RNA–Protein interactions for RNA: ENST00000409416.5

COL6A2-204, Transcript of collagen type VI alpha 2 chain, humanhuman

TSL 5 BASIC

Gene COL6A2, Length 3,430 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2-204ENST00000409416 CUL7Q14999 1698 aa18.29■□□□□ 0.52
COL6A2-204ENST00000409416 CTTNBP2Q8WZ74 1663 aa18.28■□□□□ 0.52
COL6A2-204ENST00000409416 CDK13Q14004 1512 aaKnown RBP18.28■□□□□ 0.52
COL6A2-204ENST00000409416 C11orf95C9JLR9 678 aaPredicted RBP18.28■□□□□ 0.52
COL6A2-204ENST00000409416 CARD11Q9BXL7 1154 aa18.27■□□□□ 0.51
COL6A2-204ENST00000409416 NBPF8Q3BBV2 869 aa18.26■□□□□ 0.51
COL6A2-204ENST00000409416 TMC1Q8TDI8 760 aa18.24■□□□□ 0.51
COL6A2-204ENST00000409416 ZNF608Q9ULD9 1512 aaPredicted RBP18.24■□□□□ 0.51
COL6A2-204ENST00000409416 PLPPR3Q6T4P5 718 aa18.23■□□□□ 0.51
COL6A2-204ENST00000409416 SUPT6HQ7KZ85 1726 aaKnown RBP18.23■□□□□ 0.51
COL6A2-204ENST00000409416 GRIN2BQ13224 1484 aa18.22■□□□□ 0.51
COL6A2-204ENST00000409416 CC2D1BQ5T0F9 858 aaKnown RBP18.22■□□□□ 0.51
COL6A2-204ENST00000409416 NPM2Q86SE8 214 aaKnown RBP18.22■□□□□ 0.51
COL6A2-204ENST00000409416 EHBP1L1Q8N3D4 1523 aa18.2■□□□□ 0.5
COL6A2-204ENST00000409416 MAGI3Q5TCQ9 1506 aa18.19■□□□□ 0.5
COL6A2-204ENST00000409416 PRKRIP1Q9H875 184 aaPredicted RBP18.18■□□□□ 0.5
COL6A2-204ENST00000409416 PRG4Q92954 1404 aaPredicted RBP18.18■□□□□ 0.5
COL6A2-204ENST00000409416 NUP155O75694 1391 aa18.17■□□□□ 0.5
COL6A2-204ENST00000409416 EPRSP07814 1512 aaKnown RBP18.14■□□□□ 0.49
COL6A2-204ENST00000409416 CCDC7Q96M83 1385 aa18.13■□□□□ 0.49
COL6A2-204ENST00000409416 LRRIQ1Q96JM4 1722 aa18.13■□□□□ 0.49
COL6A2-204ENST00000409416 KDM6BO15054 1643 aa18.13■□□□□ 0.49
COL6A2-204ENST00000409416 UGGT2Q9NYU1 1516 aa18.13■□□□□ 0.49
COL6A2-204ENST00000409416 TNNT2P45379 298 aaPredicted RBP18.12■□□□□ 0.49
COL6A2-204ENST00000409416 ST20-MTHFSA0A0A6YYL1 179 aa18.12■□□□□ 0.49
COL6A2-204ENST00000409416 NUTM2DQ5VT03 806 aaPredicted RBP18.12■□□□□ 0.49
COL6A2-204ENST00000409416 KIF7Q2M1P5 1343 aa18.11■□□□□ 0.49
COL6A2-204ENST00000409416 CNTLNQ9NXG0 1405 aa18.11■□□□□ 0.49
COL6A2-204ENST00000409416 SAMD9Q5K651 1589 aa18.11■□□□□ 0.49
COL6A2-204ENST00000409416 LAMC3Q9Y6N6 1575 aa18.11■□□□□ 0.49
COL6A2-204ENST00000409416 THOC2Q8NI27 1593 aaKnown RBP18.09■□□□□ 0.49
COL6A2-204ENST00000409416 PPP4R2Q9NY27 417 aa18.09■□□□□ 0.49
COL6A2-204ENST00000409416 ABCA5Q8WWZ7 1642 aa18.09■□□□□ 0.49
COL6A2-204ENST00000409416 HECW1Q76N89 1606 aa18.06■□□□□ 0.48
COL6A2-204ENST00000409416 MSH5O43196 834 aa18.06■□□□□ 0.48
COL6A2-204ENST00000409416 NBR1Q14596 966 aa18.06■□□□□ 0.48
COL6A2-204ENST00000409416 PLB1Q6P1J6 1458 aa18.05■□□□□ 0.48
COL6A2-204ENST00000409416 IQGAP2Q13576 1575 aa18.05■□□□□ 0.48
COL6A2-204ENST00000409416 CCDC136Q96JN2 1154 aa18.04■□□□□ 0.48
COL6A2-204ENST00000409416 SAFB2Q14151 953 aaKnown RBP eCLIP18.04■□□□□ 0.48
COL6A2-204ENST00000409416 DENND4BO75064 1496 aaPredicted RBP18.04■□□□□ 0.48
COL6A2-204ENST00000409416 DAPK1P53355 1430 aa18.04■□□□□ 0.48
COL6A2-204ENST00000409416 KIF21AQ7Z4S6 1674 aa18.04■□□□□ 0.48
COL6A2-204ENST00000409416 KDM5BQ9UGL1 1544 aa18.03■□□□□ 0.48
COL6A2-204ENST00000409416 ANKRD30BQ9BXX2 1392 aa18.02■□□□□ 0.48
COL6A2-204ENST00000409416 NEUROD2Q15784 382 aa18.02■□□□□ 0.47
COL6A2-204ENST00000409416 NBPF1Q3BBV0 1214 aa18.01■□□□□ 0.47
COL6A2-204ENST00000409416 ABCC5O15440 1437 aa18.01■□□□□ 0.47
COL6A2-204ENST00000409416 MIA2Q96PC5 1412 aa18.01■□□□□ 0.47
COL6A2-204ENST00000409416 NCOA1Q15788 1441 aa17.98■□□□□ 0.47
COL6A2-204ENST00000409416 ZBED9Q6R2W3 1325 aa17.98■□□□□ 0.47
COL6A2-204ENST00000409416 TCOF1Q13428 1488 aaKnown RBP17.98■□□□□ 0.47
COL6A2-204ENST00000409416 USP47Q96K76 1375 aa17.97■□□□□ 0.47
COL6A2-204ENST00000409416 PLIN1O60240 522 aa17.95■□□□□ 0.46
COL6A2-204ENST00000409416 AFAP1Q8N556 730 aa17.94■□□□□ 0.46
COL6A2-204ENST00000409416 AKNAQ7Z591 1439 aa17.94■□□□□ 0.46
COL6A2-204ENST00000409416 RPRD2Q5VT52 1461 aaKnown RBP17.94■□□□□ 0.46
COL6A2-204ENST00000409416 GGT6Q6P531 493 aa17.94■□□□□ 0.46
COL6A2-204ENST00000409416 ARHGEF11O15085 1522 aa17.93■□□□□ 0.46
COL6A2-204ENST00000409416 WDR62O43379 1518 aa17.93■□□□□ 0.46
COL6A2-204ENST00000409416 SKAP1Q86WV1 359 aa17.93■□□□□ 0.46
COL6A2-204ENST00000409416 TARBP1Q13395 1621 aaKnown RBP17.92■□□□□ 0.46
COL6A2-204ENST00000409416 GCC2Q8IWJ2 1684 aa17.91■□□□□ 0.46
COL6A2-204ENST00000409416 ROCK2O75116 1388 aaKnown RBP17.91■□□□□ 0.46
COL6A2-204ENST00000409416 PLEKHG5O94827 1062 aa17.91■□□□□ 0.46
COL6A2-204ENST00000409416 ANKRD30AQ9BXX3 1397 aa17.9■□□□□ 0.46
COL6A2-204ENST00000409416 CARMIL2Q6F5E8 1435 aa17.9■□□□□ 0.46
COL6A2-204ENST00000409416 NUP153P49790 1475 aaKnown RBP17.89■□□□□ 0.46
COL6A2-204ENST00000409416 PTPRGP23470 1445 aa17.89■□□□□ 0.45
COL6A2-204ENST00000409416 PBRM1Q86U86 1689 aa17.89■□□□□ 0.45
COL6A2-204ENST00000409416 MRC2Q9UBG0 1479 aa17.88■□□□□ 0.45
COL6A2-204ENST00000409416 ROCK1Q13464 1354 aa17.88■□□□□ 0.45
COL6A2-204ENST00000409416 ADAMTS12P58397 1594 aa17.88■□□□□ 0.45
COL6A2-204ENST00000409416 CCDC146Q8IYE0 955 aa17.88■□□□□ 0.45
COL6A2-204ENST00000409416 KIF3BO15066 747 aa17.87■□□□□ 0.45
COL6A2-204ENST00000409416 NUDCQ9Y266 331 aa17.87■□□□□ 0.45
COL6A2-204ENST00000409416 TEX14Q8IWB6 1497 aa17.86■□□□□ 0.45
COL6A2-204ENST00000409416 FANCIQ9NVI1 1328 aa17.86■□□□□ 0.45
COL6A2-204ENST00000409416 CAMSAP2Q08AD1 1489 aa17.86■□□□□ 0.45
COL6A2-204ENST00000409416 ERICH6BQ5W0A0 696 aa17.85■□□□□ 0.45
COL6A2-204ENST00000409416 CDCA7LQ96GN5 454 aa17.85■□□□□ 0.45
COL6A2-204ENST00000409416 KIAA0586Q9BVV6 1533 aa17.84■□□□□ 0.45
COL6A2-204ENST00000409416 TROQ12816 1431 aaPredicted RBP17.84■□□□□ 0.45
COL6A2-204ENST00000409416 ANKRD50Q9ULJ7 1429 aa17.84■□□□□ 0.45
COL6A2-204ENST00000409416 MLECQ14165 292 aa17.84■□□□□ 0.45
COL6A2-204ENST00000409416 KIF15Q9NS87 1388 aa17.83■□□□□ 0.45
COL6A2-204ENST00000409416 ANO8Q9HCE9 1232 aaPredicted RBP17.83■□□□□ 0.45
COL6A2-204ENST00000409416 KIAA1107Q9UPP5 1409 aa17.83■□□□□ 0.44
COL6A2-204ENST00000409416 PANK3Q9H999 370 aa17.83■□□□□ 0.44
COL6A2-204ENST00000409416 DISP1Q96F81 1524 aa17.83■□□□□ 0.44
COL6A2-204ENST00000409416 STK26Q9P289 416 aa17.82■□□□□ 0.44
COL6A2-204ENST00000409416 PZPP20742 1482 aa17.81■□□□□ 0.44
COL6A2-204ENST00000409416 NPM1P06748 294 aaKnown RBP eCLIP17.79■□□□□ 0.44
COL6A2-204ENST00000409416 WDR43Q15061 677 aaKnown RBP eCLIP17.79■□□□□ 0.44
COL6A2-204ENST00000409416 KIAA0556O60303 1618 aa17.79■□□□□ 0.44
COL6A2-204ENST00000409416 ANP32AP39687 249 aaKnown RBP17.79■□□□□ 0.44
COL6A2-204ENST00000409416 SPATA31E1Q6ZUB1 1445 aa17.79■□□□□ 0.44
COL6A2-204ENST00000409416 GRIN2AQ12879 1464 aa17.79■□□□□ 0.44
COL6A2-204ENST00000409416 DNMT1P26358 1616 aaKnown RBP17.79■□□□□ 0.44
COL6A2-204ENST00000409416 RAPGEF6Q8TEU7 1601 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms