RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 SALL2Q9Y467 1007 aaPredicted RBP7.53□□□□□ -1.2
ATG4A-204ENST00000372246 FANCIQ9NVI1 1328 aa7.53□□□□□ -1.2
ATG4A-204ENST00000372246 IL27Q8NEV9 243 aa7.52□□□□□ -1.21
ATG4A-204ENST00000372246 PHF12Q96QT6 1004 aa7.52□□□□□ -1.21
ATG4A-204ENST00000372246 ZBTB47Q9UFB7 747 aaPredicted RBP7.52□□□□□ -1.21
ATG4A-204ENST00000372246 CCER2I3L3R5 266 aa7.51□□□□□ -1.21
ATG4A-204ENST00000372246 C11orf95C9JLR9 678 aaPredicted RBP7.51□□□□□ -1.21
ATG4A-204ENST00000372246 TSPYL2Q9H2G4 693 aaPredicted RBP7.51□□□□□ -1.21
ATG4A-204ENST00000372246 CCDC61Q9Y6R9 512 aa7.51□□□□□ -1.21
ATG4A-204ENST00000372246 PRXQ9BXM0 1461 aa7.51□□□□□ -1.21
ATG4A-204ENST00000372246 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.5□□□□□ -1.21
ATG4A-204ENST00000372246 CUX2O14529 1486 aa7.5□□□□□ -1.21
ATG4A-204ENST00000372246 EIF5BO60841 1220 aaKnown RBP7.5□□□□□ -1.21
ATG4A-204ENST00000372246 CLCN6P51797 869 aa7.5□□□□□ -1.21
ATG4A-204ENST00000372246 WASHC2AQ641Q2 1341 aa7.49□□□□□ -1.21
ATG4A-204ENST00000372246 UNC13AQ9UPW8 1703 aa7.49□□□□□ -1.21
ATG4A-204ENST00000372246 HSPA5P11021 654 aaKnown RBP7.48□□□□□ -1.21
ATG4A-204ENST00000372246 CHIC2Q9UKJ5 165 aa7.48□□□□□ -1.21
ATG4A-204ENST00000372246 TONSLQ96HA7 1378 aa7.48□□□□□ -1.21
ATG4A-204ENST00000372246 IFNLR1Q8IU57 520 aaPredicted RBP7.48□□□□□ -1.21
ATG4A-204ENST00000372246 POLR3GLQ9BT43 218 aa7.48□□□□□ -1.21
ATG4A-204ENST00000372246 GALR2O43603 387 aaPredicted RBP7.47□□□□□ -1.21
ATG4A-204ENST00000372246 NPM2Q86SE8 214 aaKnown RBP7.47□□□□□ -1.21
ATG4A-204ENST00000372246 SKAP1Q86WV1 359 aa7.47□□□□□ -1.21
ATG4A-204ENST00000372246 PPP4R2Q9NY27 417 aa7.47□□□□□ -1.21
ATG4A-204ENST00000372246 NOP58Q9Y2X3 529 aaKnown RBP7.47□□□□□ -1.21
ATG4A-204ENST00000372246 ARID3CA6NKF2 412 aa7.46□□□□□ -1.21
ATG4A-204ENST00000372246 POTEIP0CG38 1075 aa7.46□□□□□ -1.21
ATG4A-204ENST00000372246 AQRO60306 1485 aaKnown RBP eCLIP7.46□□□□□ -1.221e-6■■■■■ 33.8
ATG4A-204ENST00000372246 ATAD2BQ9ULI0 1458 aa7.46□□□□□ -1.22
ATG4A-204ENST00000372246 MRS2Q9HD23 443 aa7.46□□□□□ -1.22
ATG4A-204ENST00000372246 RRP7BPQ9NSQ0 103 aa7.46□□□□□ -1.22
ATG4A-204ENST00000372246 AKNAQ7Z591 1439 aa7.45□□□□□ -1.22
ATG4A-204ENST00000372246 LAS1LQ9Y4W2 734 aaKnown RBP7.45□□□□□ -1.22
ATG4A-204ENST00000372246 TOP2BQ02880 1626 aa7.44□□□□□ -1.22
ATG4A-204ENST00000372246 CUX1P39880 1505 aa7.44□□□□□ -1.22
ATG4A-204ENST00000372246 KIF12Q96FN5 646 aa7.44□□□□□ -1.22
ATG4A-204ENST00000372246 PTPRKQ15262 1439 aa7.44□□□□□ -1.22
ATG4A-204ENST00000372246 LRRC9Q6ZRR7 1453 aa7.43□□□□□ -1.22
ATG4A-204ENST00000372246 KLHL34Q8N239 644 aa7.43□□□□□ -1.22
ATG4A-204ENST00000372246 MS4A3Q96HJ5 214 aa7.43□□□□□ -1.22
ATG4A-204ENST00000372246 BICRAQ9NZM4 1560 aa7.42□□□□□ -1.22
ATG4A-204ENST00000372246 FHOD3Q2V2M9 1422 aa7.42□□□□□ -1.22
ATG4A-204ENST00000372246 TIAM1Q13009 1591 aa7.42□□□□□ -1.22
ATG4A-204ENST00000372246 KIF27Q86VH2 1401 aa7.41□□□□□ -1.22
ATG4A-204ENST00000372246 FAM212AQ96EL1 285 aa7.41□□□□□ -1.22
ATG4A-204ENST00000372246 ERICH3Q5RHP9 1530 aa7.41□□□□□ -1.22
ATG4A-204ENST00000372246 IGF1RP08069 1367 aa7.4□□□□□ -1.22
ATG4A-204ENST00000372246 MAP3K13O43283 966 aa7.4□□□□□ -1.22
ATG4A-204ENST00000372246 PRKRIP1Q9H875 184 aaPredicted RBP7.4□□□□□ -1.23
ATG4A-204ENST00000372246 ZNF326Q5BKZ1 582 aaKnown RBP7.39□□□□□ -1.23
ATG4A-204ENST00000372246 NBPF8Q3BBV2 869 aa7.38□□□□□ -1.23
ATG4A-204ENST00000372246 L3MBTL2Q969R5 705 aa7.38□□□□□ -1.23
ATG4A-204ENST00000372246 SLC4A3P48751 1232 aa7.38□□□□□ -1.23
ATG4A-204ENST00000372246 DCBLD2Q96PD2 775 aa7.38□□□□□ -1.23
ATG4A-204ENST00000372246 CCDC18Q5T9S5 1454 aa7.37□□□□□ -1.23
ATG4A-204ENST00000372246 CARMIL1Q5VZK9 1371 aa7.37□□□□□ -1.23
ATG4A-204ENST00000372246 DCAF8Q5TAQ9 597 aa7.37□□□□□ -1.23
ATG4A-204ENST00000372246 UBE2Q2Q8WVN8 375 aa7.37□□□□□ -1.23
ATG4A-204ENST00000372246 SPOCK2Q92563 424 aa7.37□□□□□ -1.23
ATG4A-204ENST00000372246 IPO9Q96P70 1041 aaKnown RBP7.37□□□□□ -1.23
ATG4A-204ENST00000372246 PCF11O94913 1555 aaKnown RBP7.37□□□□□ -1.23
ATG4A-204ENST00000372246 KDM5BQ9UGL1 1544 aa7.36□□□□□ -1.23
ATG4A-204ENST00000372246 EIF4G2P78344 907 aaKnown RBP eCLIP7.36□□□□□ -1.23
ATG4A-204ENST00000372246 RTL5Q5HYW3 569 aaPredicted RBP7.36□□□□□ -1.23
ATG4A-204ENST00000372246 TRPC6Q9Y210 931 aa7.36□□□□□ -1.23
ATG4A-204ENST00000372246 BRPF3Q9ULD4 1205 aa7.36□□□□□ -1.23
ATG4A-204ENST00000372246 BIVM-ERCC5R4GMW8 1640 aa7.35□□□□□ -1.23
ATG4A-204ENST00000372246 ANP32AP39687 249 aaKnown RBP7.35□□□□□ -1.23
ATG4A-204ENST00000372246 NEFMP07197 916 aa7.35□□□□□ -1.23
ATG4A-204ENST00000372246 EXOC6Q8TAG9 804 aa7.34□□□□□ -1.23
ATG4A-204ENST00000372246 SGIP1Q9BQI5 828 aa7.34□□□□□ -1.23
ATG4A-204ENST00000372246 TIMELESSQ9UNS1 1208 aa7.34□□□□□ -1.23
ATG4A-204ENST00000372246 PEG3Q9GZU2 1588 aa7.34□□□□□ -1.23
ATG4A-204ENST00000372246 KIF7Q2M1P5 1343 aa7.34□□□□□ -1.23
ATG4A-204ENST00000372246 ZBED9Q6R2W3 1325 aa7.34□□□□□ -1.23
ATG4A-204ENST00000372246 ASTLQ6HA08 431 aaPredicted RBP7.34□□□□□ -1.23
ATG4A-204ENST00000372246 PLIN1O60240 522 aa7.33□□□□□ -1.24
ATG4A-204ENST00000372246 PYGBP11216 843 aa7.33□□□□□ -1.24
ATG4A-204ENST00000372246 FGD6Q6ZV73 1430 aa7.33□□□□□ -1.24
ATG4A-204ENST00000372246 CNTLNQ9NXG0 1405 aa7.33□□□□□ -1.24
ATG4A-204ENST00000372246 CCDC7Q96M83 1385 aa7.33□□□□□ -1.24
ATG4A-204ENST00000372246 GSE1Q14687 1217 aa7.33□□□□□ -1.24
ATG4A-204ENST00000372246 IFNL1Q8IU54 200 aa7.33□□□□□ -1.24
ATG4A-204ENST00000372246 PCDHB13Q9Y5F0 798 aa7.33□□□□□ -1.24
ATG4A-204ENST00000372246 DENND4BO75064 1496 aaPredicted RBP7.32□□□□□ -1.24
ATG4A-204ENST00000372246 NAIPQ13075 1403 aa7.32□□□□□ -1.24
ATG4A-204ENST00000372246 MTUS2Q5JR59 1369 aa7.32□□□□□ -1.24
ATG4A-204ENST00000372246 ATMINO43313 823 aaPredicted RBP7.32□□□□□ -1.24
ATG4A-204ENST00000372246 FHAD1B1AJZ9 1412 aa7.31□□□□□ -1.24
ATG4A-204ENST00000372246 UACAQ9BZF9 1416 aa7.31□□□□□ -1.24
ATG4A-204ENST00000372246 KDM6BO15054 1643 aa7.31□□□□□ -1.24
ATG4A-204ENST00000372246 BMP2KQ9NSY1 1161 aaPredicted RBP7.31□□□□□ -1.24
ATG4A-204ENST00000372246 MPHOSPH9Q99550 1183 aa7.3□□□□□ -1.24
ATG4A-204ENST00000372246 NUDCQ9Y266 331 aa7.3□□□□□ -1.24
ATG4A-204ENST00000372246 CHRM1P11229 460 aaPredicted RBP7.29□□□□□ -1.24
ATG4A-204ENST00000372246 CDCA7LQ96GN5 454 aa7.29□□□□□ -1.24
ATG4A-204ENST00000372246 PTPN23Q9H3S7 1636 aa7.29□□□□□ -1.24
ATG4A-204ENST00000372246 RAD54L2Q9Y4B4 1467 aa7.29□□□□□ -1.24
ATG4A-204ENST00000372246 TIE1P35590 1138 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms