RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 CLCN6P51797 869 aa7.41□□□□□ -1.22
SF3B1-202ENST00000409915 NUBP1P53384 320 aa7.41□□□□□ -1.22
SF3B1-202ENST00000409915 WDR97A6NE52 1622 aa7.41□□□□□ -1.22
SF3B1-202ENST00000409915 TRIM26Q12899 539 aaPredicted RBP7.4□□□□□ -1.22
SF3B1-202ENST00000409915 CCDC61Q9Y6R9 512 aa7.4□□□□□ -1.22
SF3B1-202ENST00000409915 ABCA10Q8WWZ4 1543 aa7.39□□□□□ -1.23
SF3B1-202ENST00000409915 SNAPC4Q5SXM2 1469 aa7.37□□□□□ -1.23
SF3B1-202ENST00000409915 UBTFP17480 764 aaKnown RBP7.37□□□□□ -1.23
SF3B1-202ENST00000409915 LHX8Q68G74 356 aa7.37□□□□□ -1.23
SF3B1-202ENST00000409915 MS4A3Q96HJ5 214 aa7.37□□□□□ -1.23
SF3B1-202ENST00000409915 ABCA5Q8WWZ7 1642 aa7.37□□□□□ -1.23
SF3B1-202ENST00000409915 GAPVD1Q14C86 1478 aa7.36□□□□□ -1.23
SF3B1-202ENST00000409915 PBRM1Q86U86 1689 aa7.35□□□□□ -1.23
SF3B1-202ENST00000409915 ZBTB47Q9UFB7 747 aaPredicted RBP7.35□□□□□ -1.23
SF3B1-202ENST00000409915 TRPC6Q9Y210 931 aa7.35□□□□□ -1.23
SF3B1-202ENST00000409915 GRIN2BQ13224 1484 aa7.35□□□□□ -1.23
SF3B1-202ENST00000409915 CHD1O14646 1710 aa7.33□□□□□ -1.24
SF3B1-202ENST00000409915 MAGI1Q96QZ7 1491 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-202ENST00000409915 MAP3K13O43283 966 aa7.32□□□□□ -1.24
SF3B1-202ENST00000409915 KIF12Q96FN5 646 aa7.32□□□□□ -1.24
SF3B1-202ENST00000409915 RGL2O15211 777 aa7.31□□□□□ -1.24
SF3B1-202ENST00000409915 ADAMTS12P58397 1594 aa7.31□□□□□ -1.24
SF3B1-202ENST00000409915 SYNJ2O15056 1496 aa7.3□□□□□ -1.24
SF3B1-202ENST00000409915 TRIM41Q8WV44 630 aa7.3□□□□□ -1.24
SF3B1-202ENST00000409915 CHMP7Q8WUX9 453 aaPredicted RBP7.29□□□□□ -1.24
SF3B1-202ENST00000409915 KIF27Q86VH2 1401 aa7.28□□□□□ -1.24
SF3B1-202ENST00000409915 ERICH3Q5RHP9 1530 aa7.28□□□□□ -1.24
SF3B1-202ENST00000409915 RUSC2Q8N2Y8 1516 aa7.28□□□□□ -1.24
SF3B1-202ENST00000409915 HRCP23327 699 aa7.28□□□□□ -1.24
SF3B1-202ENST00000409915 SPOCK2Q92563 424 aa7.27□□□□□ -1.25
SF3B1-202ENST00000409915 GRIN2AQ12879 1464 aa7.27□□□□□ -1.25
SF3B1-202ENST00000409915 FHAD1B1AJZ9 1412 aa7.27□□□□□ -1.25
SF3B1-202ENST00000409915 IGF1RP08069 1367 aa7.26□□□□□ -1.25
SF3B1-202ENST00000409915 CHGAP10645 457 aaKnown RBP7.26□□□□□ -1.25
SF3B1-202ENST00000409915 PYGBP11216 843 aa7.26□□□□□ -1.25
SF3B1-202ENST00000409915 FAM212AQ96EL1 285 aa7.26□□□□□ -1.25
SF3B1-202ENST00000409915 CLASP1Q7Z460 1538 aa7.26□□□□□ -1.25
SF3B1-202ENST00000409915 CEP170Q5SW79 1584 aa7.25□□□□□ -1.25
SF3B1-202ENST00000409915 DCAF8Q5TAQ9 597 aa7.25□□□□□ -1.25
SF3B1-202ENST00000409915 IFNL1Q8IU54 200 aa7.24□□□□□ -1.25
SF3B1-202ENST00000409915 CUL7Q14999 1698 aa7.23□□□□□ -1.25
SF3B1-202ENST00000409915 ATMINO43313 823 aaPredicted RBP7.23□□□□□ -1.25
SF3B1-202ENST00000409915 ATN1P54259 1190 aaPredicted RBP7.23□□□□□ -1.25
SF3B1-202ENST00000409915 BRPF1P55201 1214 aaPredicted RBP7.23□□□□□ -1.25
SF3B1-202ENST00000409915 BMP2KQ9NSY1 1161 aaPredicted RBP7.23□□□□□ -1.25
SF3B1-202ENST00000409915 PCDHB13Q9Y5F0 798 aa7.23□□□□□ -1.25
SF3B1-202ENST00000409915 NUP160Q12769 1436 aa7.23□□□□□ -1.25
SF3B1-202ENST00000409915 RIMBP3CA6NJZ7 1639 aa7.23□□□□□ -1.25
SF3B1-202ENST00000409915 RIMBP3BA6NNM3 1639 aa7.23□□□□□ -1.25
SF3B1-202ENST00000409915 RIMBP3Q9UFD9 1639 aa7.23□□□□□ -1.25
SF3B1-202ENST00000409915 ARHGEF11O15085 1522 aa7.22□□□□□ -1.25
SF3B1-202ENST00000409915 CARMIL1Q5VZK9 1371 aa7.22□□□□□ -1.25
SF3B1-202ENST00000409915 POTEB2H3BUK9 544 aa7.21□□□□□ -1.26
SF3B1-202ENST00000409915 ASTLQ6HA08 431 aaPredicted RBP7.21□□□□□ -1.26
SF3B1-202ENST00000409915 FAM9AQ8IZU1 332 aaPredicted RBP7.21□□□□□ -1.26
SF3B1-202ENST00000409915 PCDHB8Q9UN66 801 aa7.21□□□□□ -1.26
SF3B1-202ENST00000409915 ERCC6L2Q5T890 1561 aa7.2□□□□□ -1.26
SF3B1-202ENST00000409915 ARAP1Q96P48 1450 aa7.18□□□□□ -1.26
SF3B1-202ENST00000409915 RAPGEF2Q9Y4G8 1499 aa7.18□□□□□ -1.26
SF3B1-202ENST00000409915 TTLL13PA6NNM8 815 aa7.18□□□□□ -1.26
SF3B1-202ENST00000409915 METRNQ9UJH8 293 aa7.17□□□□□ -1.26
SF3B1-202ENST00000409915 CIZ1Q9ULV3 898 aaPredicted RBP7.17□□□□□ -1.26
SF3B1-202ENST00000409915 PRXQ9BXM0 1461 aa7.17□□□□□ -1.26
SF3B1-202ENST00000409915 SHROOM2Q13796 1616 aa7.16□□□□□ -1.26
SF3B1-202ENST00000409915 POTEFA5A3E0 1075 aa7.16□□□□□ -1.26
SF3B1-202ENST00000409915 SLC39A7Q92504 469 aa7.16□□□□□ -1.26
SF3B1-202ENST00000409915 KIAA0586Q9BVV6 1533 aa7.16□□□□□ -1.26
SF3B1-202ENST00000409915 POTEJP0CG39 1038 aa7.15□□□□□ -1.26
SF3B1-202ENST00000409915 C7P10643 843 aa7.15□□□□□ -1.26
SF3B1-202ENST00000409915 CYB5RLQ6IPT4 315 aa7.15□□□□□ -1.26
SF3B1-202ENST00000409915 PRG4Q92954 1404 aaPredicted RBP7.15□□□□□ -1.27
SF3B1-202ENST00000409915 TIE1P35590 1138 aa7.14□□□□□ -1.27
SF3B1-202ENST00000409915 IQGAP2Q13576 1575 aa7.14□□□□□ -1.27
SF3B1-202ENST00000409915 GSE1Q14687 1217 aa7.14□□□□□ -1.27
SF3B1-202ENST00000409915 EEA1Q15075 1411 aa7.14□□□□□ -1.27
SF3B1-202ENST00000409915 NEUROD2Q15784 382 aa7.14□□□□□ -1.27
SF3B1-202ENST00000409915 LMOD2Q6P5Q4 547 aa7.13□□□□□ -1.27
SF3B1-202ENST00000409915 JPH4Q96JJ6 628 aa7.13□□□□□ -1.27
SF3B1-202ENST00000409915 SGIP1Q9BQI5 828 aa7.13□□□□□ -1.27
SF3B1-202ENST00000409915 TRIM35Q9UPQ4 493 aa7.13□□□□□ -1.27
SF3B1-202ENST00000409915 CCDC9Q9Y3X0 531 aaKnown RBP7.13□□□□□ -1.27
SF3B1-202ENST00000409915 TMEM106CQ9BVX2 250 aa7.12□□□□□ -1.27
SF3B1-202ENST00000409915 COLQQ9Y215 455 aaPredicted RBP7.12□□□□□ -1.27
SF3B1-202ENST00000409915 SEC24BO95487 1268 aa7.11□□□□□ -1.27
SF3B1-202ENST00000409915 HS6ST3Q8IZP7 471 aa7.11□□□□□ -1.27
SF3B1-202ENST00000409915 RNF25Q96BH1 459 aaPredicted RBP7.11□□□□□ -1.27
SF3B1-202ENST00000409915 OTUD5Q96G74 571 aa7.11□□□□□ -1.27
SF3B1-202ENST00000409915 ARID3AQ99856 593 aa7.11□□□□□ -1.27
SF3B1-202ENST00000409915 CTTNBP2Q8WZ74 1663 aa7.11□□□□□ -1.27
SF3B1-202ENST00000409915 KIF21BO75037 1637 aa7.1□□□□□ -1.27
SF3B1-202ENST00000409915 ZMYND15Q9H091 742 aa7.1□□□□□ -1.27
SF3B1-202ENST00000409915 RSPH6AQ9H0K4 717 aa7.1□□□□□ -1.27
SF3B1-202ENST00000409915 DISP1Q96F81 1524 aa7.09□□□□□ -1.27
SF3B1-202ENST00000409915 UGGT2Q9NYU1 1516 aa7.08□□□□□ -1.28
SF3B1-202ENST00000409915 ZBTB7CA1YPR0 619 aa7.08□□□□□ -1.28
SF3B1-202ENST00000409915 CHRM1P11229 460 aaPredicted RBP7.08□□□□□ -1.28
SF3B1-202ENST00000409915 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.08□□□□□ -1.28
SF3B1-202ENST00000409915 KIAA0556O60303 1618 aa7.08□□□□□ -1.28
SF3B1-202ENST00000409915 GOLGA3Q08378 1498 aa7.07□□□□□ -1.28
SF3B1-202ENST00000409915 CARMIL2Q6F5E8 1435 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms