RNA–Protein interactions for RNA: ENST00000361716.7

VAMP1-201, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 1 (best) BASIC

Gene VAMP1, Length 3,449 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-201ENST00000361716 SKAP1Q86WV1 359 aa16.95■□□□□ 0.3
VAMP1-201ENST00000361716 PBRM1Q86U86 1689 aa16.95■□□□□ 0.3
VAMP1-201ENST00000361716 PRKRIP1Q9H875 184 aaPredicted RBP16.95■□□□□ 0.3
VAMP1-201ENST00000361716 LRRC9Q6ZRR7 1453 aa16.95■□□□□ 0.3
VAMP1-201ENST00000361716 SLC4A1APQ9BWU0 796 aaKnown RBP16.95■□□□□ 0.3
VAMP1-201ENST00000361716 PPM1GO15355 546 aaPredicted RBP16.93■□□□□ 0.3
VAMP1-201ENST00000361716 TMC1Q8TDI8 760 aa16.93■□□□□ 0.3
VAMP1-201ENST00000361716 ZBED9Q6R2W3 1325 aa16.93■□□□□ 0.3
VAMP1-201ENST00000361716 C11orf95C9JLR9 678 aaPredicted RBP16.93■□□□□ 0.3
VAMP1-201ENST00000361716 THOC2Q8NI27 1593 aaKnown RBP16.92■□□□□ 0.3
VAMP1-201ENST00000361716 GSE1Q14687 1217 aa16.92■□□□□ 0.3
VAMP1-201ENST00000361716 PDE4AP27815 886 aa16.92■□□□□ 0.3
VAMP1-201ENST00000361716 FHAD1B1AJZ9 1412 aa16.91■□□□□ 0.3
VAMP1-201ENST00000361716 FRAT1Q92837 279 aaPredicted RBP16.9■□□□□ 0.3
VAMP1-201ENST00000361716 EXOC6Q8TAG9 804 aa16.89■□□□□ 0.29
VAMP1-201ENST00000361716 MPHOSPH9Q99550 1183 aa16.88■□□□□ 0.29
VAMP1-201ENST00000361716 NUDCQ9Y266 331 aa16.87■□□□□ 0.29
VAMP1-201ENST00000361716 CCDC18Q5T9S5 1454 aa16.87■□□□□ 0.29
VAMP1-201ENST00000361716 PKNOX2Q96KN3 472 aa16.86■□□□□ 0.29
VAMP1-201ENST00000361716 SNAPC4Q5SXM2 1469 aa16.85■□□□□ 0.29
VAMP1-201ENST00000361716 SAMD9Q5K651 1589 aa16.85■□□□□ 0.29
VAMP1-201ENST00000361716 NFKBIBQ15653 356 aa16.84■□□□□ 0.29
VAMP1-201ENST00000361716 MAP3K1Q13233 1512 aa16.84■□□□□ 0.29
VAMP1-201ENST00000361716 USP35Q9P2H5 1018 aa16.84■□□□□ 0.29
VAMP1-201ENST00000361716 EFCAB5A4FU69 1503 aa16.83■□□□□ 0.28
VAMP1-201ENST00000361716 ADAMTS12P58397 1594 aa16.82■□□□□ 0.28
VAMP1-201ENST00000361716 TIAM1Q13009 1591 aa16.82■□□□□ 0.28
VAMP1-201ENST00000361716 VSIG10Q8N0Z9 540 aa16.82■□□□□ 0.28
VAMP1-201ENST00000361716 IFT140Q96RY7 1462 aa16.8■□□□□ 0.28
VAMP1-201ENST00000361716 ARID4BQ4LE39 1312 aaPredicted RBP16.8■□□□□ 0.28
VAMP1-201ENST00000361716 CFAP43Q8NDM7 1665 aa16.8■□□□□ 0.28
VAMP1-201ENST00000361716 GRIN2BQ13224 1484 aa16.79■□□□□ 0.28
VAMP1-201ENST00000361716 PLIN1O60240 522 aa16.79■□□□□ 0.28
VAMP1-201ENST00000361716 NBPF8Q3BBV2 869 aa16.79■□□□□ 0.28
VAMP1-201ENST00000361716 TCERG1O14776 1098 aaKnown RBP16.79■□□□□ 0.28
VAMP1-201ENST00000361716 FGD6Q6ZV73 1430 aa16.78■□□□□ 0.28
VAMP1-201ENST00000361716 LRRIQ1Q96JM4 1722 aa16.76■□□□□ 0.27
VAMP1-201ENST00000361716 NAP1L5Q96NT1 182 aaPredicted RBP16.76■□□□□ 0.27
VAMP1-201ENST00000361716 PCF11O94913 1555 aaKnown RBP16.76■□□□□ 0.27
VAMP1-201ENST00000361716 PTPRKQ15262 1439 aa16.75■□□□□ 0.27
VAMP1-201ENST00000361716 ZNF644Q9H582 1327 aaPredicted RBP16.75■□□□□ 0.27
VAMP1-201ENST00000361716 GLIPR1L2Q4G1C9 344 aa16.75■□□□□ 0.27
VAMP1-201ENST00000361716 EIF4G3O43432 1585 aaKnown RBP16.75■□□□□ 0.27
VAMP1-201ENST00000361716 FRAT2O75474 233 aaPredicted RBP16.75■□□□□ 0.27
VAMP1-201ENST00000361716 RGL3Q3MIN7 710 aa16.75■□□□□ 0.27
VAMP1-201ENST00000361716 DDRGK1Q96HY6 314 aa16.75■□□□□ 0.27
VAMP1-201ENST00000361716 BACH2Q9BYV9 841 aa16.74■□□□□ 0.27
VAMP1-201ENST00000361716 KIF7Q2M1P5 1343 aa16.74■□□□□ 0.27
VAMP1-201ENST00000361716 FMN1Q68DA7 1419 aa16.74■□□□□ 0.27
VAMP1-201ENST00000361716 CNTLNQ9NXG0 1405 aa16.73■□□□□ 0.27
VAMP1-201ENST00000361716 JPH4Q96JJ6 628 aa16.73■□□□□ 0.27
VAMP1-201ENST00000361716 WASHC2CQ9Y4E1 1318 aa16.73■□□□□ 0.27
VAMP1-201ENST00000361716 RSPH6AQ9H0K4 717 aa16.72■□□□□ 0.27
VAMP1-201ENST00000361716 UACAQ9BZF9 1416 aa16.72■□□□□ 0.27
VAMP1-201ENST00000361716 RGS3P49796 1198 aa16.72■□□□□ 0.27
VAMP1-201ENST00000361716 CARD11Q9BXL7 1154 aa16.71■□□□□ 0.27
VAMP1-201ENST00000361716 CCDC7Q96M83 1385 aa16.71■□□□□ 0.27
VAMP1-201ENST00000361716 RCAN3Q9UKA8 241 aa16.7■□□□□ 0.26
VAMP1-201ENST00000361716 RRP1P56182 461 aaKnown RBP16.7■□□□□ 0.26
VAMP1-201ENST00000361716 CC2D1BQ5T0F9 858 aaKnown RBP16.68■□□□□ 0.26
VAMP1-201ENST00000361716 FYCO1Q9BQS8 1478 aa16.68■□□□□ 0.26
VAMP1-201ENST00000361716 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.67■□□□□ 0.26
VAMP1-201ENST00000361716 NAIPQ13075 1403 aa16.66■□□□□ 0.26
VAMP1-201ENST00000361716 PKD2Q13563 968 aa16.66■□□□□ 0.26
VAMP1-201ENST00000361716 SMG6Q86US8 1419 aaKnown RBP16.66■□□□□ 0.26
VAMP1-201ENST00000361716 CASKIN1Q8WXD9 1431 aa16.66■□□□□ 0.26
VAMP1-201ENST00000361716 DCAF11Q8TEB1 546 aa16.66■□□□□ 0.26
VAMP1-201ENST00000361716 SLKQ9H2G2 1235 aaPredicted RBP16.64■□□□□ 0.25
VAMP1-201ENST00000361716 IQGAP2Q13576 1575 aa16.64■□□□□ 0.25
VAMP1-201ENST00000361716 GRIN2AQ12879 1464 aa16.63■□□□□ 0.25
VAMP1-201ENST00000361716 NCOA2Q15596 1464 aa16.62■□□□□ 0.25
VAMP1-201ENST00000361716 CFDP1Q9UEE9 299 aaPredicted RBP16.62■□□□□ 0.25
VAMP1-201ENST00000361716 ZMYND15Q9H091 742 aa16.62■□□□□ 0.25
VAMP1-201ENST00000361716 GZF1Q9H116 711 aaPredicted RBP16.62■□□□□ 0.25
VAMP1-201ENST00000361716 UGGT2Q9NYU1 1516 aa16.62■□□□□ 0.25
VAMP1-201ENST00000361716 CDCA7LQ96GN5 454 aa16.61■□□□□ 0.25
VAMP1-201ENST00000361716 HFM1A2PYH4 1435 aa16.61■□□□□ 0.25
VAMP1-201ENST00000361716 CRBNQ96SW2 442 aa16.61■□□□□ 0.25
VAMP1-201ENST00000361716 ST20-MTHFSA0A0A6YYL1 179 aa16.6■□□□□ 0.25
VAMP1-201ENST00000361716 SPRYD3Q8NCJ5 442 aa16.6■□□□□ 0.25
VAMP1-201ENST00000361716 MYOM3Q5VTT5 1437 aa16.59■□□□□ 0.25
VAMP1-201ENST00000361716 FAM43AQ8N2R8 423 aa16.59■□□□□ 0.25
VAMP1-201ENST00000361716 POGKQ9P215 609 aa16.58■□□□□ 0.24
VAMP1-201ENST00000361716 MAGI1Q96QZ7 1491 aaPredicted RBP16.58■□□□□ 0.24
VAMP1-201ENST00000361716 HSP90AA2PQ14568 343 aaPredicted RBP16.57■□□□□ 0.24
VAMP1-201ENST00000361716 CDK13Q14004 1512 aaKnown RBP16.57■□□□□ 0.24
VAMP1-201ENST00000361716 MS4A1P11836 297 aa16.56■□□□□ 0.24
VAMP1-201ENST00000361716 SYNJ2O15056 1496 aa16.55■□□□□ 0.24
VAMP1-201ENST00000361716 PNNQ9H307 717 aaKnown RBP16.55■□□□□ 0.24
VAMP1-201ENST00000361716 CEP170Q5SW79 1584 aa16.55■□□□□ 0.24
VAMP1-201ENST00000361716 PNISRQ8TF01 805 aaKnown RBP16.54■□□□□ 0.24
VAMP1-201ENST00000361716 USP47Q96K76 1375 aa16.54■□□□□ 0.24
VAMP1-201ENST00000361716 PLB1Q6P1J6 1458 aa16.54■□□□□ 0.24
VAMP1-201ENST00000361716 RRAGDQ9NQL2 400 aaPredicted RBP16.54■□□□□ 0.24
VAMP1-201ENST00000361716 DISP1Q96F81 1524 aa16.53■□□□□ 0.24
VAMP1-201ENST00000361716 HSP90AA1P07900 732 aaKnown RBP16.53■□□□□ 0.24
VAMP1-201ENST00000361716 KIAA0586Q9BVV6 1533 aa16.53■□□□□ 0.24
VAMP1-201ENST00000361716 KIAA0556O60303 1618 aa16.52■□□□□ 0.23
VAMP1-201ENST00000361716 ARHGEF11O15085 1522 aa16.51■□□□□ 0.23
VAMP1-201ENST00000361716 PRG4Q92954 1404 aaPredicted RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms