RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 SPAG9O60271 1321 aaKnown RBP21.78■■□□□ 1.08
SCN3B-202ENST00000392770 PRDM2Q13029 1718 aa21.78■■□□□ 1.08
SCN3B-202ENST00000392770 MAPK8IP3Q9UPT6 1336 aa21.78■■□□□ 1.08
SCN3B-202ENST00000392770 KIF3BO15066 747 aa21.77■■□□□ 1.08
SCN3B-202ENST00000392770 CUX1P39880 1505 aa21.77■■□□□ 1.08
SCN3B-202ENST00000392770 NUDCQ9Y266 331 aa21.77■■□□□ 1.08
SCN3B-202ENST00000392770 SAFB2Q14151 953 aaKnown RBP eCLIP21.76■■□□□ 1.07
SCN3B-202ENST00000392770 L3MBTL2Q969R5 705 aa21.76■■□□□ 1.07
SCN3B-202ENST00000392770 SRPK2P78362 688 aaKnown RBP21.75■■□□□ 1.07
SCN3B-202ENST00000392770 HDGFP51858 240 aaKnown RBP21.74■■□□□ 1.07
SCN3B-202ENST00000392770 MRC2Q9UBG0 1479 aa21.72■■□□□ 1.07
SCN3B-202ENST00000392770 STK26Q9P289 416 aa21.71■■□□□ 1.07
SCN3B-202ENST00000392770 GRIN2BQ13224 1484 aa21.71■■□□□ 1.07
SCN3B-202ENST00000392770 LAS1LQ9Y4W2 734 aaKnown RBP21.71■■□□□ 1.07
SCN3B-202ENST00000392770 LRRC9Q6ZRR7 1453 aa21.7■■□□□ 1.06
SCN3B-202ENST00000392770 KTN1Q86UP2 1357 aaKnown RBP21.7■■□□□ 1.06
SCN3B-202ENST00000392770 U2SURPO15042 1029 aaKnown RBP21.69■■□□□ 1.06
SCN3B-202ENST00000392770 TOPBP1Q92547 1522 aa21.69■■□□□ 1.06
SCN3B-202ENST00000392770 A0A0G2JS52 829 aa21.68■■□□□ 1.06
SCN3B-202ENST00000392770 CASKIN1Q8WXD9 1431 aa21.67■■□□□ 1.06
SCN3B-202ENST00000392770 MORC1Q86VD1 984 aa21.67■■□□□ 1.06
SCN3B-202ENST00000392770 HAP1P54257 671 aaPredicted RBP21.67■■□□□ 1.06
SCN3B-202ENST00000392770 FGD6Q6ZV73 1430 aa21.66■■□□□ 1.06
SCN3B-202ENST00000392770 FTSJ3Q8IY81 847 aaKnown RBP21.66■■□□□ 1.06
SCN3B-202ENST00000392770 MYOM3Q5VTT5 1437 aa21.65■■□□□ 1.06
SCN3B-202ENST00000392770 ARAP1Q96P48 1450 aa21.65■■□□□ 1.06
SCN3B-202ENST00000392770 EIF3AQ14152 1382 aaKnown RBP21.64■■□□□ 1.05
SCN3B-202ENST00000392770 LMOD2Q6P5Q4 547 aa21.64■■□□□ 1.05
SCN3B-202ENST00000392770 PHLDB1Q86UU1 1377 aa21.64■■□□□ 1.05
SCN3B-202ENST00000392770 PPP4R2Q9NY27 417 aa21.63■■□□□ 1.05
SCN3B-202ENST00000392770 POLA1P09884 1462 aaPredicted RBP21.62■■□□□ 1.05
SCN3B-202ENST00000392770 WASHC2CQ9Y4E1 1318 aa21.62■■□□□ 1.05
SCN3B-202ENST00000392770 DNMBPQ6XZF7 1577 aa21.62■■□□□ 1.05
SCN3B-202ENST00000392770 FYCO1Q9BQS8 1478 aa21.61■■□□□ 1.05
SCN3B-202ENST00000392770 UNC13AQ9UPW8 1703 aa21.61■■□□□ 1.05
SCN3B-202ENST00000392770 IFT140Q96RY7 1462 aa21.6■■□□□ 1.05
SCN3B-202ENST00000392770 PNNQ9H307 717 aaKnown RBP21.6■■□□□ 1.05
SCN3B-202ENST00000392770 FRAT1Q92837 279 aaPredicted RBP21.6■■□□□ 1.05
SCN3B-202ENST00000392770 PRXQ9BXM0 1461 aa21.6■■□□□ 1.05
SCN3B-202ENST00000392770 NBR1Q14596 966 aa21.59■■□□□ 1.05
SCN3B-202ENST00000392770 CCDC144AA2RUR9 1427 aa21.59■■□□□ 1.05
SCN3B-202ENST00000392770 NCOA2Q15596 1464 aa21.59■■□□□ 1.05
SCN3B-202ENST00000392770 OSCARQ8IYS5 282 aa21.58■■□□□ 1.04
SCN3B-202ENST00000392770 RALBP1Q15311 655 aa21.58■■□□□ 1.04
SCN3B-202ENST00000392770 NUTM2DQ5VT03 806 aaPredicted RBP21.57■■□□□ 1.04
SCN3B-202ENST00000392770 EFCAB5A4FU69 1503 aa21.57■■□□□ 1.04
SCN3B-202ENST00000392770 HDGFL2Q7Z4V5 671 aaPredicted RBP21.56■■□□□ 1.04
SCN3B-202ENST00000392770 ZNF644Q9H582 1327 aaPredicted RBP21.55■■□□□ 1.04
SCN3B-202ENST00000392770 SOX12O15370 315 aa21.54■■□□□ 1.04
SCN3B-202ENST00000392770 DDRGK1Q96HY6 314 aa21.51■■□□□ 1.03
SCN3B-202ENST00000392770 SNAPC4Q5SXM2 1469 aa21.49■■□□□ 1.03
SCN3B-202ENST00000392770 B4GALNT3Q6L9W6 998 aa21.49■■□□□ 1.03
SCN3B-202ENST00000392770 CYB5RLQ6IPT4 315 aa21.48■■□□□ 1.03
SCN3B-202ENST00000392770 ANP32BQ92688 251 aaKnown RBP21.48■■□□□ 1.03
SCN3B-202ENST00000392770 PRG4Q92954 1404 aaPredicted RBP21.45■■□□□ 1.02
SCN3B-202ENST00000392770 UACAQ9BZF9 1416 aa21.45■■□□□ 1.02
SCN3B-202ENST00000392770 BECN1Q14457 450 aa21.45■■□□□ 1.02
SCN3B-202ENST00000392770 LAMC3Q9Y6N6 1575 aa21.45■■□□□ 1.02
SCN3B-202ENST00000392770 RRBP1Q9P2E9 1410 aaKnown RBP21.45■■□□□ 1.02
SCN3B-202ENST00000392770 EHBP1L1Q8N3D4 1523 aa21.44■■□□□ 1.02
SCN3B-202ENST00000392770 MS4A1P11836 297 aa21.44■■□□□ 1.02
SCN3B-202ENST00000392770 PEG3Q9GZU2 1588 aa21.44■■□□□ 1.02
SCN3B-202ENST00000392770 ST20-MTHFSA0A0A6YYL1 179 aa21.43■■□□□ 1.02
SCN3B-202ENST00000392770 RGS3P49796 1198 aa21.43■■□□□ 1.02
SCN3B-202ENST00000392770 KIF15Q9NS87 1388 aa21.43■■□□□ 1.02
SCN3B-202ENST00000392770 HECW1Q76N89 1606 aa21.43■■□□□ 1.02
SCN3B-202ENST00000392770 ARXQ96QS3 562 aa21.42■■□□□ 1.02
SCN3B-202ENST00000392770 ARHGAP5Q13017 1502 aa21.42■■□□□ 1.02
SCN3B-202ENST00000392770 SYNJ2O15056 1496 aa21.41■■□□□ 1.02
SCN3B-202ENST00000392770 TIAM1Q13009 1591 aa21.41■■□□□ 1.02
SCN3B-202ENST00000392770 TRAK1Q9UPV9 953 aa21.4■■□□□ 1.02
SCN3B-202ENST00000392770 USP47Q96K76 1375 aa21.4■■□□□ 1.02
SCN3B-202ENST00000392770 ABCA10Q8WWZ4 1543 aa21.4■■□□□ 1.02
SCN3B-202ENST00000392770 U2AF1L5P0DN76 240 aaPredicted RBP21.39■■□□□ 1.01
SCN3B-202ENST00000392770 U2AF1Q01081 240 aaKnown RBP eCLIP21.39■■□□□ 1.01
SCN3B-202ENST00000392770 CHMP4BQ9H444 224 aaKnown RBP21.38■■□□□ 1.01
SCN3B-202ENST00000392770 CASC1Q6TDU7 716 aa21.38■■□□□ 1.01
SCN3B-202ENST00000392770 PAK3O75914 559 aaPredicted RBP21.36■■□□□ 1.01
SCN3B-202ENST00000392770 EID1Q9Y6B2 187 aa21.36■■□□□ 1.01
SCN3B-202ENST00000392770 TERF2IPQ9NYB0 399 aa21.36■■□□□ 1.01
SCN3B-202ENST00000392770 ANKRD50Q9ULJ7 1429 aa21.35■■□□□ 1.01
SCN3B-202ENST00000392770 CUL7Q14999 1698 aa21.34■■□□□ 1.01
SCN3B-202ENST00000392770 RCAN3Q9UKA8 241 aa21.34■■□□□ 1.01
SCN3B-202ENST00000392770 PANK3Q9H999 370 aa21.34■■□□□ 1.01
SCN3B-202ENST00000392770 NLRP13Q86W25 1043 aa21.34■■□□□ 1.01
SCN3B-202ENST00000392770 RTF1Q92541 710 aaKnown RBP21.33■■□□□ 1
SCN3B-202ENST00000392770 MYBBP1AQ9BQG0 1328 aaKnown RBP21.32■■□□□ 1
SCN3B-202ENST00000392770 CCDC146Q8IYE0 955 aa21.31■■□□□ 1
SCN3B-202ENST00000392770 SUPT6HQ7KZ85 1726 aaKnown RBP21.31■■□□□ 1
SCN3B-202ENST00000392770 VGFO15240 615 aaPredicted RBP21.29■■□□□ 1
SCN3B-202ENST00000392770 BIVM-ERCC5R4GMW8 1640 aa21.28■■□□□ 1
SCN3B-202ENST00000392770 PCF11O94913 1555 aaKnown RBP21.27■■□□□ 1
SCN3B-202ENST00000392770 FAM69CQ0P6D2 419 aa21.27■■□□□ 1
SCN3B-202ENST00000392770 IQGAP2Q13576 1575 aa21.27■■□□□ 1
SCN3B-202ENST00000392770 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.26■□□□□ 0.99
SCN3B-202ENST00000392770 EIF5BO60841 1220 aaKnown RBP21.26■□□□□ 0.99
SCN3B-202ENST00000392770 OS9Q13438 667 aaPredicted RBP21.25■□□□□ 0.99
SCN3B-202ENST00000392770 CALD1Q05682 793 aaKnown RBP21.24■□□□□ 0.99
SCN3B-202ENST00000392770 PRKRIP1Q9H875 184 aaPredicted RBP21.24■□□□□ 0.99
SCN3B-202ENST00000392770 MIA2Q96PC5 1412 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms