RNA–Protein interactions for RNA: ENST00000456385.5

CLIP4-208, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 2

Gene CLIP4, Length 2,311 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-208ENST00000456385 LRRIQ1Q96JM4 1722 aa13.87□□□□□ -0.19
CLIP4-208ENST00000456385 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.87□□□□□ -0.19
CLIP4-208ENST00000456385 HECW1Q76N89 1606 aa13.86□□□□□ -0.19
CLIP4-208ENST00000456385 CADPSQ9ULU8 1353 aa13.86□□□□□ -0.19
CLIP4-208ENST00000456385 DHX29Q7Z478 1369 aaKnown RBP13.86□□□□□ -0.19
CLIP4-208ENST00000456385 PRDM2Q13029 1718 aa13.84□□□□□ -0.19
CLIP4-208ENST00000456385 EXOC6Q8TAG9 804 aa13.83□□□□□ -0.2
CLIP4-208ENST00000456385 SUPT6HQ7KZ85 1726 aaKnown RBP13.83□□□□□ -0.2
CLIP4-208ENST00000456385 PDE4AP27815 886 aa13.82□□□□□ -0.2
CLIP4-208ENST00000456385 PNISRQ8TF01 805 aaKnown RBP13.82□□□□□ -0.2
CLIP4-208ENST00000456385 GRIN2BQ13224 1484 aa13.82□□□□□ -0.2
CLIP4-208ENST00000456385 ANKRD30BQ9BXX2 1392 aa13.82□□□□□ -0.2
CLIP4-208ENST00000456385 MAGI3Q5TCQ9 1506 aa13.82□□□□□ -0.2
CLIP4-208ENST00000456385 UGGT2Q9NYU1 1516 aa13.82□□□□□ -0.2
CLIP4-208ENST00000456385 TEX14Q8IWB6 1497 aa13.81□□□□□ -0.2
CLIP4-208ENST00000456385 GCC2Q8IWJ2 1684 aa13.81□□□□□ -0.2
CLIP4-208ENST00000456385 CTTNBP2Q8WZ74 1663 aa13.81□□□□□ -0.2
CLIP4-208ENST00000456385 RPRD2Q5VT52 1461 aaKnown RBP13.81□□□□□ -0.2
CLIP4-208ENST00000456385 ABCA5Q8WWZ7 1642 aa13.8□□□□□ -0.2
CLIP4-208ENST00000456385 EHBP1L1Q8N3D4 1523 aa13.8□□□□□ -0.2
CLIP4-208ENST00000456385 TMC1Q8TDI8 760 aa13.79□□□□□ -0.2
CLIP4-208ENST00000456385 ARHGEF11O15085 1522 aa13.79□□□□□ -0.2
CLIP4-208ENST00000456385 TCERG1O14776 1098 aaKnown RBP13.79□□□□□ -0.2
CLIP4-208ENST00000456385 RRP1P56182 461 aaKnown RBP13.79□□□□□ -0.2
CLIP4-208ENST00000456385 BACH2Q9BYV9 841 aa13.79□□□□□ -0.2
CLIP4-208ENST00000456385 USP35Q9P2H5 1018 aa13.79□□□□□ -0.2
CLIP4-208ENST00000456385 WASHC2CQ9Y4E1 1318 aa13.78□□□□□ -0.2
CLIP4-208ENST00000456385 ABCA10Q8WWZ4 1543 aa13.78□□□□□ -0.2
CLIP4-208ENST00000456385 ZNF326Q5BKZ1 582 aaKnown RBP13.78□□□□□ -0.2
CLIP4-208ENST00000456385 TCOF1Q13428 1488 aaKnown RBP13.78□□□□□ -0.2
CLIP4-208ENST00000456385 SKAP1Q86WV1 359 aa13.77□□□□□ -0.21
CLIP4-208ENST00000456385 BRPF3Q9ULD4 1205 aa13.77□□□□□ -0.21
CLIP4-208ENST00000456385 ARID3CA6NKF2 412 aa13.76□□□□□ -0.21
CLIP4-208ENST00000456385 SLC4A1APQ9BWU0 796 aaKnown RBP13.76□□□□□ -0.21
CLIP4-208ENST00000456385 POLA1P09884 1462 aaPredicted RBP13.76□□□□□ -0.21
CLIP4-208ENST00000456385 POLR1AO95602 1720 aaPredicted RBP13.76□□□□□ -0.21
CLIP4-208ENST00000456385 SAMD9Q5K651 1589 aa13.75□□□□□ -0.21
CLIP4-208ENST00000456385 CC2D2AQ9P2K1 1620 aa13.74□□□□□ -0.21
CLIP4-208ENST00000456385 FANCD2Q9BXW9 1451 aa13.74□□□□□ -0.21
CLIP4-208ENST00000456385 BCORL1Q5H9F3 1711 aa13.74□□□□□ -0.21
CLIP4-208ENST00000456385 USP47Q96K76 1375 aa13.74□□□□□ -0.21
CLIP4-208ENST00000456385 CUL7Q14999 1698 aa13.74□□□□□ -0.21
CLIP4-208ENST00000456385 RCAN3Q9UKA8 241 aa13.74□□□□□ -0.21
CLIP4-208ENST00000456385 MIA2Q96PC5 1412 aa13.73□□□□□ -0.21
CLIP4-208ENST00000456385 PPM1GO15355 546 aaPredicted RBP13.73□□□□□ -0.21
CLIP4-208ENST00000456385 THOC2Q8NI27 1593 aaKnown RBP13.71□□□□□ -0.21
CLIP4-208ENST00000456385 MS4A1P11836 297 aa13.71□□□□□ -0.21
CLIP4-208ENST00000456385 LRPPRCP42704 1394 aaKnown RBP13.7□□□□□ -0.22
CLIP4-208ENST00000456385 SLC4A3P48751 1232 aa13.7□□□□□ -0.22
CLIP4-208ENST00000456385 PLIN1O60240 522 aa13.7□□□□□ -0.22
CLIP4-208ENST00000456385 GSE1Q14687 1217 aa13.7□□□□□ -0.22
CLIP4-208ENST00000456385 TOPBP1Q92547 1522 aa13.7□□□□□ -0.22
CLIP4-208ENST00000456385 ZNF644Q9H582 1327 aaPredicted RBP13.69□□□□□ -0.22
CLIP4-208ENST00000456385 DNMBPQ6XZF7 1577 aa13.69□□□□□ -0.22
CLIP4-208ENST00000456385 TDRD9Q8NDG6 1382 aaKnown RBP13.68□□□□□ -0.22
CLIP4-208ENST00000456385 NFKBIBQ15653 356 aa13.68□□□□□ -0.22
CLIP4-208ENST00000456385 CDCA7LQ96GN5 454 aa13.68□□□□□ -0.22
CLIP4-208ENST00000456385 FRAT1Q92837 279 aaPredicted RBP13.67□□□□□ -0.22
CLIP4-208ENST00000456385 CDK13Q14004 1512 aaKnown RBP13.66□□□□□ -0.22
CLIP4-208ENST00000456385 DAPK1P53355 1430 aa13.66□□□□□ -0.22
CLIP4-208ENST00000456385 KIF15Q9NS87 1388 aa13.65□□□□□ -0.22
CLIP4-208ENST00000456385 MBD5Q9P267 1494 aa13.65□□□□□ -0.22
CLIP4-208ENST00000456385 MYBBP1AQ9BQG0 1328 aaKnown RBP13.65□□□□□ -0.22
CLIP4-208ENST00000456385 ABCC5O15440 1437 aa13.65□□□□□ -0.23
CLIP4-208ENST00000456385 EPRSP07814 1512 aaKnown RBP13.64□□□□□ -0.23
CLIP4-208ENST00000456385 ARID4BQ4LE39 1312 aaPredicted RBP13.64□□□□□ -0.23
CLIP4-208ENST00000456385 EIF5BO60841 1220 aaKnown RBP13.64□□□□□ -0.23
CLIP4-208ENST00000456385 BRD4O60885 1362 aaPredicted RBP13.64□□□□□ -0.23
CLIP4-208ENST00000456385 ROCK1Q13464 1354 aa13.64□□□□□ -0.23
CLIP4-208ENST00000456385 KDM5CP41229 1560 aa13.63□□□□□ -0.23
CLIP4-208ENST00000456385 DDRGK1Q96HY6 314 aa13.63□□□□□ -0.23
CLIP4-208ENST00000456385 UBE2Q2Q8WVN8 375 aa13.63□□□□□ -0.23
CLIP4-208ENST00000456385 CRBNQ96SW2 442 aa13.63□□□□□ -0.23
CLIP4-208ENST00000456385 PZPP20742 1482 aa13.62□□□□□ -0.23
CLIP4-208ENST00000456385 CARD11Q9BXL7 1154 aa13.62□□□□□ -0.23
CLIP4-208ENST00000456385 ST20-MTHFSA0A0A6YYL1 179 aa13.62□□□□□ -0.23
CLIP4-208ENST00000456385 ROCK2O75116 1388 aaKnown RBP13.61□□□□□ -0.23
CLIP4-208ENST00000456385 RALBP1Q15311 655 aa13.61□□□□□ -0.23
CLIP4-208ENST00000456385 NESP48681 1621 aa13.6□□□□□ -0.23
CLIP4-208ENST00000456385 PKD2Q13563 968 aa13.6□□□□□ -0.23
CLIP4-208ENST00000456385 C20orf194Q5TEA3 1177 aa13.59□□□□□ -0.23
CLIP4-208ENST00000456385 PDE3BQ13370 1112 aa13.58□□□□□ -0.23
CLIP4-208ENST00000456385 GAPVD1Q14C86 1478 aa13.58□□□□□ -0.24
CLIP4-208ENST00000456385 KDM2AQ9Y2K7 1162 aa13.58□□□□□ -0.24
CLIP4-208ENST00000456385 KIF14Q15058 1648 aa13.58□□□□□ -0.24
CLIP4-208ENST00000456385 DAXXQ9UER7 740 aaPredicted RBP13.57□□□□□ -0.24
CLIP4-208ENST00000456385 FRAT2O75474 233 aaPredicted RBP13.57□□□□□ -0.24
CLIP4-208ENST00000456385 NLRP13Q86W25 1043 aa13.57□□□□□ -0.24
CLIP4-208ENST00000456385 DNMT1P26358 1616 aaKnown RBP13.56□□□□□ -0.24
CLIP4-208ENST00000456385 KIAA1107Q9UPP5 1409 aa13.56□□□□□ -0.24
CLIP4-208ENST00000456385 DCAF11Q8TEB1 546 aa13.55□□□□□ -0.24
CLIP4-208ENST00000456385 LAMC3Q9Y6N6 1575 aa13.54□□□□□ -0.24
CLIP4-208ENST00000456385 KTN1Q86UP2 1357 aaKnown RBP13.54□□□□□ -0.24
CLIP4-208ENST00000456385 KIF21AQ7Z4S6 1674 aa13.54□□□□□ -0.24
CLIP4-208ENST00000456385 KDM2BQ8NHM5 1336 aa13.54□□□□□ -0.24
CLIP4-208ENST00000456385 RALGAPBQ86X10 1494 aa13.53□□□□□ -0.24
CLIP4-208ENST00000456385 URB2Q14146 1524 aaKnown RBP13.53□□□□□ -0.24
CLIP4-208ENST00000456385 C8orf34Q49A92 452 aa13.53□□□□□ -0.24
CLIP4-208ENST00000456385 UHRF1BP1Q6BDS2 1440 aa13.52□□□□□ -0.24
CLIP4-208ENST00000456385 WDR62O43379 1518 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms