RNA–Protein interactions for RNA: ENST00000269228.9

NPC1-201, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPC1, Length 5,157 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-201ENST00000269228 MYH16Q9H6N6 1097 aa18.06■□□□□ 0.48
NPC1-201ENST00000269228 SOX12O15370 315 aa18.06■□□□□ 0.48
NPC1-201ENST00000269228 WASHC2CQ9Y4E1 1318 aa18.06■□□□□ 0.48
NPC1-201ENST00000269228 U2SURPO15042 1029 aaKnown RBP18.06■□□□□ 0.48
NPC1-201ENST00000269228 LAS1LQ9Y4W2 734 aaKnown RBP18.05■□□□□ 0.48
NPC1-201ENST00000269228 CC2D2AQ9P2K1 1620 aa18.05■□□□□ 0.48
NPC1-201ENST00000269228 CFTRP13569 1480 aa18.02■□□□□ 0.48
NPC1-201ENST00000269228 ARXQ96QS3 562 aa18.01■□□□□ 0.47
NPC1-201ENST00000269228 ROCK2O75116 1388 aaKnown RBP18■□□□□ 0.47
NPC1-201ENST00000269228 NUTM2DQ5VT03 806 aaPredicted RBP18■□□□□ 0.47
NPC1-201ENST00000269228 L3MBTL2Q969R5 705 aa17.99■□□□□ 0.47
NPC1-201ENST00000269228 MORC1Q86VD1 984 aa17.99■□□□□ 0.47
NPC1-201ENST00000269228 SUPT16HQ9Y5B9 1047 aaKnown RBP17.96■□□□□ 0.47
NPC1-201ENST00000269228 GRIN2BQ13224 1484 aa17.93■□□□□ 0.46
NPC1-201ENST00000269228 HDGFL2Q7Z4V5 671 aaPredicted RBP17.93■□□□□ 0.46
NPC1-201ENST00000269228 FTSJ3Q8IY81 847 aaKnown RBP17.93■□□□□ 0.46
NPC1-201ENST00000269228 MRC2Q9UBG0 1479 aa17.91■□□□□ 0.46
NPC1-201ENST00000269228 HMGXB3Q12766 1538 aa17.91■□□□□ 0.46
NPC1-201ENST00000269228 FRAT1Q92837 279 aaPredicted RBP17.9■□□□□ 0.46
NPC1-201ENST00000269228 EID1Q9Y6B2 187 aa17.9■□□□□ 0.46
NPC1-201ENST00000269228 PAK3O75914 559 aaPredicted RBP17.89■□□□□ 0.46
NPC1-201ENST00000269228 SYNJ1O43426 1573 aa17.89■□□□□ 0.45
NPC1-201ENST00000269228 PNNQ9H307 717 aaKnown RBP17.89■□□□□ 0.45
NPC1-201ENST00000269228 FAM69CQ0P6D2 419 aa17.88■□□□□ 0.45
NPC1-201ENST00000269228 ZNF644Q9H582 1327 aaPredicted RBP17.87■□□□□ 0.45
NPC1-201ENST00000269228 KTN1Q86UP2 1357 aaKnown RBP17.86■□□□□ 0.45
NPC1-201ENST00000269228 TOPBP1Q92547 1522 aa17.85■□□□□ 0.45
NPC1-201ENST00000269228 CCDC144AA2RUR9 1427 aa17.84■□□□□ 0.45
NPC1-201ENST00000269228 EIF3AQ14152 1382 aaKnown RBP17.84■□□□□ 0.45
NPC1-201ENST00000269228 PRDM2Q13029 1718 aa17.84■□□□□ 0.45
NPC1-201ENST00000269228 TRAK1Q9UPV9 953 aa17.83■□□□□ 0.44
NPC1-201ENST00000269228 DNAJC5BQ9UF47 199 aa17.82■□□□□ 0.44
NPC1-201ENST00000269228 IFT140Q96RY7 1462 aa17.82■□□□□ 0.44
NPC1-201ENST00000269228 BICRAQ9NZM4 1560 aa17.81■□□□□ 0.44
NPC1-201ENST00000269228 POLA1P09884 1462 aaPredicted RBP17.81■□□□□ 0.44
NPC1-201ENST00000269228 CCER2I3L3R5 266 aa17.81■□□□□ 0.44
NPC1-201ENST00000269228 KIF21BO75037 1637 aa17.81■□□□□ 0.44
NPC1-201ENST00000269228 DHX57Q6P158 1386 aaKnown RBP17.8■□□□□ 0.44
NPC1-201ENST00000269228 MYOM3Q5VTT5 1437 aa17.8■□□□□ 0.44
NPC1-201ENST00000269228 PRG4Q92954 1404 aaPredicted RBP17.8■□□□□ 0.44
NPC1-201ENST00000269228 NUTM2FA1L443 756 aa17.8■□□□□ 0.44
NPC1-201ENST00000269228 CUX1P39880 1505 aa17.79■□□□□ 0.44
NPC1-201ENST00000269228 U2AF1L5P0DN76 240 aaPredicted RBP17.78■□□□□ 0.44
NPC1-201ENST00000269228 U2AF1Q01081 240 aaKnown RBP eCLIP17.78■□□□□ 0.44
NPC1-201ENST00000269228 FGD6Q6ZV73 1430 aa17.77■□□□□ 0.44
NPC1-201ENST00000269228 TERF2IPQ9NYB0 399 aa17.77■□□□□ 0.44
NPC1-201ENST00000269228 PHLDB1Q86UU1 1377 aa17.76■□□□□ 0.43
NPC1-201ENST00000269228 RALBP1Q15311 655 aa17.75■□□□□ 0.43
NPC1-201ENST00000269228 RTF1Q92541 710 aaKnown RBP17.75■□□□□ 0.43
NPC1-201ENST00000269228 NGDNQ8NEJ9 315 aaKnown RBP17.75■□□□□ 0.43
NPC1-201ENST00000269228 CASKIN1Q8WXD9 1431 aa17.75■□□□□ 0.43
NPC1-201ENST00000269228 ST20-MTHFSA0A0A6YYL1 179 aa17.75■□□□□ 0.43
NPC1-201ENST00000269228 CSB-PGBD3P0DP91 1061 aa17.74■□□□□ 0.43
NPC1-201ENST00000269228 TOP2BQ02880 1626 aa17.74■□□□□ 0.43
NPC1-201ENST00000269228 VGFO15240 615 aaPredicted RBP17.74■□□□□ 0.43
NPC1-201ENST00000269228 EIF5BO60841 1220 aaKnown RBP17.74■□□□□ 0.43
NPC1-201ENST00000269228 LRRC9Q6ZRR7 1453 aa17.73■□□□□ 0.43
NPC1-201ENST00000269228 NPHP1O15259 732 aa17.73■□□□□ 0.43
NPC1-201ENST00000269228 ERICH3Q5RHP9 1530 aa17.73■□□□□ 0.43
NPC1-201ENST00000269228 KIF15Q9NS87 1388 aa17.73■□□□□ 0.43
NPC1-201ENST00000269228 SNAPC4Q5SXM2 1469 aa17.72■□□□□ 0.43
NPC1-201ENST00000269228 MS4A1P11836 297 aa17.72■□□□□ 0.43
NPC1-201ENST00000269228 RGS3P49796 1198 aa17.71■□□□□ 0.43
NPC1-201ENST00000269228 ARAP1Q96P48 1450 aa17.71■□□□□ 0.43
NPC1-201ENST00000269228 AFAP1Q8N556 730 aa17.7■□□□□ 0.42
NPC1-201ENST00000269228 NCOA2Q15596 1464 aa17.7■□□□□ 0.42
NPC1-201ENST00000269228 UACAQ9BZF9 1416 aa17.7■□□□□ 0.42
NPC1-201ENST00000269228 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.7■□□□□ 0.42
NPC1-201ENST00000269228 ANP32BQ92688 251 aaKnown RBP17.7■□□□□ 0.42
NPC1-201ENST00000269228 PPP4R2Q9NY27 417 aa17.7■□□□□ 0.42
NPC1-201ENST00000269228 SYNJ2O15056 1496 aa17.69■□□□□ 0.42
NPC1-201ENST00000269228 CHMP4BQ9H444 224 aaKnown RBP17.69■□□□□ 0.42
NPC1-201ENST00000269228 DNMBPQ6XZF7 1577 aa17.69■□□□□ 0.42
NPC1-201ENST00000269228 OS9Q13438 667 aaPredicted RBP17.68■□□□□ 0.42
NPC1-201ENST00000269228 PRXQ9BXM0 1461 aa17.67■□□□□ 0.42
NPC1-201ENST00000269228 NBR1Q14596 966 aa17.67■□□□□ 0.42
NPC1-201ENST00000269228 FYCO1Q9BQS8 1478 aa17.66■□□□□ 0.42
NPC1-201ENST00000269228 B4GALNT3Q6L9W6 998 aa17.65■□□□□ 0.42
NPC1-201ENST00000269228 ARHGAP5Q13017 1502 aa17.64■□□□□ 0.42
NPC1-201ENST00000269228 CASC1Q6TDU7 716 aa17.64■□□□□ 0.41
NPC1-201ENST00000269228 ANKRD50Q9ULJ7 1429 aa17.64■□□□□ 0.41
NPC1-201ENST00000269228 MINK1Q8N4C8 1332 aaPredicted RBP17.64■□□□□ 0.41
NPC1-201ENST00000269228 PANK3Q9H999 370 aa17.63■□□□□ 0.41
NPC1-201ENST00000269228 BECN1Q14457 450 aa17.63■□□□□ 0.41
NPC1-201ENST00000269228 NLRP13Q86W25 1043 aa17.62■□□□□ 0.41
NPC1-201ENST00000269228 AMPHP49418 695 aa17.62■□□□□ 0.41
NPC1-201ENST00000269228 LTV1Q96GA3 475 aaPredicted RBP17.62■□□□□ 0.41
NPC1-201ENST00000269228 CCDC146Q8IYE0 955 aa17.61■□□□□ 0.41
NPC1-201ENST00000269228 USP47Q96K76 1375 aa17.6■□□□□ 0.41
NPC1-201ENST00000269228 LAMC3Q9Y6N6 1575 aa17.6■□□□□ 0.41
NPC1-201ENST00000269228 CCDC9Q9Y3X0 531 aaKnown RBP17.6■□□□□ 0.41
NPC1-201ENST00000269228 CALD1Q05682 793 aaKnown RBP17.6■□□□□ 0.41
NPC1-201ENST00000269228 EVC2Q86UK5 1308 aa17.59■□□□□ 0.41
NPC1-201ENST00000269228 DDRGK1Q96HY6 314 aa17.59■□□□□ 0.41
NPC1-201ENST00000269228 EFCAB5A4FU69 1503 aa17.59■□□□□ 0.41
NPC1-201ENST00000269228 ZNF330Q9Y3S2 320 aaPredicted RBP17.57■□□□□ 0.4
NPC1-201ENST00000269228 IPO8O15397 1037 aaKnown RBP17.56■□□□□ 0.4
NPC1-201ENST00000269228 RCAN3Q9UKA8 241 aa17.55■□□□□ 0.4
NPC1-201ENST00000269228 ABCA10Q8WWZ4 1543 aa17.54■□□□□ 0.4
NPC1-201ENST00000269228 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms