RNA–Protein interactions for RNA: ENST00000373233.7

CHD6-203, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD6, Length 10,818 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-203ENST00000373233 NISCHQ9Y2I1 1504 aa12.75□□□□□ -0.37
CHD6-203ENST00000373233 DCAF8L2P0C7V8 631 aa11.36□□□□□ -0.59
CHD6-203ENST00000373233 SHROOM4Q9ULL8 1493 aa11.08□□□□□ -0.64
CHD6-203ENST00000373233 MYT1Q01538 1121 aa11.08□□□□□ -0.64
CHD6-203ENST00000373233 CCDC180Q9P1Z9 1646 aa11.07□□□□□ -0.64
CHD6-203ENST00000373233 PELP1Q8IZL8 1130 aaKnown RBP11.07□□□□□ -0.64
CHD6-203ENST00000373233 SUPT5HO00267 1087 aaKnown RBP10.82□□□□□ -0.68
CHD6-203ENST00000373233 ZCCHC6Q5VYS8 1495 aaKnown RBP10.67□□□□□ -0.7
CHD6-203ENST00000373233 ABCC9O60706 1549 aa10.65□□□□□ -0.7
CHD6-203ENST00000373233 SCRIBQ14160 1630 aa10.48□□□□□ -0.73
CHD6-203ENST00000373233 DCAF1Q9Y4B6 1507 aa10.36□□□□□ -0.75
CHD6-203ENST00000373233 TTBK1Q5TCY1 1321 aaPredicted RBP10.36□□□□□ -0.75
CHD6-203ENST00000373233 NACADO15069 1562 aa10.36□□□□□ -0.75
CHD6-203ENST00000373233 RB1CC1Q8TDY2 1594 aa10.35□□□□□ -0.75
CHD6-203ENST00000373233 ERICH6Q7L0X2 663 aa10.31□□□□□ -0.76
CHD6-203ENST00000373233 CENPBP07199 599 aaPredicted RBP10.28□□□□□ -0.76
CHD6-203ENST00000373233 PABPN1Q86U42 306 aaKnown RBP eCLIP10.19□□□□□ -0.78
CHD6-203ENST00000373233 CCER1Q8TC90 406 aaPredicted RBP10.15□□□□□ -0.78
CHD6-203ENST00000373233 MYO15BQ96JP2 1530 aa10.14□□□□□ -0.79
CHD6-203ENST00000373233 EHMT2Q96KQ7 1210 aa10.13□□□□□ -0.79
CHD6-203ENST00000373233 TRIM41Q8WV44 630 aa10.12□□□□□ -0.79
CHD6-203ENST00000373233 FAM9AQ8IZU1 332 aaPredicted RBP10.08□□□□□ -0.8
CHD6-203ENST00000373233 CHIC1Q5VXU3 224 aa10.05□□□□□ -0.8
CHD6-203ENST00000373233 PCGF6Q9BYE7 350 aa10.02□□□□□ -0.81
CHD6-203ENST00000373233 ZEB1P37275 1124 aaPredicted RBP9.98□□□□□ -0.81
CHD6-203ENST00000373233 RSF1Q96T23 1441 aaPredicted RBP9.95□□□□□ -0.82
CHD6-203ENST00000373233 BAZ1AQ9NRL2 1556 aaPredicted RBP9.95□□□□□ -0.82
CHD6-203ENST00000373233 UNC13AQ9UPW8 1703 aa9.93□□□□□ -0.82
CHD6-203ENST00000373233 CECR2Q9BXF3 1484 aa9.89□□□□□ -0.83
CHD6-203ENST00000373233 YTHDC1Q96MU7 727 aaKnown RBP9.89□□□□□ -0.83
CHD6-203ENST00000373233 WIZO95785 1651 aa9.88□□□□□ -0.83
CHD6-203ENST00000373233 NEFLP07196 543 aa9.86□□□□□ -0.83
CHD6-203ENST00000373233 SMARCA4P51532 1647 aa9.86□□□□□ -0.83
CHD6-203ENST00000373233 MROH2BQ7Z745 1585 aa9.85□□□□□ -0.83
CHD6-203ENST00000373233 UBTFP17480 764 aaKnown RBP9.84□□□□□ -0.83
CHD6-203ENST00000373233 APLP2Q06481 763 aa9.83□□□□□ -0.84
CHD6-203ENST00000373233 HRCP23327 699 aa9.82□□□□□ -0.84
CHD6-203ENST00000373233 BAZ1BQ9UIG0 1483 aaKnown RBP9.82□□□□□ -0.84
CHD6-203ENST00000373233 RANGAP1P46060 587 aaPredicted RBP9.8□□□□□ -0.84
CHD6-203ENST00000373233 LOC105371045A0A1W2PR82 267 aa9.79□□□□□ -0.84
CHD6-203ENST00000373233 TOP2AP11388 1531 aaKnown RBP9.78□□□□□ -0.84
CHD6-203ENST00000373233 SMARCA2P51531 1590 aa9.77□□□□□ -0.85
CHD6-203ENST00000373233 RTL5Q5HYW3 569 aaPredicted RBP9.72□□□□□ -0.85
CHD6-203ENST00000373233 CCDC88BA6NC98 1476 aa9.68□□□□□ -0.86
CHD6-203ENST00000373233 BICRAQ9NZM4 1560 aa9.65□□□□□ -0.86
CHD6-203ENST00000373233 PPARGC1BQ86YN6 1023 aaKnown RBP9.62□□□□□ -0.87
CHD6-203ENST00000373233 ABCC8Q09428 1581 aa9.61□□□□□ -0.87
CHD6-203ENST00000373233 DAXXQ9UER7 740 aaPredicted RBP9.6□□□□□ -0.87
CHD6-203ENST00000373233 ATAD2BQ9ULI0 1458 aa9.6□□□□□ -0.87
CHD6-203ENST00000373233 TRIM26Q12899 539 aaPredicted RBP9.59□□□□□ -0.87
CHD6-203ENST00000373233 GLIPR1L2Q4G1C9 344 aa9.59□□□□□ -0.87
CHD6-203ENST00000373233 ATP1B4Q9UN42 357 aaPredicted RBP9.59□□□□□ -0.87
CHD6-203ENST00000373233 WRNQ14191 1432 aaPredicted RBP eCLIP9.58□□□□□ -0.886e-12■■□□□ 14.4
CHD6-203ENST00000373233 EIF4G1Q04637 1599 aaKnown RBP9.57□□□□□ -0.88
CHD6-203ENST00000373233 CSRNP3Q8WYN3 585 aa9.55□□□□□ -0.88
CHD6-203ENST00000373233 GTF3C3Q9Y5Q9 886 aa9.55□□□□□ -0.88
CHD6-203ENST00000373233 EIF5BO60841 1220 aaKnown RBP9.54□□□□□ -0.88
CHD6-203ENST00000373233 EEA1Q15075 1411 aa9.53□□□□□ -0.88
CHD6-203ENST00000373233 HMGXB3Q12766 1538 aa9.48□□□□□ -0.89
CHD6-203ENST00000373233 CC2D2AQ9P2K1 1620 aa9.47□□□□□ -0.89
CHD6-203ENST00000373233 GOLGA3Q08378 1498 aa9.47□□□□□ -0.89
CHD6-203ENST00000373233 BCL11AQ9H165 835 aa9.46□□□□□ -0.89
CHD6-203ENST00000373233 PEG3Q9GZU2 1588 aa9.45□□□□□ -0.9
CHD6-203ENST00000373233 ZNF316A6NFI3 1004 aaPredicted RBP9.44□□□□□ -0.9
CHD6-203ENST00000373233 KIF27Q86VH2 1401 aa9.43□□□□□ -0.9
CHD6-203ENST00000373233 NCAPD3P42695 1498 aa9.43□□□□□ -0.9
CHD6-203ENST00000373233 CEP164Q9UPV0 1460 aa9.43□□□□□ -0.9
CHD6-203ENST00000373233 SOGA1O94964 1423 aa9.42□□□□□ -0.9
CHD6-203ENST00000373233 ACIN1Q9UKV3 1341 aaKnown RBP9.41□□□□□ -0.9
CHD6-203ENST00000373233 CEP162Q5TB80 1403 aa9.4□□□□□ -0.9
CHD6-203ENST00000373233 CLIP1P30622 1438 aa9.4□□□□□ -0.9
CHD6-203ENST00000373233 ERCC6Q03468 1493 aa9.39□□□□□ -0.91
CHD6-203ENST00000373233 MYT1LQ9UL68 1186 aa9.39□□□□□ -0.91
CHD6-203ENST00000373233 PRDM2Q13029 1718 aa9.39□□□□□ -0.91
CHD6-203ENST00000373233 CADPSQ9ULU8 1353 aa9.37□□□□□ -0.91
CHD6-203ENST00000373233 HNRNPUL2Q1KMD3 747 aaKnown RBP9.37□□□□□ -0.91
CHD6-203ENST00000373233 SYNJ1O43426 1573 aa9.37□□□□□ -0.91
CHD6-203ENST00000373233 TNIKQ9UKE5 1360 aa9.36□□□□□ -0.91
CHD6-203ENST00000373233 CUX2O14529 1486 aa9.35□□□□□ -0.91
CHD6-203ENST00000373233 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.35□□□□□ -0.91
CHD6-203ENST00000373233 DIEXFQ68CQ4 756 aaKnown RBP9.35□□□□□ -0.91
CHD6-203ENST00000373233 PDS5BQ9NTI5 1447 aa9.34□□□□□ -0.91
CHD6-203ENST00000373233 ITGAEP38570 1179 aa9.34□□□□□ -0.91
CHD6-203ENST00000373233 BCANQ96GW7 911 aa9.34□□□□□ -0.91
CHD6-203ENST00000373233 FANCD2Q9BXW9 1451 aa9.34□□□□□ -0.92
CHD6-203ENST00000373233 FBLN2P98095 1184 aa9.33□□□□□ -0.92
CHD6-203ENST00000373233 TOP2BQ02880 1626 aa9.33□□□□□ -0.92
CHD6-203ENST00000373233 SCAF1Q9H7N4 1312 aaKnown RBP9.32□□□□□ -0.92
CHD6-203ENST00000373233 P3H3Q8IVL6 736 aa9.32□□□□□ -0.92
CHD6-203ENST00000373233 CLSPNQ9HAW4 1339 aa9.29□□□□□ -0.92
CHD6-203ENST00000373233 CFTRP13569 1480 aa9.29□□□□□ -0.92
CHD6-203ENST00000373233 FAM50AQ14320 339 aaKnown RBP9.28□□□□□ -0.92
CHD6-203ENST00000373233 KIF21BO75037 1637 aa9.28□□□□□ -0.92
CHD6-203ENST00000373233 RUSC2Q8N2Y8 1516 aa9.26□□□□□ -0.93
CHD6-203ENST00000373233 FGD5Q6ZNL6 1462 aa9.26□□□□□ -0.93
CHD6-203ENST00000373233 CARMIL1Q5VZK9 1371 aa9.26□□□□□ -0.93
CHD6-203ENST00000373233 CUX1P39880 1505 aa9.25□□□□□ -0.93
CHD6-203ENST00000373233 ANP32EQ9BTT0 268 aa9.25□□□□□ -0.93
CHD6-203ENST00000373233 BIVM-ERCC5R4GMW8 1640 aa9.24□□□□□ -0.93
CHD6-203ENST00000373233 RAPGEF2Q9Y4G8 1499 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms