RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 MIA2Q96PC5 1412 aa29.14■■■□□ 2.26
CHMP4A-201ENST00000347519 CD109Q6YHK3 1445 aa29.13■■■□□ 2.25
CHMP4A-201ENST00000347519 CFDP1Q9UEE9 299 aaPredicted RBP29.13■■■□□ 2.25
CHMP4A-201ENST00000347519 ARHGAP5Q13017 1502 aa29.11■■■□□ 2.25
CHMP4A-201ENST00000347519 ZNF644Q9H582 1327 aaPredicted RBP29.11■■■□□ 2.25
CHMP4A-201ENST00000347519 TCOF1Q13428 1488 aaKnown RBP29.09■■■□□ 2.25
CHMP4A-201ENST00000347519 ARAP3Q8WWN8 1544 aa29.09■■■□□ 2.25
CHMP4A-201ENST00000347519 SAMD9LQ8IVG5 1584 aa29.08■■■□□ 2.25
CHMP4A-201ENST00000347519 TRIM26Q12899 539 aaPredicted RBP29.08■■■□□ 2.25
CHMP4A-201ENST00000347519 TSPOAP1O95153 1857 aa29.07■■■□□ 2.24
CHMP4A-201ENST00000347519 ZNF777Q9ULD5 760 aaPredicted RBP29.07■■■□□ 2.24
CHMP4A-201ENST00000347519 PPRC1Q5VV67 1664 aaKnown RBP29.06■■■□□ 2.24
CHMP4A-201ENST00000347519 CAMSAP2Q08AD1 1489 aa29.06■■■□□ 2.24
CHMP4A-201ENST00000347519 FAM50AQ14320 339 aaKnown RBP29.05■■■□□ 2.24
CHMP4A-201ENST00000347519 FANCAO15360 1455 aa29.02■■■□□ 2.24
CHMP4A-201ENST00000347519 EFCAB2Q5VUJ9 269 aa29.01■■■□□ 2.24
CHMP4A-201ENST00000347519 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.99■■■□□ 2.23
CHMP4A-201ENST00000347519 ARHGEF12Q9NZN5 1544 aa28.96■■■□□ 2.23
CHMP4A-201ENST00000347519 ABCC1P33527 1531 aa28.95■■■□□ 2.22
CHMP4A-201ENST00000347519 SYCP2Q9BX26 1530 aa28.94■■■□□ 2.22
CHMP4A-201ENST00000347519 CFAP74Q9C0B2 1584 aa28.94■■■□□ 2.22
CHMP4A-201ENST00000347519 AKNAQ7Z591 1439 aa28.93■■■□□ 2.22
CHMP4A-201ENST00000347519 HNRNPMP52272 730 aaKnown RBP eCLIP28.92■■■□□ 2.22
CHMP4A-201ENST00000347519 MBD5Q9P267 1494 aa28.92■■■□□ 2.22
CHMP4A-201ENST00000347519 ITGAEP38570 1179 aa28.91■■■□□ 2.22
CHMP4A-201ENST00000347519 DNMT1P26358 1616 aaKnown RBP28.91■■■□□ 2.22
CHMP4A-201ENST00000347519 NEO1Q92859 1461 aa28.9■■■□□ 2.22
CHMP4A-201ENST00000347519 PCGF6Q9BYE7 350 aa28.9■■■□□ 2.22
CHMP4A-201ENST00000347519 PTPRKQ15262 1439 aa28.9■■■□□ 2.22
CHMP4A-201ENST00000347519 KIAA1107Q9UPP5 1409 aa28.89■■■□□ 2.22
CHMP4A-201ENST00000347519 PLEKHH2Q8IVE3 1493 aa28.89■■■□□ 2.21
CHMP4A-201ENST00000347519 ABCC5O15440 1437 aa28.88■■■□□ 2.21
CHMP4A-201ENST00000347519 ADGRL1O94910 1474 aa28.88■■■□□ 2.21
CHMP4A-201ENST00000347519 ARHGEF5Q12774 1597 aa28.87■■■□□ 2.21
CHMP4A-201ENST00000347519 DAPK1P53355 1430 aa28.86■■■□□ 2.21
CHMP4A-201ENST00000347519 TEX14Q8IWB6 1497 aa28.86■■■□□ 2.21
CHMP4A-201ENST00000347519 CROCC2H7BZ55 1655 aa28.85■■■□□ 2.21
CHMP4A-201ENST00000347519 SCAPERQ9BY12 1400 aa28.85■■■□□ 2.21
CHMP4A-201ENST00000347519 TRAPPC8Q9Y2L5 1435 aa28.85■■■□□ 2.21
CHMP4A-201ENST00000347519 CCDC141Q6ZP82 1450 aa28.8■■■□□ 2.2
CHMP4A-201ENST00000347519 AFAP1Q8N556 730 aa28.76■■■□□ 2.2
CHMP4A-201ENST00000347519 CHIC2Q9UKJ5 165 aa28.76■■■□□ 2.2
CHMP4A-201ENST00000347519 RICTORQ6R327 1708 aa28.74■■■□□ 2.19
CHMP4A-201ENST00000347519 POGZQ7Z3K3 1410 aa28.74■■■□□ 2.19
CHMP4A-201ENST00000347519 DENND4BO75064 1496 aaPredicted RBP28.74■■■□□ 2.19
CHMP4A-201ENST00000347519 COL17A1Q9UMD9 1497 aaPredicted RBP28.73■■■□□ 2.19
CHMP4A-201ENST00000347519 SHANK2Q9UPX8 1470 aa28.73■■■□□ 2.19
CHMP4A-201ENST00000347519 RSPH4AQ5TD94 716 aa28.73■■■□□ 2.19
CHMP4A-201ENST00000347519 FRMPD1Q5SYB0 1578 aa28.72■■■□□ 2.19
CHMP4A-201ENST00000347519 C9orf84Q5VXU9 1444 aa28.71■■■□□ 2.19
CHMP4A-201ENST00000347519 MAST1Q9Y2H9 1570 aa28.71■■■□□ 2.19
CHMP4A-201ENST00000347519 RAPGEF3O95398 923 aa28.71■■■□□ 2.19
CHMP4A-201ENST00000347519 ADGBQ8N7X0 1667 aa28.71■■■□□ 2.19
CHMP4A-201ENST00000347519 AEBP2Q6ZN18 517 aaPredicted RBP28.7■■■□□ 2.18
CHMP4A-201ENST00000347519 ZNF518AQ6AHZ1 1483 aa28.69■■■□□ 2.18
CHMP4A-201ENST00000347519 KDM5CP41229 1560 aa28.68■■■□□ 2.18
CHMP4A-201ENST00000347519 TSPY4P0CV99 314 aa28.67■■■□□ 2.18
CHMP4A-201ENST00000347519 TSPY10P0CW01 314 aa28.67■■■□□ 2.18
CHMP4A-201ENST00000347519 ADGRL2O95490 1459 aa28.66■■■□□ 2.18
CHMP4A-201ENST00000347519 INO80Q9ULG1 1556 aaPredicted RBP28.65■■■□□ 2.18
CHMP4A-201ENST00000347519 ZFYVE16Q7Z3T8 1539 aa28.65■■■□□ 2.18
CHMP4A-201ENST00000347519 RRP7BPQ9NSQ0 103 aa28.64■■■□□ 2.18
CHMP4A-201ENST00000347519 SPAG9O60271 1321 aaKnown RBP28.64■■■□□ 2.18
CHMP4A-201ENST00000347519 KIDINS220Q9ULH0 1771 aa28.63■■■□□ 2.17
CHMP4A-201ENST00000347519 ROCK1Q13464 1354 aa28.62■■■□□ 2.17
CHMP4A-201ENST00000347519 NCOA1Q15788 1441 aa28.62■■■□□ 2.17
CHMP4A-201ENST00000347519 ATP7AQ04656 1500 aa28.61■■■□□ 2.17
CHMP4A-201ENST00000347519 HECW2Q9P2P5 1572 aa28.59■■■□□ 2.17
CHMP4A-201ENST00000347519 RTEL1-TNFRSF6BF6WH68 1400 aa28.59■■■□□ 2.17
CHMP4A-201ENST00000347519 NAIPQ13075 1403 aa28.59■■■□□ 2.17
CHMP4A-201ENST00000347519 GCC2Q8IWJ2 1684 aa28.59■■■□□ 2.17
CHMP4A-201ENST00000347519 ANKRD30AQ9BXX3 1397 aa28.58■■■□□ 2.17
CHMP4A-201ENST00000347519 PLXNC1O60486 1568 aa28.58■■■□□ 2.17
CHMP4A-201ENST00000347519 ZMYM4Q5VZL5 1548 aa28.58■■■□□ 2.17
CHMP4A-201ENST00000347519 MLH3Q9UHC1 1453 aa28.57■■■□□ 2.16
CHMP4A-201ENST00000347519 HFM1A2PYH4 1435 aa28.57■■■□□ 2.16
CHMP4A-201ENST00000347519 KDM6BO15054 1643 aa28.56■■■□□ 2.16
CHMP4A-201ENST00000347519 KIF15Q9NS87 1388 aa28.53■■■□□ 2.16
CHMP4A-201ENST00000347519 ABCA6Q8N139 1617 aa28.53■■■□□ 2.16
CHMP4A-201ENST00000347519 SETD5Q9C0A6 1442 aa28.52■■■□□ 2.16
CHMP4A-201ENST00000347519 MYT1LQ9UL68 1186 aa28.52■■■□□ 2.16
CHMP4A-201ENST00000347519 YEATS2Q9ULM3 1422 aa28.51■■■□□ 2.15
CHMP4A-201ENST00000347519 DIP2CQ9Y2E4 1556 aa28.49■■■□□ 2.15
CHMP4A-201ENST00000347519 RAB3GAP2Q9H2M9 1393 aa28.48■■■□□ 2.15
CHMP4A-201ENST00000347519 DUOX2Q9NRD8 1548 aa28.45■■■□□ 2.15
CHMP4A-201ENST00000347519 MAGI2Q86UL8 1455 aa28.45■■■□□ 2.14
CHMP4A-201ENST00000347519 ANKRD50Q9ULJ7 1429 aa28.43■■■□□ 2.14
CHMP4A-201ENST00000347519 A2MP01023 1474 aa28.4■■■□□ 2.14
CHMP4A-201ENST00000347519 ARHGEF40Q8TER5 1519 aa28.4■■■□□ 2.14
CHMP4A-201ENST00000347519 DHX29Q7Z478 1369 aaKnown RBP28.38■■■□□ 2.13
CHMP4A-201ENST00000347519 ERBINQ96RT1 1412 aa28.36■■■□□ 2.13
CHMP4A-201ENST00000347519 ATP10AO60312 1499 aa28.35■■■□□ 2.13
CHMP4A-201ENST00000347519 SIGLEC1Q9BZZ2 1709 aa28.35■■■□□ 2.13
CHMP4A-201ENST00000347519 HRCP23327 699 aa28.32■■■□□ 2.12
CHMP4A-201ENST00000347519 EIF2AK4Q9P2K8 1649 aaKnown RBP28.31■■■□□ 2.12
CHMP4A-201ENST00000347519 REREQ9P2R6 1566 aa28.3■■■□□ 2.12
CHMP4A-201ENST00000347519 UNC13BO14795 1591 aa28.27■■■□□ 2.12
CHMP4A-201ENST00000347519 BCORL1Q5H9F3 1711 aa28.26■■■□□ 2.12
CHMP4A-201ENST00000347519 KIF3BO15066 747 aa28.25■■■□□ 2.11
CHMP4A-201ENST00000347519 DEPDC5O75140 1603 aa28.24■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms