RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.66□□□□□ -1.58e-41■□□□□ 9.4
SF3B1-202ENST00000409915 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.92□□□□□ -1.33e-27■■□□□ 14.4
SF3B1-202ENST00000409915 RBM22Q9NW64 420 aaKnown RBP eCLIP4.32□□□□□ -1.729e-21■■■■□ 19.5
SF3B1-202ENST00000409915 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.45□□□□□ -1.78e-19■□□□□ 8
SF3B1-202ENST00000409915 HNRNPA1P09651 372 aaKnown RBP eCLIP4.74□□□□□ -1.651e-13■■■■□ 20.2
SF3B1-202ENST00000409915 U2AF1Q01081 240 aaKnown RBP eCLIP5.73□□□□□ -1.491e-13■■□□□ 13.1
SF3B1-202ENST00000409915 NCBP2P52298 156 aaKnown RBP eCLIP3.96□□□□□ -1.783e-13■■□□□ 12.1
SF3B1-202ENST00000409915 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.24□□□□□ -0.934e-13■■□□□ 14.1
SF3B1-202ENST00000409915 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.77□□□□□ -1.659e-13■■■■■ 69.7
SF3B1-202ENST00000409915 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.78□□□□□ -1.646e-12■□□□□ 9.9
SF3B1-202ENST00000409915 SMNDC1O75940 238 aaKnown RBP eCLIP4.83□□□□□ -1.641e-11■■■■□ 23.3
SF3B1-202ENST00000409915 CSTF2P33240 577 aaKnown RBP eCLIP4.55□□□□□ -1.683e-11■■■□□ 17
SF3B1-202ENST00000409915 PPIGQ13427 754 aaKnown RBP eCLIP4.8□□□□□ -1.645e-11■□□□□ 10.3
SF3B1-202ENST00000409915 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.08□□□□□ -1.67e-11■■□□□ 12.1
SF3B1-202ENST00000409915 TIA1P31483 386 aaKnown RBP eCLIP4.23□□□□□ -1.732e-10■■■■■ 34.9
SF3B1-202ENST00000409915 RBFOX2O43251 390 aaKnown RBP eCLIP3.73□□□□□ -1.813e-10■■□□□ 14.1
SF3B1-202ENST00000409915 DDX3XO00571 662 aaKnown RBP eCLIP4.87□□□□□ -1.633e-10■■■■■ 34.8
SF3B1-202ENST00000409915 KHSRPQ92945 711 aaKnown RBP eCLIP6.62□□□□□ -1.354e-10■■■■■ 27
SF3B1-202ENST00000409915 XRCC6P12956 609 aaKnown RBP eCLIP5.33□□□□□ -1.566e-10■■■■■ 46
SF3B1-202ENST00000409915 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.64□□□□□ -1.671e-9■■□□□ 13.3
SF3B1-202ENST00000409915 AQRO60306 1485 aaKnown RBP eCLIP7.43□□□□□ -1.223e-9■■□□□ 14.5
SF3B1-202ENST00000409915 U2AF2P26368 475 aaKnown RBP eCLIP5.03□□□□□ -1.63e-9■■■■■ 43.7
SF3B1-202ENST00000409915 SF3A3Q12874 501 aaKnown RBP eCLIP4.47□□□□□ -1.694e-9■■□□□ 14.1
SF3B1-202ENST00000409915 TRA2AQ13595 282 aaKnown RBP eCLIP4.45□□□□□ -1.71e-8■□□□□ 10.4
SF3B1-202ENST00000409915 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.58□□□□□ -1.842e-8■■■■■ 29.3
SF3B1-202ENST00000409915 GPKOWQ92917 476 aaPredicted RBP eCLIP5.46□□□□□ -1.543e-8■■■□□ 18.6
SF3B1-202ENST00000409915 WDR43Q15061 677 aaKnown RBP eCLIP5.69□□□□□ -1.55e-8■■□□□ 13.9
SF3B1-202ENST00000409915 SF3B4Q15427 424 aaKnown RBP eCLIP4.37□□□□□ -1.717e-8■■■■□ 22.4
SF3B1-202ENST00000409915 RPS3P23396 243 aaKnown RBP eCLIP4.17□□□□□ -1.747e-8■□□□□ 8.6
SF3B1-202ENST00000409915 FXR2P51116 673 aaKnown RBP eCLIP7.91□□□□□ -1.149e-8■■■□□ 15.1
SF3B1-202ENST00000409915 TIAL1Q01085 375 aaKnown RBP eCLIP4.28□□□□□ -1.721e-7■■■■■ 62.8
SF3B1-202ENST00000409915 FMR1Q06787 632 aaKnown RBP eCLIP5.71□□□□□ -1.52e-7■■□□□ 13.2
SF3B1-202ENST00000409915 HNRNPMP52272 730 aaKnown RBP eCLIP6.69□□□□□ -1.343e-7■■■■□ 24.6
SF3B1-202ENST00000409915 ZNF622Q969S3 477 aaKnown RBP eCLIP5.47□□□□□ -1.533e-7■■□□□ 14.4
SF3B1-202ENST00000409915 SF3B1O75533 1304 aaKnown RBP eCLIP4.64□□□□□ -1.674e-7■■■■■ 31
SF3B1-202ENST00000409915 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.44□□□□□ -1.548e-7■■■■■ 27.9
SF3B1-202ENST00000409915 SND1Q7KZF4 910 aaKnown RBP eCLIP6.36□□□□□ -1.392e-6■□□□□ 10
SF3B1-202ENST00000409915 EFTUD2Q15029 972 aaKnown RBP eCLIP4.33□□□□□ -1.722e-6■■□□□ 13.7
SF3B1-202ENST00000409915 FXR1P51114 621 aaKnown RBP eCLIP4.93□□□□□ -1.625e-6■■■□□ 17.4
Retrieved 39 of 39 RNA–protein pairs in 51.6 ms