RNA–Protein interactions for RNA: ENST00000456385.5

CLIP4-208, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 2

Gene CLIP4, Length 2,311 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-208ENST00000456385 NISCHQ9Y2I1 1504 aa19.76■□□□□ 0.75
CLIP4-208ENST00000456385 SHROOM4Q9ULL8 1493 aa17.52■□□□□ 0.4
CLIP4-208ENST00000456385 HRCP23327 699 aa17.46■□□□□ 0.38
CLIP4-208ENST00000456385 SUPT5HO00267 1087 aaKnown RBP17.42■□□□□ 0.38
CLIP4-208ENST00000456385 MYO15BQ96JP2 1530 aa17.2■□□□□ 0.34
CLIP4-208ENST00000456385 PCGF6Q9BYE7 350 aa17.19■□□□□ 0.34
CLIP4-208ENST00000456385 PPARGC1BQ86YN6 1023 aaKnown RBP17.18■□□□□ 0.34
CLIP4-208ENST00000456385 CHIC1Q5VXU3 224 aa17.09■□□□□ 0.33
CLIP4-208ENST00000456385 ZCCHC6Q5VYS8 1495 aaKnown RBP16.79■□□□□ 0.28
CLIP4-208ENST00000456385 LOC105371045A0A1W2PR82 267 aa16.74■□□□□ 0.27
CLIP4-208ENST00000456385 DCAF1Q9Y4B6 1507 aa16.72■□□□□ 0.27
CLIP4-208ENST00000456385 TRIM26Q12899 539 aaPredicted RBP16.61■□□□□ 0.25
CLIP4-208ENST00000456385 PELP1Q8IZL8 1130 aaKnown RBP16.58■□□□□ 0.25
CLIP4-208ENST00000456385 DCAF8L2P0C7V8 631 aa16.56■□□□□ 0.24
CLIP4-208ENST00000456385 SCAF1Q9H7N4 1312 aaKnown RBP16.5■□□□□ 0.23
CLIP4-208ENST00000456385 CCDC180Q9P1Z9 1646 aa16.48■□□□□ 0.23
CLIP4-208ENST00000456385 ZEB1P37275 1124 aaPredicted RBP16.38■□□□□ 0.21
CLIP4-208ENST00000456385 FAM9AQ8IZU1 332 aaPredicted RBP16.13■□□□□ 0.17
CLIP4-208ENST00000456385 EHMT2Q96KQ7 1210 aa16.1■□□□□ 0.17
CLIP4-208ENST00000456385 NEUROD1Q13562 356 aa16.08■□□□□ 0.17
CLIP4-208ENST00000456385 TRIM41Q8WV44 630 aa16.08■□□□□ 0.17
CLIP4-208ENST00000456385 ACIN1Q9UKV3 1341 aaKnown RBP16.08■□□□□ 0.17
CLIP4-208ENST00000456385 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.97■□□□□ 0.15
CLIP4-208ENST00000456385 GTF3C3Q9Y5Q9 886 aa15.97■□□□□ 0.15
CLIP4-208ENST00000456385 ABCC9O60706 1549 aa15.93■□□□□ 0.14
CLIP4-208ENST00000456385 RSF1Q96T23 1441 aaPredicted RBP15.91■□□□□ 0.14
CLIP4-208ENST00000456385 CCER1Q8TC90 406 aaPredicted RBP15.9■□□□□ 0.14
CLIP4-208ENST00000456385 DIEXFQ68CQ4 756 aaKnown RBP15.88■□□□□ 0.13
CLIP4-208ENST00000456385 MYT1Q01538 1121 aa15.86■□□□□ 0.13
CLIP4-208ENST00000456385 CENPBP07199 599 aaPredicted RBP15.84■□□□□ 0.13
CLIP4-208ENST00000456385 RB1CC1Q8TDY2 1594 aa15.83■□□□□ 0.12
CLIP4-208ENST00000456385 TTBK1Q5TCY1 1321 aaPredicted RBP15.69■□□□□ 0.1
CLIP4-208ENST00000456385 SCRIBQ14160 1630 aa15.69■□□□□ 0.1
CLIP4-208ENST00000456385 YTHDC1Q96MU7 727 aaKnown RBP15.65■□□□□ 0.1
CLIP4-208ENST00000456385 ZNF316A6NFI3 1004 aaPredicted RBP15.57■□□□□ 0.08
CLIP4-208ENST00000456385 CECR2Q9BXF3 1484 aa15.52■□□□□ 0.07
CLIP4-208ENST00000456385 MIER1Q8N108 512 aa15.5■□□□□ 0.07
CLIP4-208ENST00000456385 MROH2BQ7Z745 1585 aa15.47■□□□□ 0.07
CLIP4-208ENST00000456385 WRNQ14191 1432 aaPredicted RBP eCLIP15.45■□□□□ 0.06
CLIP4-208ENST00000456385 WIZO95785 1651 aa15.41■□□□□ 0.06
CLIP4-208ENST00000456385 CEP162Q5TB80 1403 aa15.41■□□□□ 0.06
CLIP4-208ENST00000456385 CCDC88BA6NC98 1476 aa15.34■□□□□ 0.05
CLIP4-208ENST00000456385 EIF4G1Q04637 1599 aaKnown RBP15.33■□□□□ 0.04
CLIP4-208ENST00000456385 ABCC8Q09428 1581 aa15.32■□□□□ 0.04
CLIP4-208ENST00000456385 HNRNPUL2Q1KMD3 747 aaKnown RBP15.31■□□□□ 0.04
CLIP4-208ENST00000456385 SOGA1O94964 1423 aa15.29■□□□□ 0.04
CLIP4-208ENST00000456385 TNIKQ9UKE5 1360 aa15.29■□□□□ 0.04
CLIP4-208ENST00000456385 UBTFP17480 764 aaKnown RBP15.28■□□□□ 0.04
CLIP4-208ENST00000456385 BAZ1AQ9NRL2 1556 aaPredicted RBP15.24■□□□□ 0.03
CLIP4-208ENST00000456385 SUPT16HQ9Y5B9 1047 aaKnown RBP15.22■□□□□ 0.03
CLIP4-208ENST00000456385 RUSC2Q8N2Y8 1516 aa15.21■□□□□ 0.03
CLIP4-208ENST00000456385 CSRNP3Q8WYN3 585 aa15.21■□□□□ 0.02
CLIP4-208ENST00000456385 TSHZ2Q9NRE2 1034 aa15.12■□□□□ 0.01
CLIP4-208ENST00000456385 NACADO15069 1562 aa15.11■□□□□ 0.01
CLIP4-208ENST00000456385 GOLGA3Q08378 1498 aa15.09■□□□□ 0.01
CLIP4-208ENST00000456385 ANP32EQ9BTT0 268 aa15.08■□□□□ 0
CLIP4-208ENST00000456385 EEA1Q15075 1411 aa15.08■□□□□ 0
CLIP4-208ENST00000456385 CLSPNQ9HAW4 1339 aa15.07■□□□□ 0
CLIP4-208ENST00000456385 TOP2AP11388 1531 aaKnown RBP15.06■□□□□ 0
CLIP4-208ENST00000456385 SMARCA2P51531 1590 aa15.04■□□□□ -0
CLIP4-208ENST00000456385 CLIP1P30622 1438 aa15□□□□□ -0.01
CLIP4-208ENST00000456385 RANGAP1P46060 587 aaPredicted RBP15□□□□□ -0.01
CLIP4-208ENST00000456385 BCL11AQ9H165 835 aa15□□□□□ -0.01
CLIP4-208ENST00000456385 APLP2Q06481 763 aa14.99□□□□□ -0.01
CLIP4-208ENST00000456385 VPS8Q8N3P4 1428 aa14.97□□□□□ -0.01
CLIP4-208ENST00000456385 DHX57Q6P158 1386 aaKnown RBP14.96□□□□□ -0.01
CLIP4-208ENST00000456385 KCNH8Q96L42 1107 aa14.96□□□□□ -0.01
CLIP4-208ENST00000456385 BCANQ96GW7 911 aa14.94□□□□□ -0.02
CLIP4-208ENST00000456385 CEP164Q9UPV0 1460 aa14.94□□□□□ -0.02
CLIP4-208ENST00000456385 SMARCA4P51532 1647 aa14.92□□□□□ -0.02
CLIP4-208ENST00000456385 KIF21BO75037 1637 aa14.87□□□□□ -0.03
CLIP4-208ENST00000456385 RAPGEF2Q9Y4G8 1499 aa14.86□□□□□ -0.03
CLIP4-208ENST00000456385 FKBP8Q14318 412 aa14.84□□□□□ -0.03
CLIP4-208ENST00000456385 SYNJ1O43426 1573 aa14.83□□□□□ -0.04
CLIP4-208ENST00000456385 KANK4Q5T7N3 995 aaPredicted RBP14.81□□□□□ -0.04
CLIP4-208ENST00000456385 BAZ1BQ9UIG0 1483 aaKnown RBP14.79□□□□□ -0.04
CLIP4-208ENST00000456385 RBM19Q9Y4C8 960 aaKnown RBP14.78□□□□□ -0.04
CLIP4-208ENST00000456385 ITGAEP38570 1179 aa14.74□□□□□ -0.05
CLIP4-208ENST00000456385 DDX10Q13206 875 aaKnown RBP14.72□□□□□ -0.05
CLIP4-208ENST00000456385 ARAP1Q96P48 1450 aa14.69□□□□□ -0.06
CLIP4-208ENST00000456385 RRBP1Q9P2E9 1410 aaKnown RBP14.69□□□□□ -0.06
CLIP4-208ENST00000456385 TRIM52Q96A61 297 aa14.67□□□□□ -0.06
CLIP4-208ENST00000456385 MSH5O43196 834 aa14.66□□□□□ -0.06
CLIP4-208ENST00000456385 NEFLP07196 543 aa14.66□□□□□ -0.06
CLIP4-208ENST00000456385 CUX2O14529 1486 aa14.65□□□□□ -0.06
CLIP4-208ENST00000456385 CCNB3Q8WWL7 1395 aa14.64□□□□□ -0.07
CLIP4-208ENST00000456385 MAPKBP1O60336 1514 aa14.63□□□□□ -0.07
CLIP4-208ENST00000456385 HIRIP3Q9BW71 556 aaPredicted RBP14.63□□□□□ -0.07
CLIP4-208ENST00000456385 RAB3GAP2Q9H2M9 1393 aa14.62□□□□□ -0.07
CLIP4-208ENST00000456385 PABPN1Q86U42 306 aaKnown RBP eCLIP14.61□□□□□ -0.07
CLIP4-208ENST00000456385 SIN3AQ96ST3 1273 aa14.61□□□□□ -0.07
CLIP4-208ENST00000456385 PPP1R15AO75807 674 aaPredicted RBP14.6□□□□□ -0.07
CLIP4-208ENST00000456385 UNC13AQ9UPW8 1703 aa14.6□□□□□ -0.07
CLIP4-208ENST00000456385 WDR97A6NE52 1622 aa14.59□□□□□ -0.07
CLIP4-208ENST00000456385 PRXQ9BXM0 1461 aa14.56□□□□□ -0.08
CLIP4-208ENST00000456385 ERICH3Q5RHP9 1530 aa14.53□□□□□ -0.08
CLIP4-208ENST00000456385 TOP2BQ02880 1626 aa14.52□□□□□ -0.08
CLIP4-208ENST00000456385 ANP32CO43423 234 aa14.52□□□□□ -0.08
CLIP4-208ENST00000456385 PEG3Q9GZU2 1588 aa14.52□□□□□ -0.08
CLIP4-208ENST00000456385 CCER2I3L3R5 266 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms