RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 CDC42BPBQ9Y5S2 1711 aa21.59■■□□□ 1.05
HMGA1-203ENST00000374116 ZNF777Q9ULD5 760 aaPredicted RBP21.59■■□□□ 1.05
HMGA1-203ENST00000374116 GPATCH8Q9UKJ3 1502 aaKnown RBP21.58■■□□□ 1.05
HMGA1-203ENST00000374116 ARHGAP5Q13017 1502 aa21.57■■□□□ 1.04
HMGA1-203ENST00000374116 FANCAO15360 1455 aa21.56■■□□□ 1.04
HMGA1-203ENST00000374116 PHLDB1Q86UU1 1377 aa21.55■■□□□ 1.04
HMGA1-203ENST00000374116 PREX2Q70Z35 1606 aa21.55■■□□□ 1.04
HMGA1-203ENST00000374116 CFDP1Q9UEE9 299 aaPredicted RBP21.55■■□□□ 1.04
HMGA1-203ENST00000374116 TEX14Q8IWB6 1497 aa21.54■■□□□ 1.04
HMGA1-203ENST00000374116 ZNF644Q9H582 1327 aaPredicted RBP21.53■■□□□ 1.04
HMGA1-203ENST00000374116 EFCAB2Q5VUJ9 269 aa21.52■■□□□ 1.04
HMGA1-203ENST00000374116 COL17A1Q9UMD9 1497 aaPredicted RBP21.51■■□□□ 1.03
HMGA1-203ENST00000374116 SCAF1Q9H7N4 1312 aaKnown RBP21.5■■□□□ 1.03
HMGA1-203ENST00000374116 AKNAQ7Z591 1439 aa21.5■■□□□ 1.03
HMGA1-203ENST00000374116 ITSN2Q9NZM3 1697 aa21.48■■□□□ 1.03
HMGA1-203ENST00000374116 RAPGEF3O95398 923 aa21.48■■□□□ 1.03
HMGA1-203ENST00000374116 MYOM3Q5VTT5 1437 aa21.47■■□□□ 1.03
HMGA1-203ENST00000374116 SAMD9LQ8IVG5 1584 aa21.46■■□□□ 1.03
HMGA1-203ENST00000374116 NEO1Q92859 1461 aa21.46■■□□□ 1.03
HMGA1-203ENST00000374116 ARAP3Q8WWN8 1544 aa21.45■■□□□ 1.02
HMGA1-203ENST00000374116 ADGRL1O94910 1474 aa21.45■■□□□ 1.02
HMGA1-203ENST00000374116 KDM6BO15054 1643 aa21.45■■□□□ 1.02
HMGA1-203ENST00000374116 HNRNPMP52272 730 aaKnown RBP eCLIP21.45■■□□□ 1.02
HMGA1-203ENST00000374116 SCAPERQ9BY12 1400 aa21.44■■□□□ 1.02
HMGA1-203ENST00000374116 ARHGEF12Q9NZN5 1544 aa21.43■■□□□ 1.02
HMGA1-203ENST00000374116 CFAP74Q9C0B2 1584 aa21.43■■□□□ 1.02
HMGA1-203ENST00000374116 AFAP1Q8N556 730 aa21.41■■□□□ 1.02
HMGA1-203ENST00000374116 CAMSAP2Q08AD1 1489 aa21.4■■□□□ 1.02
HMGA1-203ENST00000374116 SYCP2Q9BX26 1530 aa21.4■■□□□ 1.02
HMGA1-203ENST00000374116 FGD6Q6ZV73 1430 aa21.4■■□□□ 1.02
HMGA1-203ENST00000374116 ABCC1P33527 1531 aa21.39■■□□□ 1.01
HMGA1-203ENST00000374116 FAM50AQ14320 339 aaKnown RBP21.38■■□□□ 1.01
HMGA1-203ENST00000374116 TRAPPC8Q9Y2L5 1435 aa21.38■■□□□ 1.01
HMGA1-203ENST00000374116 PTPN23Q9H3S7 1636 aa21.37■■□□□ 1.01
HMGA1-203ENST00000374116 DENND4BO75064 1496 aaPredicted RBP21.37■■□□□ 1.01
HMGA1-203ENST00000374116 MIA2Q96PC5 1412 aa21.36■■□□□ 1.01
HMGA1-203ENST00000374116 AEBP2Q6ZN18 517 aaPredicted RBP21.36■■□□□ 1.01
HMGA1-203ENST00000374116 CCER1Q8TC90 406 aaPredicted RBP21.36■■□□□ 1.01
HMGA1-203ENST00000374116 FRMPD1Q5SYB0 1578 aa21.36■■□□□ 1.01
HMGA1-203ENST00000374116 RICTORQ6R327 1708 aa21.34■■□□□ 1.01
HMGA1-203ENST00000374116 POGZQ7Z3K3 1410 aa21.33■■□□□ 1
HMGA1-203ENST00000374116 MYT1LQ9UL68 1186 aa21.32■■□□□ 1
HMGA1-203ENST00000374116 MBD5Q9P267 1494 aa21.32■■□□□ 1
HMGA1-203ENST00000374116 ITGAEP38570 1179 aa21.3■■□□□ 1
HMGA1-203ENST00000374116 KIAA1107Q9UPP5 1409 aa21.3■■□□□ 1
HMGA1-203ENST00000374116 PLEKHH2Q8IVE3 1493 aa21.29■■□□□ 1
HMGA1-203ENST00000374116 ZNF518AQ6AHZ1 1483 aa21.28■■□□□ 1
HMGA1-203ENST00000374116 TCOF1Q13428 1488 aaKnown RBP21.28■■□□□ 1
HMGA1-203ENST00000374116 RRBP1Q9P2E9 1410 aaKnown RBP21.25■□□□□ 0.99
HMGA1-203ENST00000374116 YEATS2Q9ULM3 1422 aa21.25■□□□□ 0.99
HMGA1-203ENST00000374116 CHIC2Q9UKJ5 165 aa21.25■□□□□ 0.99
HMGA1-203ENST00000374116 SPAG9O60271 1321 aaKnown RBP21.24■□□□□ 0.99
HMGA1-203ENST00000374116 CCDC141Q6ZP82 1450 aa21.23■□□□□ 0.99
HMGA1-203ENST00000374116 KDM5CP41229 1560 aa21.23■□□□□ 0.99
HMGA1-203ENST00000374116 ABCC5O15440 1437 aa21.22■□□□□ 0.99
HMGA1-203ENST00000374116 ARHGEF5Q12774 1597 aa21.21■□□□□ 0.99
HMGA1-203ENST00000374116 TSPY4P0CV99 314 aa21.2■□□□□ 0.98
HMGA1-203ENST00000374116 TSPY10P0CW01 314 aa21.2■□□□□ 0.98
HMGA1-203ENST00000374116 DAPK1P53355 1430 aa21.2■□□□□ 0.98
HMGA1-203ENST00000374116 KIDINS220Q9ULH0 1771 aa21.2■□□□□ 0.98
HMGA1-203ENST00000374116 HECW2Q9P2P5 1572 aa21.2■□□□□ 0.98
HMGA1-203ENST00000374116 ZMYM4Q5VZL5 1548 aa21.2■□□□□ 0.98
HMGA1-203ENST00000374116 DNMT1P26358 1616 aaKnown RBP21.19■□□□□ 0.98
HMGA1-203ENST00000374116 PTPRKQ15262 1439 aa21.18■□□□□ 0.98
HMGA1-203ENST00000374116 ZFYVE16Q7Z3T8 1539 aa21.17■□□□□ 0.98
HMGA1-203ENST00000374116 RSPH4AQ5TD94 716 aa21.17■□□□□ 0.98
HMGA1-203ENST00000374116 ATP7AQ04656 1500 aa21.17■□□□□ 0.98
HMGA1-203ENST00000374116 MLH3Q9UHC1 1453 aa21.16■□□□□ 0.98
HMGA1-203ENST00000374116 C9orf84Q5VXU9 1444 aa21.16■□□□□ 0.98
HMGA1-203ENST00000374116 CROCC2H7BZ55 1655 aa21.15■□□□□ 0.98
HMGA1-203ENST00000374116 ABCA6Q8N139 1617 aa21.15■□□□□ 0.98
HMGA1-203ENST00000374116 INO80Q9ULG1 1556 aaPredicted RBP21.15■□□□□ 0.98
HMGA1-203ENST00000374116 RRP7BPQ9NSQ0 103 aa21.13■□□□□ 0.97
HMGA1-203ENST00000374116 ARHGEF40Q8TER5 1519 aa21.13■□□□□ 0.97
HMGA1-203ENST00000374116 DIP2CQ9Y2E4 1556 aa21.12■□□□□ 0.97
HMGA1-203ENST00000374116 SIGLEC1Q9BZZ2 1709 aa21.12■□□□□ 0.97
HMGA1-203ENST00000374116 MAGI2Q86UL8 1455 aa21.12■□□□□ 0.97
HMGA1-203ENST00000374116 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.1■□□□□ 0.974e-21■□□□□ 9.5
HMGA1-203ENST00000374116 ARID4BQ4LE39 1312 aaPredicted RBP21.09■□□□□ 0.97
HMGA1-203ENST00000374116 RTEL1-TNFRSF6BF6WH68 1400 aa21.08■□□□□ 0.97
HMGA1-203ENST00000374116 ATP10AO60312 1499 aa21.08■□□□□ 0.97
HMGA1-203ENST00000374116 MAST1Q9Y2H9 1570 aa21.07■□□□□ 0.96
HMGA1-203ENST00000374116 SHANK2Q9UPX8 1470 aa21.07■□□□□ 0.96
HMGA1-203ENST00000374116 ADGBQ8N7X0 1667 aa21.06■□□□□ 0.96
HMGA1-203ENST00000374116 MLECQ14165 292 aa21.06■□□□□ 0.96
HMGA1-203ENST00000374116 ACIN1Q9UKV3 1341 aaKnown RBP21.06■□□□□ 0.96
HMGA1-203ENST00000374116 KIF15Q9NS87 1388 aa21.04■□□□□ 0.96
HMGA1-203ENST00000374116 NCOA1Q15788 1441 aa21.04■□□□□ 0.96
HMGA1-203ENST00000374116 A2MP01023 1474 aa21.03■□□□□ 0.96
HMGA1-203ENST00000374116 ANKRD30AQ9BXX3 1397 aa21.03■□□□□ 0.96
HMGA1-203ENST00000374116 PLXNC1O60486 1568 aa21.01■□□□□ 0.95
HMGA1-203ENST00000374116 DHX29Q7Z478 1369 aaKnown RBP21■□□□□ 0.95
HMGA1-203ENST00000374116 ADGRL2O95490 1459 aa20.99■□□□□ 0.95
HMGA1-203ENST00000374116 KIF3BO15066 747 aa20.98■□□□□ 0.95
HMGA1-203ENST00000374116 GGT6Q6P531 493 aa20.97■□□□□ 0.95
HMGA1-203ENST00000374116 DUOX2Q9NRD8 1548 aa20.95■□□□□ 0.94
HMGA1-203ENST00000374116 ROCK1Q13464 1354 aa20.94■□□□□ 0.94
HMGA1-203ENST00000374116 REREQ9P2R6 1566 aa20.94■□□□□ 0.94
HMGA1-203ENST00000374116 ANKRD50Q9ULJ7 1429 aa20.92■□□□□ 0.94
HMGA1-203ENST00000374116 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.91■□□□□ 0.942e-6■■□□□ 14.5
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms