531 HNRNPMP52272 730 aaKnown RBP eCLIP14.12□□□□□ -0.15
CHD3-208ENST00000470531 CCDC146Q8IYE0 955 aa14.12□□□□□ -0.15
CHD3-208ENST00000470531 GLIPR1L2Q4G1C9 344 aa14.12□□□□□ -0.15
CHD3-208ENST00000470531 FMN1Q68DA7 1419 aa14.12□□□□□ -0.15
CHD3-208ENST00000470531 FGD5Q6ZNL6 1462 aa14.12□□□□□ -0.15
CHD3-208ENST00000470531 PLEKHD1A6NEE1 506 aa14.12□□□□□ -0.15
CHD3-208ENST00000470531 CADPSQ9ULU8 1353 aa14.11□□□□□ -0.15
CHD3-208ENST00000470531 IPO9Q96P70 1041 aaKnown RBP14.1□□□□□ -0.15
CHD3-208ENST00000470531 ZBED9Q6R2W3 1325 aa14.09□□□□□ -0.15
CHD3-208ENST00000470531 FGD6Q6ZV73 1430 aa14.08□□□□□ -0.15
CHD3-208ENST00000470531 NUP155O75694 1391 aa14.08□□□□□ -0.16
CHD3-208ENST00000470531 UACAQ9BZF9 1416 aa14.08□□□□□ -0.16
CHD3-208ENST00000470531 ERICH6BQ5W0A0 696 aa14.07□□□□□ -0.16
CHD3-208ENST00000470531 CNTLNQ9NXG0 1405 aa14.06□□□□□ -0.16
CHD3-208ENST00000470531 CCDC7Q96M83 1385 aa14.06□□□□□ -0.16
CHD3-208ENST00000470531 CFTRP13569 1480 aa14.06□□□□□ -0.16
CHD3-208ENST00000470531 SLKQ9H2G2 1235 aaPredicted RBP14.05□□□□□ -0.16
CHD3-208ENST00000470531 A0A0U1RQG5 324 aaPredicted RBP14.05□□□□□ -0.16
CHD3-208ENST00000470531 SAFB2Q14151 953 aaKnown RBP eCLIP14.05□□□□□ -0.16
CHD3-208ENST00000470531 KNSTRNQ9Y448 316 aa14.05□□□□□ -0.16
CHD3-208ENST00000470531 PDE4AP27815 886 aa14.03□□□□□ -0.16
CHD3-208ENST00000470531 PLPPR3Q6T4P5 718 aa14.03□□□□□ -0.16
CHD3-208ENST00000470531 PDS5BQ9NTI5 1447 aa14.03□□□□□ -0.16
CHD3-208ENST00000470531 NAIPQ13075 1403 aa14.03□□□□□ -0.16
CHD3-208ENST00000470531 CRBNQ96SW2 442 aa14.02□□□□□ -0.16
CHD3-208ENST00000470531 NESP48681 1621 aa14.02□□□□□ -0.16
CHD3-208ENST00000470531 ARID4BQ4LE39 1312 aaPredicted RBP14.02□□□□□ -0.16
CHD3-208ENST00000470531 CLUAP1Q96AJ1 413 aa14.02□□□□□ -0.17
CHD3-208ENST00000470531 BCL2L13Q9BXK5 485 aa14.02□□□□□ -0.17
CHD3-208ENST00000470531 USP47Q96K76 1375 aa14.01□□□□□ -0.17
CHD3-208ENST00000470531 HFM1A2PYH4 1435 aa14□□□□□ -0.17
CHD3-208ENST00000470531 RRP7AQ9Y3A4 280 aaKnown RBP14□□□□□ -0.17
CHD3-208ENST00000470531 PPM1GO15355 546 aaPredicted RBP14□□□□□ -0.17
CHD3-208ENST00000470531 NUTM2DQ5VT03 806 aaPredicted RBP14□□□□□ -0.17
CHD3-208ENST00000470531 ROCK2O75116 1388 aaKnown RBP13.99□□□□□ -0.17
CHD3-208ENST00000470531 GZF1Q9H116 711 aaPredicted RBP13.99□□□□□ -0.17
CHD3-208ENST00000470531 PANK3Q9H999 370 aa13.99□□□□□ -0.17
CHD3-208ENST00000470531 NBPF1Q3BBV0 1214 aa13.99□□□□□ -0.17
CHD3-208ENST00000470531 MAP3K1Q13233 1512 aa13.99□□□□□ -0.17
CHD3-208ENST00000470531 FANCD2Q9BXW9 1451 aa13.99□□□□□ -0.17
CHD3-208ENST00000470531 TPRNQ4KMQ1 711 aa13.99□□□□□ -0.17
CHD3-208ENST00000470531 RRP1P56182 461 aaKnown RBP13.98□□□□□ -0.17
CHD3-208ENST00000470531 PTPN23Q9H3S7 1636 aa13.98□□□□□ -0.17
CHD3-208ENST00000470531 NCOA2Q15596 1464 aa13.97□□□□□ -0.17
CHD3-208ENST00000470531 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.96□□□□□ -0.17
CHD3-208ENST00000470531 VSIG10Q8N0Z9 540 aa13.95□□□□□ -0.18
CHD3-208ENST00000470531 HSP90AA1P07900 732 aaKnown RBP13.95□□□□□ -0.18
CHD3-208ENST00000470531 CASKIN1Q8WXD9 1431 aa13.94□□□□□ -0.18
CHD3-208ENST00000470531 KDM5BQ9UGL1 1544 aa13.94□□□□□ -0.18
CHD3-208ENST00000470531 CFAP43Q8NDM7 1665 aa13.94□□□□□ -0.18
CHD3-208ENST00000470531 MYOM3Q5VTT5 1437 aa13.93□□□□□ -0.18
CHD3-208ENST00000470531 BRPF3Q9ULD4 1205 aa13.93□□□□□ -0.18
CHD3-208ENST00000470531 FYCO1Q9BQS8 1478 aa13.93□□□□□ -0.18
CHD3-208ENST00000470531 C20orf194Q5TEA3 1177 aa13.91□□□□□ -0.18
CHD3-208ENST00000470531 NCOA1Q15788 1441 aa13.91□□□□□ -0.18
CHD3-208ENST00000470531 KTN1Q86UP2 1357 aaKnown RBP13.91□□□□□ -0.18
CHD3-208ENST00000470531 NLRP13Q86W25 1043 aa13.91□□□□□ -0.18
CHD3-208ENST00000470531 PNISRQ8TF01 805 aaKnown RBP13.91□□□□□ -0.18
CHD3-208ENST00000470531 UPF2Q9HAU5 1272 aaKnown RBP13.9□□□□□ -0.18
CHD3-208ENST00000470531 TMF1P82094 1093 aa13.9□□□□□ -0.18
CHD3-208ENST00000470531 U2SURPO15042 1029 aaKnown RBP13.89□□□□□ -0.19
CHD3-208ENST00000470531 SMG6Q86US8 1419 aaKnown RBP13.89□□□□□ -0.19
CHD3-208ENST00000470531 TCERG1O14776 1098 aaKnown RBP13.89□□□□□ -0.19
CHD3-208ENST00000470531 APAF1O14727 1248 aa13.88□□□□□ -0.19
CHD3-208ENST00000470531 ADAMTS8Q9UP79 889 aa13.88□□□□□ -0.19
CHD3-208ENST00000470531 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.87□□□□□ -0.19
CHD3-208ENST00000470531 ZBTB7CA1YPR0 619 aa13.87□□□□□ -0.19
CHD3-208ENST00000470531 DDRGK1Q96HY6 314 aa13.87□□□□□ -0.19
CHD3-208ENST00000470531 KDM6BO15054 1643 aa13.87□□□□□ -0.19
CHD3-208ENST00000470531 MYBBP1AQ9BQG0 1328 aaKnown RBP13.87□□□□□ -0.19
CHD3-208ENST00000470531 COG6Q9Y2V7 657 aa13.87□□□□□ -0.19
CHD3-208ENST00000470531 NCAPD3P42695 1498 aa13.87□□□□□ -0.19
CHD3-208ENST00000470531 FOXD4L1Q9NU39 408 aa13.86□□□□□ -0.19
CHD3-208ENST00000470531 DENND4BO75064 1496 aaPredicted RBP13.86□□□□□ -0.19
CHD3-208ENST00000470531 RALBP1Q15311 655 aa13.85□□□□□ -0.19
CHD3-208ENST00000470531 STK26Q9P289 416 aa13.85□□□□□ -0.19
CHD3-208ENST00000470531 JPH4Q96JJ6 628 aa13.84□□□□□ -0.19
CHD3-208ENST00000470531 CDK13Q14004 1512 aaKnown RBP13.83□□□□□ -0.2
CHD3-208ENST00000470531 APBB1O00213 710 aa13.82□□□□□ -0.2
CHD3-208ENST00000470531 FTSJ3Q8IY81 847 aaKnown RBP13.82□□□□□ -0.2
CHD3-208ENST00000470531 SOX12O15370 315 aa13.82□□□□□ -0.2
CHD3-208ENST00000470531 GOLGA2Q08379 1002 aa13.82□□□□□ -0.2
CHD3-208ENST00000470531 GAPVD1Q14C86 1478 aa13.82□□□□□ -0.2
CHD3-208ENST00000470531 BCAR3O75815 825 aa13.81□□□□□ -0.2
CHD3-208ENST00000470531 PANK1Q8TE04 598 aa13.81□□□□□ -0.2
CHD3-208ENST00000470531 ANKRD30AQ9BXX3 1397 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms