RNA–Protein interactions for RNA: ENST00000373233.7

CHD6-203, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD6, Length 10,818 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-203ENST00000373233 PTPRGP23470 1445 aa8.83□□□□□ -1
CHD6-203ENST00000373233 CNGB1Q14028 1251 aaPredicted RBP8.83□□□□□ -1
CHD6-203ENST00000373233 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.82□□□□□ -12e-7■■□□□ 13.6
CHD6-203ENST00000373233 MYOM3Q5VTT5 1437 aa8.82□□□□□ -1
CHD6-203ENST00000373233 FGD6Q6ZV73 1430 aa8.82□□□□□ -1
CHD6-203ENST00000373233 NCOA2Q15596 1464 aa8.82□□□□□ -1
CHD6-203ENST00000373233 MAP3K1Q13233 1512 aa8.81□□□□□ -1
CHD6-203ENST00000373233 PHLDB1Q86UU1 1377 aa8.81□□□□□ -1
CHD6-203ENST00000373233 THOC2Q8NI27 1593 aaKnown RBP8.8□□□□□ -1
CHD6-203ENST00000373233 PRG4Q92954 1404 aaPredicted RBP8.8□□□□□ -1
CHD6-203ENST00000373233 RRBP1Q9P2E9 1410 aaKnown RBP8.8□□□□□ -1
CHD6-203ENST00000373233 SLC4A1APQ9BWU0 796 aaKnown RBP8.8□□□□□ -1
CHD6-203ENST00000373233 A0A0U1RQG5 324 aaPredicted RBP8.8□□□□□ -1
CHD6-203ENST00000373233 CDK13Q14004 1512 aaKnown RBP8.8□□□□□ -1
CHD6-203ENST00000373233 RAPGEF6Q8TEU7 1601 aa8.79□□□□□ -1
CHD6-203ENST00000373233 EPRSP07814 1512 aaKnown RBP8.78□□□□□ -1
CHD6-203ENST00000373233 NOP58Q9Y2X3 529 aaKnown RBP8.78□□□□□ -1
CHD6-203ENST00000373233 PTPN23Q9H3S7 1636 aa8.78□□□□□ -1
CHD6-203ENST00000373233 HSP90AA1P07900 732 aaKnown RBP8.78□□□□□ -1
CHD6-203ENST00000373233 KIAA0556O60303 1618 aa8.77□□□□□ -1.01
CHD6-203ENST00000373233 CHD1O14646 1710 aa8.76□□□□□ -1.01
CHD6-203ENST00000373233 SAMD9Q5K651 1589 aa8.76□□□□□ -1.01
CHD6-203ENST00000373233 ANKRD30AQ9BXX3 1397 aa8.76□□□□□ -1.01
CHD6-203ENST00000373233 ITSN2Q9NZM3 1697 aa8.76□□□□□ -1.01
CHD6-203ENST00000373233 VSIG10Q8N0Z9 540 aa8.75□□□□□ -1.01
CHD6-203ENST00000373233 KIF14Q15058 1648 aa8.75□□□□□ -1.01
CHD6-203ENST00000373233 UGGT2Q9NYU1 1516 aa8.74□□□□□ -1.01
CHD6-203ENST00000373233 SIN3AQ96ST3 1273 aa8.74□□□□□ -1.01
CHD6-203ENST00000373233 LAS1LQ9Y4W2 734 aaKnown RBP8.74□□□□□ -1.01
CHD6-203ENST00000373233 DHX57Q6P158 1386 aaKnown RBP8.74□□□□□ -1.01
CHD6-203ENST00000373233 RSPH6AQ9H0K4 717 aa8.73□□□□□ -1.01
CHD6-203ENST00000373233 CANXP27824 592 aaKnown RBP8.72□□□□□ -1.01
CHD6-203ENST00000373233 ARID4BQ4LE39 1312 aaPredicted RBP8.72□□□□□ -1.01
CHD6-203ENST00000373233 ARHGAP5Q13017 1502 aa8.72□□□□□ -1.01
CHD6-203ENST00000373233 UPF2Q9HAU5 1272 aaKnown RBP8.72□□□□□ -1.01
CHD6-203ENST00000373233 DDRGK1Q96HY6 314 aa8.71□□□□□ -1.01
CHD6-203ENST00000373233 TROQ12816 1431 aaPredicted RBP8.71□□□□□ -1.02
CHD6-203ENST00000373233 CEP170Q5SW79 1584 aa8.7□□□□□ -1.02
CHD6-203ENST00000373233 PPM1GO15355 546 aaPredicted RBP8.7□□□□□ -1.02
CHD6-203ENST00000373233 OSCARQ8IYS5 282 aa8.7□□□□□ -1.02
CHD6-203ENST00000373233 KDM2AQ9Y2K7 1162 aa8.7□□□□□ -1.02
CHD6-203ENST00000373233 KANK1Q14678 1352 aa8.7□□□□□ -1.02
CHD6-203ENST00000373233 SUPT16HQ9Y5B9 1047 aaKnown RBP8.7□□□□□ -1.02
CHD6-203ENST00000373233 ESF1Q9H501 851 aaKnown RBP8.7□□□□□ -1.02
CHD6-203ENST00000373233 HSP90AA2PQ14568 343 aaPredicted RBP8.69□□□□□ -1.02
CHD6-203ENST00000373233 EFCAB2Q5VUJ9 269 aa8.69□□□□□ -1.02
CHD6-203ENST00000373233 DDX10Q13206 875 aaKnown RBP8.69□□□□□ -1.02
CHD6-203ENST00000373233 CHGAP10645 457 aaKnown RBP8.68□□□□□ -1.02
CHD6-203ENST00000373233 PLB1Q6P1J6 1458 aa8.68□□□□□ -1.02
CHD6-203ENST00000373233 MIA2Q96PC5 1412 aa8.68□□□□□ -1.02
CHD6-203ENST00000373233 FOXD1Q16676 465 aa8.67□□□□□ -1.02
CHD6-203ENST00000373233 HNRNPMP52272 730 aaKnown RBP eCLIP8.67□□□□□ -1.026e-8■■■■■ 31.3
CHD6-203ENST00000373233 HIRIP3Q9BW71 556 aaPredicted RBP8.67□□□□□ -1.02
CHD6-203ENST00000373233 NUP155O75694 1391 aa8.67□□□□□ -1.02
CHD6-203ENST00000373233 CAMSAP2Q08AD1 1489 aa8.67□□□□□ -1.02
CHD6-203ENST00000373233 MPHOSPH9Q99550 1183 aa8.66□□□□□ -1.02
CHD6-203ENST00000373233 MIER1Q8N108 512 aa8.66□□□□□ -1.02
CHD6-203ENST00000373233 PKD2Q13563 968 aa8.66□□□□□ -1.02
CHD6-203ENST00000373233 EIF4G2P78344 907 aaKnown RBP eCLIP8.66□□□□□ -1.02
CHD6-203ENST00000373233 UACAQ9BZF9 1416 aa8.65□□□□□ -1.02
CHD6-203ENST00000373233 STAG3Q9UJ98 1225 aa8.65□□□□□ -1.02
CHD6-203ENST00000373233 ZNF644Q9H582 1327 aaPredicted RBP8.65□□□□□ -1.02
CHD6-203ENST00000373233 TIMELESSQ9UNS1 1208 aa8.65□□□□□ -1.02
CHD6-203ENST00000373233 ARID3AQ99856 593 aa8.65□□□□□ -1.02
CHD6-203ENST00000373233 IRX6P78412 446 aaPredicted RBP8.65□□□□□ -1.03
CHD6-203ENST00000373233 RSPH4AQ5TD94 716 aa8.65□□□□□ -1.03
CHD6-203ENST00000373233 PTMAP06454 111 aaKnown RBP8.64□□□□□ -1.03
CHD6-203ENST00000373233 NUP153P49790 1475 aaKnown RBP8.64□□□□□ -1.03
CHD6-203ENST00000373233 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.64□□□□□ -1.03
CHD6-203ENST00000373233 DAPK1P53355 1430 aa8.64□□□□□ -1.03
CHD6-203ENST00000373233 PNNQ9H307 717 aaKnown RBP8.64□□□□□ -1.03
CHD6-203ENST00000373233 C9orf84Q5VXU9 1444 aa8.64□□□□□ -1.03
CHD6-203ENST00000373233 HFM1A2PYH4 1435 aa8.64□□□□□ -1.03
CHD6-203ENST00000373233 ADGBQ8N7X0 1667 aa8.64□□□□□ -1.03
CHD6-203ENST00000373233 HNRNPUQ00839 825 aaKnown RBP eCLIP8.64□□□□□ -1.03
CHD6-203ENST00000373233 NUP160Q12769 1436 aa8.64□□□□□ -1.03
CHD6-203ENST00000373233 SPAG9O60271 1321 aaKnown RBP8.63□□□□□ -1.03
CHD6-203ENST00000373233 BECN1Q14457 450 aa8.63□□□□□ -1.03
CHD6-203ENST00000373233 DISP1Q96F81 1524 aa8.63□□□□□ -1.03
CHD6-203ENST00000373233 ARHGEF11O15085 1522 aa8.63□□□□□ -1.03
CHD6-203ENST00000373233 PLEKHH2Q8IVE3 1493 aa8.62□□□□□ -1.03
CHD6-203ENST00000373233 KIF15Q9NS87 1388 aa8.62□□□□□ -1.03
CHD6-203ENST00000373233 RGL3Q3MIN7 710 aa8.62□□□□□ -1.03
CHD6-203ENST00000373233 DNTTIP2Q5QJE6 756 aaKnown RBP8.62□□□□□ -1.03
CHD6-203ENST00000373233 L1TD1Q5T7N2 865 aaKnown RBP8.62□□□□□ -1.03
CHD6-203ENST00000373233 TNNT3P45378 269 aaPredicted RBP8.62□□□□□ -1.03
CHD6-203ENST00000373233 RBM19Q9Y4C8 960 aaKnown RBP8.62□□□□□ -1.03
CHD6-203ENST00000373233 LRRIQ1Q96JM4 1722 aa8.61□□□□□ -1.03
CHD6-203ENST00000373233 ANO8Q9HCE9 1232 aaPredicted RBP8.61□□□□□ -1.03
CHD6-203ENST00000373233 PTMSP20962 102 aa8.61□□□□□ -1.03
CHD6-203ENST00000373233 GCC2Q8IWJ2 1684 aa8.6□□□□□ -1.03
CHD6-203ENST00000373233 MYO5CQ9NQX4 1742 aa8.59□□□□□ -1.03
CHD6-203ENST00000373233 PLPPR3Q6T4P5 718 aa8.59□□□□□ -1.03
CHD6-203ENST00000373233 ANKRD50Q9ULJ7 1429 aa8.58□□□□□ -1.04
CHD6-203ENST00000373233 TSHZ2Q9NRE2 1034 aa8.58□□□□□ -1.04
CHD6-203ENST00000373233 CARD11Q9BXL7 1154 aa8.58□□□□□ -1.04
CHD6-203ENST00000373233 ROCK1Q13464 1354 aa8.58□□□□□ -1.04
CHD6-203ENST00000373233 CCDC141Q6ZP82 1450 aa8.57□□□□□ -1.04
CHD6-203ENST00000373233 NAIPQ13075 1403 aa8.57□□□□□ -1.04
CHD6-203ENST00000373233 DNMT1P26358 1616 aaKnown RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms