RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 ST20-MTHFSA0A0A6YYL1 179 aa6□□□□□ -1.45
VPS13C-201ENST00000249837 UNC13AQ9UPW8 1703 aa6□□□□□ -1.45
VPS13C-201ENST00000249837 ZNF644Q9H582 1327 aaPredicted RBP6□□□□□ -1.45
VPS13C-201ENST00000249837 PLIN1O60240 522 aa6□□□□□ -1.45
VPS13C-201ENST00000249837 FANCD2Q9BXW9 1451 aa6□□□□□ -1.45
VPS13C-201ENST00000249837 CCDC184Q52MB2 194 aa6□□□□□ -1.45
VPS13C-201ENST00000249837 PLPPR3Q6T4P5 718 aa6□□□□□ -1.45
VPS13C-201ENST00000249837 CCDC7Q96M83 1385 aa6□□□□□ -1.45
VPS13C-201ENST00000249837 ZBED9Q6R2W3 1325 aa6□□□□□ -1.45
VPS13C-201ENST00000249837 FGD6Q6ZV73 1430 aa6□□□□□ -1.45
VPS13C-201ENST00000249837 TMF1P82094 1093 aa6□□□□□ -1.45
VPS13C-201ENST00000249837 RALBP1Q15311 655 aa5.99□□□□□ -1.45
VPS13C-201ENST00000249837 SLC4A3P48751 1232 aa5.99□□□□□ -1.45
VPS13C-201ENST00000249837 CRBNQ96SW2 442 aa5.99□□□□□ -1.45
VPS13C-201ENST00000249837 PRDM2Q13029 1718 aa5.99□□□□□ -1.45
VPS13C-201ENST00000249837 FTSJ3Q8IY81 847 aaKnown RBP5.99□□□□□ -1.45
VPS13C-201ENST00000249837 SPRYD3Q8NCJ5 442 aa5.99□□□□□ -1.45
VPS13C-201ENST00000249837 KIF7Q2M1P5 1343 aa5.99□□□□□ -1.45
VPS13C-201ENST00000249837 HNRNPMP52272 730 aaKnown RBP eCLIP5.99□□□□□ -1.456e-6■■■■□ 20.3
VPS13C-201ENST00000249837 ROCK2O75116 1388 aaKnown RBP5.98□□□□□ -1.45
VPS13C-201ENST00000249837 CCDC146Q8IYE0 955 aa5.98□□□□□ -1.45
VPS13C-201ENST00000249837 USP47Q96K76 1375 aa5.98□□□□□ -1.45
VPS13C-201ENST00000249837 CDCA8Q53HL2 280 aa5.98□□□□□ -1.45
VPS13C-201ENST00000249837 TIAM1Q13009 1591 aa5.98□□□□□ -1.45
VPS13C-201ENST00000249837 PDE4AP27815 886 aa5.98□□□□□ -1.45
VPS13C-201ENST00000249837 UACAQ9BZF9 1416 aa5.97□□□□□ -1.45
VPS13C-201ENST00000249837 NPM1P06748 294 aaKnown RBP eCLIP5.97□□□□□ -1.45
VPS13C-201ENST00000249837 CFAP53Q96M91 514 aa5.97□□□□□ -1.45
VPS13C-201ENST00000249837 PAK3O75914 559 aaPredicted RBP5.97□□□□□ -1.45
VPS13C-201ENST00000249837 U2SURPO15042 1029 aaKnown RBP5.97□□□□□ -1.45
VPS13C-201ENST00000249837 ANKRD30AQ9BXX3 1397 aa5.97□□□□□ -1.45
VPS13C-201ENST00000249837 MORC1Q86VD1 984 aa5.97□□□□□ -1.45
VPS13C-201ENST00000249837 NBPF8Q3BBV2 869 aa5.96□□□□□ -1.45
VPS13C-201ENST00000249837 CASKIN1Q8WXD9 1431 aa5.96□□□□□ -1.45
VPS13C-201ENST00000249837 CNTLNQ9NXG0 1405 aa5.96□□□□□ -1.45
VPS13C-201ENST00000249837 ERCC6Q03468 1493 aa5.96□□□□□ -1.46
VPS13C-201ENST00000249837 NLRP13Q86W25 1043 aa5.96□□□□□ -1.46
VPS13C-201ENST00000249837 MYOM3Q5VTT5 1437 aa5.96□□□□□ -1.46
VPS13C-201ENST00000249837 MSH5O43196 834 aa5.96□□□□□ -1.46
VPS13C-201ENST00000249837 RRP1P56182 461 aaKnown RBP5.96□□□□□ -1.46
VPS13C-201ENST00000249837 PDS5BQ9NTI5 1447 aa5.95□□□□□ -1.46
VPS13C-201ENST00000249837 MYBBP1AQ9BQG0 1328 aaKnown RBP5.95□□□□□ -1.46
VPS13C-201ENST00000249837 ANP32BQ92688 251 aaKnown RBP5.95□□□□□ -1.46
VPS13C-201ENST00000249837 CFTRP13569 1480 aa5.95□□□□□ -1.46
VPS13C-201ENST00000249837 KIF15Q9NS87 1388 aa5.95□□□□□ -1.46
VPS13C-201ENST00000249837 C11orf95C9JLR9 678 aaPredicted RBP5.95□□□□□ -1.46
VPS13C-201ENST00000249837 NCOA2Q15596 1464 aa5.95□□□□□ -1.46
VPS13C-201ENST00000249837 PANK3Q9H999 370 aa5.95□□□□□ -1.46
VPS13C-201ENST00000249837 SAFB2Q14151 953 aaKnown RBP eCLIP5.95□□□□□ -1.46
VPS13C-201ENST00000249837 PLEKHG5O94827 1062 aa5.95□□□□□ -1.46
VPS13C-201ENST00000249837 BICRAQ9NZM4 1560 aa5.95□□□□□ -1.46
VPS13C-201ENST00000249837 NCLP19338 710 aaKnown RBP5.95□□□□□ -1.46
VPS13C-201ENST00000249837 SLKQ9H2G2 1235 aaPredicted RBP5.94□□□□□ -1.46
VPS13C-201ENST00000249837 AKNAQ7Z591 1439 aa5.94□□□□□ -1.46
VPS13C-201ENST00000249837 RRP7AQ9Y3A4 280 aaKnown RBP5.94□□□□□ -1.46
VPS13C-201ENST00000249837 GAPVD1Q14C86 1478 aa5.94□□□□□ -1.46
VPS13C-201ENST00000249837 NCAPD3P42695 1498 aa5.94□□□□□ -1.46
VPS13C-201ENST00000249837 HSP90AB1P08238 724 aaKnown RBP5.93□□□□□ -1.46
VPS13C-201ENST00000249837 GOLGA2Q08379 1002 aa5.93□□□□□ -1.46
VPS13C-201ENST00000249837 MYH16Q9H6N6 1097 aa5.93□□□□□ -1.46
VPS13C-201ENST00000249837 PDE3BQ13370 1112 aa5.93□□□□□ -1.46
VPS13C-201ENST00000249837 FYCO1Q9BQS8 1478 aa5.93□□□□□ -1.46
VPS13C-201ENST00000249837 TPRNQ4KMQ1 711 aa5.93□□□□□ -1.46
VPS13C-201ENST00000249837 CDCA7LQ96GN5 454 aa5.93□□□□□ -1.46
VPS13C-201ENST00000249837 NAP1L5Q96NT1 182 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-201ENST00000249837 STK26Q9P289 416 aa5.92□□□□□ -1.46
VPS13C-201ENST00000249837 NESP48681 1621 aa5.92□□□□□ -1.46
VPS13C-201ENST00000249837 JPH4Q96JJ6 628 aa5.92□□□□□ -1.46
VPS13C-201ENST00000249837 POGKQ9P215 609 aa5.92□□□□□ -1.46
VPS13C-201ENST00000249837 CARMIL2Q6F5E8 1435 aa5.92□□□□□ -1.46
VPS13C-201ENST00000249837 PCF11O94913 1555 aaKnown RBP5.92□□□□□ -1.46
VPS13C-201ENST00000249837 GZF1Q9H116 711 aaPredicted RBP5.92□□□□□ -1.46
VPS13C-201ENST00000249837 MAPK8IP3Q9UPT6 1336 aa5.91□□□□□ -1.46
VPS13C-201ENST00000249837 ESF1Q9H501 851 aaKnown RBP5.91□□□□□ -1.46
VPS13C-201ENST00000249837 U2AF1L5P0DN76 240 aaPredicted RBP5.91□□□□□ -1.46
VPS13C-201ENST00000249837 U2AF1Q01081 240 aaKnown RBP eCLIP5.91□□□□□ -1.46
VPS13C-201ENST00000249837 GLIPR1L2Q4G1C9 344 aa5.91□□□□□ -1.46
VPS13C-201ENST00000249837 CLUAP1Q96AJ1 413 aa5.91□□□□□ -1.46
VPS13C-201ENST00000249837 MS4A1P11836 297 aa5.9□□□□□ -1.46
VPS13C-201ENST00000249837 NAIPQ13075 1403 aa5.9□□□□□ -1.46
VPS13C-201ENST00000249837 PNISRQ8TF01 805 aaKnown RBP5.9□□□□□ -1.46
VPS13C-201ENST00000249837 APBB1O00213 710 aa5.9□□□□□ -1.46
VPS13C-201ENST00000249837 TRIM44Q96DX7 344 aaPredicted RBP5.9□□□□□ -1.46
VPS13C-201ENST00000249837 APAF1O14727 1248 aa5.9□□□□□ -1.46
VPS13C-201ENST00000249837 SRPK2P78362 688 aaKnown RBP5.9□□□□□ -1.46
VPS13C-201ENST00000249837 HFM1A2PYH4 1435 aa5.9□□□□□ -1.47
VPS13C-201ENST00000249837 RWDD1Q9H446 243 aaPredicted RBP5.9□□□□□ -1.47
VPS13C-201ENST00000249837 BCL2L13Q9BXK5 485 aa5.9□□□□□ -1.47
VPS13C-201ENST00000249837 ARID4BQ4LE39 1312 aaPredicted RBP5.89□□□□□ -1.47
VPS13C-201ENST00000249837 NBPF1Q3BBV0 1214 aa5.89□□□□□ -1.47
VPS13C-201ENST00000249837 COG6Q9Y2V7 657 aa5.89□□□□□ -1.47
VPS13C-201ENST00000249837 EFCAB2Q5VUJ9 269 aa5.89□□□□□ -1.47
VPS13C-201ENST00000249837 HSCBQ8IWL3 235 aa5.89□□□□□ -1.47
VPS13C-201ENST00000249837 CENPJQ9HC77 1338 aaPredicted RBP5.89□□□□□ -1.47
VPS13C-201ENST00000249837 CENPQQ7L2Z9 268 aaPredicted RBP5.89□□□□□ -1.47
VPS13C-201ENST00000249837 FOXD4L1Q9NU39 408 aa5.89□□□□□ -1.47
VPS13C-201ENST00000249837 GGT6Q6P531 493 aa5.88□□□□□ -1.47
VPS13C-201ENST00000249837 SKAP1Q86WV1 359 aa5.88□□□□□ -1.47
VPS13C-201ENST00000249837 KANK1Q14678 1352 aa5.88□□□□□ -1.47
VPS13C-201ENST00000249837 MAPKBP1O60336 1514 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms