RNA–Protein interactions for RNA: ENST00000344063.6

RPL28-201, Transcript of ribosomal protein L28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPL28, Length 4,796 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-201ENST00000344063 STAG3Q9UJ98 1225 aa14.17□□□□□ -0.14
RPL28-201ENST00000344063 CC2D1BQ5T0F9 858 aaKnown RBP14.17□□□□□ -0.14
RPL28-201ENST00000344063 UACAQ9BZF9 1416 aa14.16□□□□□ -0.14
RPL28-201ENST00000344063 NUP155O75694 1391 aa14.16□□□□□ -0.14
RPL28-201ENST00000344063 NUDCQ9Y266 331 aa14.16□□□□□ -0.14
RPL28-201ENST00000344063 ERCC6Q03468 1493 aa14.16□□□□□ -0.14
RPL28-201ENST00000344063 PRKCSHP14314 528 aaPredicted RBP14.16□□□□□ -0.14
RPL28-201ENST00000344063 CFTRP13569 1480 aa14.16□□□□□ -0.14
RPL28-201ENST00000344063 KTN1Q86UP2 1357 aaKnown RBP14.16□□□□□ -0.14
RPL28-201ENST00000344063 ROCK2O75116 1388 aaKnown RBP14.16□□□□□ -0.14
RPL28-201ENST00000344063 MSH5O43196 834 aa14.15□□□□□ -0.14
RPL28-201ENST00000344063 SLC4A3P48751 1232 aa14.15□□□□□ -0.14
RPL28-201ENST00000344063 CFAP53Q96M91 514 aa14.15□□□□□ -0.14
RPL28-201ENST00000344063 PRKRIP1Q9H875 184 aaPredicted RBP14.15□□□□□ -0.14
RPL28-201ENST00000344063 CASKIN1Q8WXD9 1431 aa14.14□□□□□ -0.15
RPL28-201ENST00000344063 SPRYD3Q8NCJ5 442 aa14.14□□□□□ -0.15
RPL28-201ENST00000344063 MYOM3Q5VTT5 1437 aa14.14□□□□□ -0.15
RPL28-201ENST00000344063 CUX1P39880 1505 aa14.14□□□□□ -0.15
RPL28-201ENST00000344063 IL27Q8NEV9 243 aa14.12□□□□□ -0.15
RPL28-201ENST00000344063 PAK3O75914 559 aaPredicted RBP14.11□□□□□ -0.15
RPL28-201ENST00000344063 RCAN3Q9UKA8 241 aa14.11□□□□□ -0.15
RPL28-201ENST00000344063 ZBED9Q6R2W3 1325 aa14.11□□□□□ -0.15
RPL28-201ENST00000344063 FYCO1Q9BQS8 1478 aa14.1□□□□□ -0.15
RPL28-201ENST00000344063 SLKQ9H2G2 1235 aaPredicted RBP14.1□□□□□ -0.15
RPL28-201ENST00000344063 RAD54L2Q9Y4B4 1467 aa14.09□□□□□ -0.15
RPL28-201ENST00000344063 TCERG1O14776 1098 aaKnown RBP14.09□□□□□ -0.15
RPL28-201ENST00000344063 GZF1Q9H116 711 aaPredicted RBP14.09□□□□□ -0.15
RPL28-201ENST00000344063 HMGXB3Q12766 1538 aa14.08□□□□□ -0.15
RPL28-201ENST00000344063 NLRP13Q86W25 1043 aa14.08□□□□□ -0.16
RPL28-201ENST00000344063 GAPVD1Q14C86 1478 aa14.08□□□□□ -0.16
RPL28-201ENST00000344063 PDE3BQ13370 1112 aa14.07□□□□□ -0.16
RPL28-201ENST00000344063 TIAM1Q13009 1591 aa14.07□□□□□ -0.16
RPL28-201ENST00000344063 NEUROD2Q15784 382 aa14.07□□□□□ -0.16
RPL28-201ENST00000344063 NCLP19338 710 aaKnown RBP14.06□□□□□ -0.16
RPL28-201ENST00000344063 RSPH4AQ5TD94 716 aa14.06□□□□□ -0.16
RPL28-201ENST00000344063 KIF15Q9NS87 1388 aa14.06□□□□□ -0.16
RPL28-201ENST00000344063 FRAT1Q92837 279 aaPredicted RBP14.05□□□□□ -0.16
RPL28-201ENST00000344063 EFCAB5A4FU69 1503 aa14.05□□□□□ -0.16
RPL28-201ENST00000344063 NCOA2Q15596 1464 aa14.04□□□□□ -0.16
RPL28-201ENST00000344063 PDE4AP27815 886 aa14.04□□□□□ -0.16
RPL28-201ENST00000344063 PLPPR3Q6T4P5 718 aa14.04□□□□□ -0.16
RPL28-201ENST00000344063 MYH16Q9H6N6 1097 aa14.04□□□□□ -0.16
RPL28-201ENST00000344063 KANK1Q14678 1352 aa14.04□□□□□ -0.16
RPL28-201ENST00000344063 CCDC7Q96M83 1385 aa14.03□□□□□ -0.16
RPL28-201ENST00000344063 USP47Q96K76 1375 aa14.02□□□□□ -0.16
RPL28-201ENST00000344063 MYBBP1AQ9BQG0 1328 aaKnown RBP14.02□□□□□ -0.16
RPL28-201ENST00000344063 FTSJ3Q8IY81 847 aaKnown RBP14.02□□□□□ -0.16
RPL28-201ENST00000344063 EXOC6Q8TAG9 804 aa14.02□□□□□ -0.16
RPL28-201ENST00000344063 CNTLNQ9NXG0 1405 aa14.02□□□□□ -0.17
RPL28-201ENST00000344063 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.02□□□□□ -0.17
RPL28-201ENST00000344063 PEG3Q9GZU2 1588 aa14.02□□□□□ -0.17
RPL28-201ENST00000344063 GSE1Q14687 1217 aa14.01□□□□□ -0.17
RPL28-201ENST00000344063 ARID3AQ99856 593 aa14.01□□□□□ -0.17
RPL28-201ENST00000344063 MS4A1P11836 297 aa14.01□□□□□ -0.17
RPL28-201ENST00000344063 PNNQ9H307 717 aaKnown RBP14.01□□□□□ -0.17
RPL28-201ENST00000344063 ST20-MTHFSA0A0A6YYL1 179 aa14□□□□□ -0.17
RPL28-201ENST00000344063 PLIN1O60240 522 aa14□□□□□ -0.17
RPL28-201ENST00000344063 TPRNQ4KMQ1 711 aa14□□□□□ -0.17
RPL28-201ENST00000344063 BICRAQ9NZM4 1560 aa13.99□□□□□ -0.17
RPL28-201ENST00000344063 JPH4Q96JJ6 628 aa13.99□□□□□ -0.17
RPL28-201ENST00000344063 HFM1A2PYH4 1435 aa13.99□□□□□ -0.17
RPL28-201ENST00000344063 WASHC2AQ641Q2 1341 aa13.99□□□□□ -0.17
RPL28-201ENST00000344063 HNRNPMP52272 730 aaKnown RBP eCLIP13.99□□□□□ -0.175e-6■■■■□ 20.3
RPL28-201ENST00000344063 BRPF3Q9ULD4 1205 aa13.99□□□□□ -0.17
RPL28-201ENST00000344063 MAPK8IP3Q9UPT6 1336 aa13.99□□□□□ -0.17
RPL28-201ENST00000344063 EFCAB2Q5VUJ9 269 aa13.98□□□□□ -0.17
RPL28-201ENST00000344063 L1TD1Q5T7N2 865 aaKnown RBP13.98□□□□□ -0.17
RPL28-201ENST00000344063 MAP3K1Q13233 1512 aa13.98□□□□□ -0.17
RPL28-201ENST00000344063 KIF7Q2M1P5 1343 aa13.97□□□□□ -0.17
RPL28-201ENST00000344063 USP35Q9P2H5 1018 aa13.97□□□□□ -0.17
RPL28-201ENST00000344063 VSIG10Q8N0Z9 540 aa13.96□□□□□ -0.17
RPL28-201ENST00000344063 SENP3Q9H4L4 574 aaPredicted RBP13.96□□□□□ -0.17
RPL28-201ENST00000344063 WDR97A6NE52 1622 aa13.96□□□□□ -0.18
RPL28-201ENST00000344063 CCDC144AA2RUR9 1427 aa13.95□□□□□ -0.18
RPL28-201ENST00000344063 TNNT2P45379 298 aaPredicted RBP13.95□□□□□ -0.18
RPL28-201ENST00000344063 ZBTB7CA1YPR0 619 aa13.94□□□□□ -0.18
RPL28-201ENST00000344063 GOLGA6L22H0YM25 854 aa13.94□□□□□ -0.18
RPL28-201ENST00000344063 MORC1Q86VD1 984 aa13.94□□□□□ -0.18
RPL28-201ENST00000344063 DNTTIP2Q5QJE6 756 aaKnown RBP13.94□□□□□ -0.18
RPL28-201ENST00000344063 GOLGA2Q08379 1002 aa13.93□□□□□ -0.18
RPL28-201ENST00000344063 EHBP1L1Q8N3D4 1523 aa13.93□□□□□ -0.18
RPL28-201ENST00000344063 PTMAP06454 111 aaKnown RBP13.93□□□□□ -0.18
RPL28-201ENST00000344063 CHMP4BQ9H444 224 aaKnown RBP13.93□□□□□ -0.18
RPL28-201ENST00000344063 EIF3AQ14152 1382 aaKnown RBP13.92□□□□□ -0.18
RPL28-201ENST00000344063 RRP1P56182 461 aaKnown RBP13.92□□□□□ -0.18
RPL28-201ENST00000344063 MIA2Q96PC5 1412 aa13.91□□□□□ -0.18
RPL28-201ENST00000344063 ZNF644Q9H582 1327 aaPredicted RBP13.91□□□□□ -0.18
RPL28-201ENST00000344063 TOPBP1Q92547 1522 aa13.9□□□□□ -0.18
RPL28-201ENST00000344063 HSP90AB1P08238 724 aaKnown RBP13.9□□□□□ -0.18
RPL28-201ENST00000344063 POLA1P09884 1462 aaPredicted RBP13.9□□□□□ -0.18
RPL28-201ENST00000344063 U2SURPO15042 1029 aaKnown RBP13.9□□□□□ -0.19
RPL28-201ENST00000344063 CCDC184Q52MB2 194 aa13.9□□□□□ -0.19
RPL28-201ENST00000344063 POGKQ9P215 609 aa13.9□□□□□ -0.19
RPL28-201ENST00000344063 RSPH6AQ9H0K4 717 aa13.89□□□□□ -0.19
RPL28-201ENST00000344063 BIVM-ERCC5R4GMW8 1640 aa13.89□□□□□ -0.19
RPL28-201ENST00000344063 PANK3Q9H999 370 aa13.88□□□□□ -0.19
RPL28-201ENST00000344063 AQRO60306 1485 aaKnown RBP eCLIP13.88□□□□□ -0.193e-8■■■■□ 26.2
RPL28-201ENST00000344063 NFKBIBQ15653 356 aa13.88□□□□□ -0.19
RPL28-201ENST00000344063 HSP90AA2PQ14568 343 aaPredicted RBP13.88□□□□□ -0.19
RPL28-201ENST00000344063 GOLGA6L3A6NEY3 463 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms