RNA–Protein interactions for RNA: ENST00000452162.5

PKP4-206, Transcript of plakophilin 4, humanhuman

TSL 1 (best)

Gene PKP4, Length 2,359 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-206ENST00000452162 FANCAO15360 1455 aa16.12■□□□□ 0.17
PKP4-206ENST00000452162 LRRC9Q6ZRR7 1453 aa16.12■□□□□ 0.17
PKP4-206ENST00000452162 NEO1Q92859 1461 aa16.11■□□□□ 0.17
PKP4-206ENST00000452162 PREX2Q70Z35 1606 aa16.09■□□□□ 0.17
PKP4-206ENST00000452162 ARAP3Q8WWN8 1544 aa16.09■□□□□ 0.17
PKP4-206ENST00000452162 SUPT6HQ7KZ85 1726 aaKnown RBP16.09■□□□□ 0.17
PKP4-206ENST00000452162 ARHGAP5Q13017 1502 aa16.08■□□□□ 0.16
PKP4-206ENST00000452162 AKNAQ7Z591 1439 aa16.08■□□□□ 0.16
PKP4-206ENST00000452162 CFAP74Q9C0B2 1584 aa16.08■□□□□ 0.16
PKP4-206ENST00000452162 GPATCH8Q9UKJ3 1502 aaKnown RBP16.07■□□□□ 0.16
PKP4-206ENST00000452162 PHLDB1Q86UU1 1377 aa16.07■□□□□ 0.16
PKP4-206ENST00000452162 EFCAB2Q5VUJ9 269 aa16.07■□□□□ 0.16
PKP4-206ENST00000452162 NCOA2Q15596 1464 aa16.07■□□□□ 0.16
PKP4-206ENST00000452162 CCNB3Q8WWL7 1395 aa16.06■□□□□ 0.16
PKP4-206ENST00000452162 RAPGEF3O95398 923 aa16.04■□□□□ 0.16
PKP4-206ENST00000452162 ADGRL1O94910 1474 aa16.03■□□□□ 0.16
PKP4-206ENST00000452162 ITSN2Q9NZM3 1697 aa16.01■□□□□ 0.15
PKP4-206ENST00000452162 FRMPD1Q5SYB0 1578 aa16.01■□□□□ 0.15
PKP4-206ENST00000452162 CFDP1Q9UEE9 299 aaPredicted RBP16.01■□□□□ 0.15
PKP4-206ENST00000452162 RICTORQ6R327 1708 aa16.01■□□□□ 0.15
PKP4-206ENST00000452162 SCAPERQ9BY12 1400 aa16.01■□□□□ 0.15
PKP4-206ENST00000452162 ZNF777Q9ULD5 760 aaPredicted RBP16.01■□□□□ 0.15
PKP4-206ENST00000452162 DENND4BO75064 1496 aaPredicted RBP16.01■□□□□ 0.15
PKP4-206ENST00000452162 SAMD9LQ8IVG5 1584 aa16■□□□□ 0.15
PKP4-206ENST00000452162 ABCC1P33527 1531 aa15.98■□□□□ 0.15
PKP4-206ENST00000452162 ARHGEF12Q9NZN5 1544 aa15.98■□□□□ 0.15
PKP4-206ENST00000452162 ZNF644Q9H582 1327 aaPredicted RBP15.97■□□□□ 0.15
PKP4-206ENST00000452162 POGZQ7Z3K3 1410 aa15.96■□□□□ 0.15
PKP4-206ENST00000452162 SYCP2Q9BX26 1530 aa15.95■□□□□ 0.14
PKP4-206ENST00000452162 AFAP1Q8N556 730 aa15.94■□□□□ 0.14
PKP4-206ENST00000452162 TRAPPC8Q9Y2L5 1435 aa15.94■□□□□ 0.14
PKP4-206ENST00000452162 MYOM3Q5VTT5 1437 aa15.94■□□□□ 0.14
PKP4-206ENST00000452162 HNRNPMP52272 730 aaKnown RBP eCLIP15.93■□□□□ 0.143e-6■■■□□ 19.2
PKP4-206ENST00000452162 ZNF518AQ6AHZ1 1483 aa15.92■□□□□ 0.14
PKP4-206ENST00000452162 ZMYM4Q5VZL5 1548 aa15.92■□□□□ 0.14
PKP4-206ENST00000452162 KIAA1107Q9UPP5 1409 aa15.91■□□□□ 0.14
PKP4-206ENST00000452162 CAMSAP2Q08AD1 1489 aa15.91■□□□□ 0.14
PKP4-206ENST00000452162 PLEKHH2Q8IVE3 1493 aa15.91■□□□□ 0.14
PKP4-206ENST00000452162 KDM5CP41229 1560 aa15.91■□□□□ 0.14
PKP4-206ENST00000452162 DHX57Q6P158 1386 aaKnown RBP15.89■□□□□ 0.13
PKP4-206ENST00000452162 MIA2Q96PC5 1412 aa15.88■□□□□ 0.13
PKP4-206ENST00000452162 YEATS2Q9ULM3 1422 aa15.88■□□□□ 0.13
PKP4-206ENST00000452162 MBD5Q9P267 1494 aa15.88■□□□□ 0.13
PKP4-206ENST00000452162 ARHGEF40Q8TER5 1519 aa15.87■□□□□ 0.13
PKP4-206ENST00000452162 HECW2Q9P2P5 1572 aa15.87■□□□□ 0.13
PKP4-206ENST00000452162 ZFYVE16Q7Z3T8 1539 aa15.87■□□□□ 0.13
PKP4-206ENST00000452162 FGD6Q6ZV73 1430 aa15.87■□□□□ 0.13
PKP4-206ENST00000452162 CLSPNQ9HAW4 1339 aa15.86■□□□□ 0.13
PKP4-206ENST00000452162 PTPN23Q9H3S7 1636 aa15.86■□□□□ 0.13
PKP4-206ENST00000452162 MAGI2Q86UL8 1455 aa15.86■□□□□ 0.13
PKP4-206ENST00000452162 MYT1LQ9UL68 1186 aa15.85■□□□□ 0.13
PKP4-206ENST00000452162 KIDINS220Q9ULH0 1771 aa15.85■□□□□ 0.13
PKP4-206ENST00000452162 MLH3Q9UHC1 1453 aa15.84■□□□□ 0.13
PKP4-206ENST00000452162 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.84■□□□□ 0.133e-7■■■■□ 24.5
PKP4-206ENST00000452162 SPAG9O60271 1321 aaKnown RBP15.83■□□□□ 0.12
PKP4-206ENST00000452162 ARHGEF5Q12774 1597 aa15.82■□□□□ 0.12
PKP4-206ENST00000452162 ABCA6Q8N139 1617 aa15.82■□□□□ 0.12
PKP4-206ENST00000452162 SIGLEC1Q9BZZ2 1709 aa15.82■□□□□ 0.12
PKP4-206ENST00000452162 CCDC141Q6ZP82 1450 aa15.82■□□□□ 0.12
PKP4-206ENST00000452162 DIP2CQ9Y2E4 1556 aa15.81■□□□□ 0.12
PKP4-206ENST00000452162 INO80Q9ULG1 1556 aaPredicted RBP15.81■□□□□ 0.12
PKP4-206ENST00000452162 TCOF1Q13428 1488 aaKnown RBP15.81■□□□□ 0.12
PKP4-206ENST00000452162 ITGAEP38570 1179 aa15.81■□□□□ 0.12
PKP4-206ENST00000452162 ATP7AQ04656 1500 aa15.8■□□□□ 0.12
PKP4-206ENST00000452162 ATP10AO60312 1499 aa15.8■□□□□ 0.12
PKP4-206ENST00000452162 RSPH4AQ5TD94 716 aa15.79■□□□□ 0.12
PKP4-206ENST00000452162 RAB3GAP2Q9H2M9 1393 aa15.79■□□□□ 0.12
PKP4-206ENST00000452162 FAM50AQ14320 339 aaKnown RBP15.78■□□□□ 0.12
PKP4-206ENST00000452162 C9orf84Q5VXU9 1444 aa15.77■□□□□ 0.12
PKP4-206ENST00000452162 SETD5Q9C0A6 1442 aa15.77■□□□□ 0.12
PKP4-206ENST00000452162 ARID4BQ4LE39 1312 aaPredicted RBP15.77■□□□□ 0.11
PKP4-206ENST00000452162 TSPY4P0CV99 314 aa15.76■□□□□ 0.11
PKP4-206ENST00000452162 TSPY10P0CW01 314 aa15.76■□□□□ 0.11
PKP4-206ENST00000452162 DNMT1P26358 1616 aaKnown RBP15.76■□□□□ 0.11
PKP4-206ENST00000452162 KDM4FA0A1W2PPD8 638 aa15.76■□□□□ 0.11
PKP4-206ENST00000452162 RTEL1-TNFRSF6BF6WH68 1400 aa15.75■□□□□ 0.11
PKP4-206ENST00000452162 ABCC5O15440 1437 aa15.75■□□□□ 0.11
PKP4-206ENST00000452162 CROCC2H7BZ55 1655 aa15.75■□□□□ 0.11
PKP4-206ENST00000452162 DAPK1P53355 1430 aa15.75■□□□□ 0.11
PKP4-206ENST00000452162 ADGBQ8N7X0 1667 aa15.74■□□□□ 0.11
PKP4-206ENST00000452162 REREQ9P2R6 1566 aa15.74■□□□□ 0.11
PKP4-206ENST00000452162 MAST1Q9Y2H9 1570 aa15.73■□□□□ 0.11
PKP4-206ENST00000452162 ZNF316A6NFI3 1004 aaPredicted RBP15.73■□□□□ 0.11
PKP4-206ENST00000452162 BCORL1Q5H9F3 1711 aa15.73■□□□□ 0.11
PKP4-206ENST00000452162 MLECQ14165 292 aa15.71■□□□□ 0.11
PKP4-206ENST00000452162 A2MP01023 1474 aa15.71■□□□□ 0.11
PKP4-206ENST00000452162 SHANK2Q9UPX8 1470 aa15.7■□□□□ 0.1
PKP4-206ENST00000452162 PLXNC1O60486 1568 aa15.7■□□□□ 0.1
PKP4-206ENST00000452162 CHIC2Q9UKJ5 165 aa15.7■□□□□ 0.1
PKP4-206ENST00000452162 ADAMTSL3P82987 1691 aa15.7■□□□□ 0.1
PKP4-206ENST00000452162 DIEXFQ68CQ4 756 aaKnown RBP15.69■□□□□ 0.1
PKP4-206ENST00000452162 AGLP35573 1532 aa15.68■□□□□ 0.1
PKP4-206ENST00000452162 PTPRKQ15262 1439 aa15.68■□□□□ 0.1
PKP4-206ENST00000452162 DHX29Q7Z478 1369 aaKnown RBP15.67■□□□□ 0.1
PKP4-206ENST00000452162 MADDQ8WXG6 1647 aa15.67■□□□□ 0.1
PKP4-206ENST00000452162 RRP7BPQ9NSQ0 103 aa15.65■□□□□ 0.1
PKP4-206ENST00000452162 FER1L4A9Z1Z3 1794 aa15.64■□□□□ 0.09
PKP4-206ENST00000452162 KIF15Q9NS87 1388 aa15.64■□□□□ 0.09
PKP4-206ENST00000452162 HFM1A2PYH4 1435 aa15.63■□□□□ 0.09
PKP4-206ENST00000452162 NCOA1Q15788 1441 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms