RNA–Protein interactions for RNA: ENST00000248139.7

RAB40C-201, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB40C, Length 2,699 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-201ENST00000248139 ZNF777Q9ULD5 760 aaPredicted RBP35.74■■■■□ 3.31
RAB40C-201ENST00000248139 AKNAQ7Z591 1439 aa35.74■■■■□ 3.31
RAB40C-201ENST00000248139 C11orf95C9JLR9 678 aaPredicted RBP35.74■■■■□ 3.31
RAB40C-201ENST00000248139 PRG4Q92954 1404 aaPredicted RBP35.73■■■■□ 3.31
RAB40C-201ENST00000248139 GRIN2AQ12879 1464 aa35.72■■■■□ 3.31
RAB40C-201ENST00000248139 CHMP7Q8WUX9 453 aaPredicted RBP35.71■■■■□ 3.31
RAB40C-201ENST00000248139 SLC4A1APQ9BWU0 796 aaKnown RBP35.71■■■■□ 3.31
RAB40C-201ENST00000248139 NBPF8Q3BBV2 869 aa35.7■■■■□ 3.31
RAB40C-201ENST00000248139 EIF4G3O43432 1585 aaKnown RBP35.68■■■■□ 3.3
RAB40C-201ENST00000248139 HNRNPUQ00839 825 aaKnown RBP eCLIP35.67■■■■□ 3.3
RAB40C-201ENST00000248139 CDK11AQ9UQ88 783 aaPredicted RBP35.66■■■■□ 3.3
RAB40C-201ENST00000248139 PLB1Q6P1J6 1458 aa35.65■■■■□ 3.3
RAB40C-201ENST00000248139 RAPGEF6Q8TEU7 1601 aa35.65■■■■□ 3.3
RAB40C-201ENST00000248139 CCDC184Q52MB2 194 aa35.64■■■■□ 3.3
RAB40C-201ENST00000248139 CFDP1Q9UEE9 299 aaPredicted RBP35.64■■■■□ 3.3
RAB40C-201ENST00000248139 ANKRD30BQ9BXX2 1392 aa35.64■■■■□ 3.3
RAB40C-201ENST00000248139 NEFLP07196 543 aa35.63■■■■□ 3.29
RAB40C-201ENST00000248139 ERCC6Q03468 1493 aa35.6■■■■□ 3.29
RAB40C-201ENST00000248139 DNMT1P26358 1616 aaKnown RBP35.58■■■■□ 3.29
RAB40C-201ENST00000248139 ROCK1Q13464 1354 aa35.58■■■■□ 3.29
RAB40C-201ENST00000248139 RPRD2Q5VT52 1461 aaKnown RBP35.52■■■■□ 3.28
RAB40C-201ENST00000248139 CNGB1Q14028 1251 aaPredicted RBP35.52■■■■□ 3.28
RAB40C-201ENST00000248139 IRX6P78412 446 aaPredicted RBP35.51■■■■□ 3.28
RAB40C-201ENST00000248139 CEP170Q5SW79 1584 aa35.51■■■■□ 3.28
RAB40C-201ENST00000248139 TROQ12816 1431 aaPredicted RBP35.51■■■■□ 3.27
RAB40C-201ENST00000248139 JPH4Q96JJ6 628 aa35.5■■■■□ 3.27
RAB40C-201ENST00000248139 ZNF326Q5BKZ1 582 aaKnown RBP35.5■■■■□ 3.27
RAB40C-201ENST00000248139 CAMSAP2Q08AD1 1489 aa35.49■■■■□ 3.27
RAB40C-201ENST00000248139 KIF14Q15058 1648 aa35.47■■■■□ 3.27
RAB40C-201ENST00000248139 CCDC7Q96M83 1385 aa35.47■■■■□ 3.27
RAB40C-201ENST00000248139 TEX14Q8IWB6 1497 aa35.46■■■■□ 3.27
RAB40C-201ENST00000248139 CNTLNQ9NXG0 1405 aa35.45■■■■□ 3.27
RAB40C-201ENST00000248139 GPATCH8Q9UKJ3 1502 aaKnown RBP35.45■■■■□ 3.27
RAB40C-201ENST00000248139 FAM9BQ8IZU0 186 aa35.43■■■■□ 3.26
RAB40C-201ENST00000248139 NCOA1Q15788 1441 aa35.42■■■■□ 3.26
RAB40C-201ENST00000248139 PZPP20742 1482 aa35.41■■■■□ 3.26
RAB40C-201ENST00000248139 SYNJ2O15056 1496 aa35.4■■■■□ 3.26
RAB40C-201ENST00000248139 POLR3GLQ9BT43 218 aa35.4■■■■□ 3.26
RAB40C-201ENST00000248139 PRKRIP1Q9H875 184 aaPredicted RBP35.4■■■■□ 3.26
RAB40C-201ENST00000248139 PKD2Q13563 968 aa35.39■■■■□ 3.26
RAB40C-201ENST00000248139 KIF7Q2M1P5 1343 aa35.38■■■■□ 3.26
RAB40C-201ENST00000248139 MAGI1Q96QZ7 1491 aaPredicted RBP35.38■■■■□ 3.25
RAB40C-201ENST00000248139 MRS2Q9HD23 443 aa35.33■■■■□ 3.25
RAB40C-201ENST00000248139 CARMIL2Q6F5E8 1435 aa35.31■■■■□ 3.24
RAB40C-201ENST00000248139 PLEKHD1A6NEE1 506 aa35.31■■■■□ 3.24
RAB40C-201ENST00000248139 SPATA31E1Q6ZUB1 1445 aa35.29■■■■□ 3.24
RAB40C-201ENST00000248139 ANKRD30AQ9BXX3 1397 aa35.24■■■■□ 3.23
RAB40C-201ENST00000248139 ITSN2Q9NZM3 1697 aa35.23■■■■□ 3.23
RAB40C-201ENST00000248139 KIAA1107Q9UPP5 1409 aa35.23■■■■□ 3.23
RAB40C-201ENST00000248139 NUP160Q12769 1436 aa35.22■■■■□ 3.23
RAB40C-201ENST00000248139 HNRNPMP52272 730 aaKnown RBP eCLIP35.22■■■■□ 3.23
RAB40C-201ENST00000248139 ANKRD50Q9ULJ7 1429 aa35.21■■■■□ 3.23
RAB40C-201ENST00000248139 SENP3-EIF4A1A0A087X0R7 540 aa35.2■■■■□ 3.23
RAB40C-201ENST00000248139 ATP10BO94823 1461 aa35.19■■■■□ 3.22
RAB40C-201ENST00000248139 NUP155O75694 1391 aa35.19■■■■□ 3.22
RAB40C-201ENST00000248139 ADGBQ8N7X0 1667 aa35.17■■■■□ 3.22
RAB40C-201ENST00000248139 KDM2AQ9Y2K7 1162 aa35.17■■■■□ 3.22
RAB40C-201ENST00000248139 RBM19Q9Y4C8 960 aaKnown RBP35.15■■■■□ 3.22
RAB40C-201ENST00000248139 MYT1Q01538 1121 aa35.15■■■■□ 3.22
RAB40C-201ENST00000248139 ADGRL2O95490 1459 aa35.14■■■■□ 3.22
RAB40C-201ENST00000248139 ADCY10Q96PN6 1610 aa35.14■■■■□ 3.22
RAB40C-201ENST00000248139 USP47Q96K76 1375 aa35.14■■■■□ 3.22
RAB40C-201ENST00000248139 TSPY4P0CV99 314 aa35.11■■■■□ 3.21
RAB40C-201ENST00000248139 TSPY10P0CW01 314 aa35.11■■■■□ 3.21
RAB40C-201ENST00000248139 CROCC2H7BZ55 1655 aa35.11■■■■□ 3.21
RAB40C-201ENST00000248139 C9orf84Q5VXU9 1444 aa35.11■■■■□ 3.21
RAB40C-201ENST00000248139 CDC42BPAQ5VT25 1732 aa35.11■■■■□ 3.21
RAB40C-201ENST00000248139 ABCC10Q5T3U5 1492 aa35.08■■■■□ 3.21
RAB40C-201ENST00000248139 MBD5Q9P267 1494 aa35.08■■■■□ 3.21
RAB40C-201ENST00000248139 ABCA8O94911 1581 aa35.07■■■■□ 3.2
RAB40C-201ENST00000248139 BCORL1Q5H9F3 1711 aa35.06■■■■□ 3.2
RAB40C-201ENST00000248139 CARD11Q9BXL7 1154 aa35.01■■■■□ 3.19
RAB40C-201ENST00000248139 DHX29Q7Z478 1369 aaKnown RBP35■■■■□ 3.19
RAB40C-201ENST00000248139 KIF15Q9NS87 1388 aa35■■■■□ 3.19
RAB40C-201ENST00000248139 DCAF11Q8TEB1 546 aa34.99■■■■□ 3.19
RAB40C-201ENST00000248139 PTPRGP23470 1445 aa34.97■■■■□ 3.19
RAB40C-201ENST00000248139 ZBED9Q6R2W3 1325 aa34.97■■■■□ 3.19
RAB40C-201ENST00000248139 POLR1AO95602 1720 aaPredicted RBP34.94■■■■□ 3.18
RAB40C-201ENST00000248139 ST20-MTHFSA0A0A6YYL1 179 aa34.92■■■■□ 3.18
RAB40C-201ENST00000248139 KDM5CP41229 1560 aa34.9■■■■□ 3.18
RAB40C-201ENST00000248139 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.89■■■■□ 3.18
RAB40C-201ENST00000248139 ANP32EQ9BTT0 268 aa34.89■■■■□ 3.18
RAB40C-201ENST00000248139 RGL3Q3MIN7 710 aa34.88■■■■□ 3.17
RAB40C-201ENST00000248139 B4GALNT3Q6L9W6 998 aa34.88■■■■□ 3.17
RAB40C-201ENST00000248139 SHANK2Q9UPX8 1470 aa34.86■■■■□ 3.17
RAB40C-201ENST00000248139 PPP4R2Q9NY27 417 aa34.81■■■■□ 3.16
RAB40C-201ENST00000248139 UHRF1BP1Q6BDS2 1440 aa34.8■■■■□ 3.16
RAB40C-201ENST00000248139 RALGAPBQ86X10 1494 aa34.8■■■■□ 3.16
RAB40C-201ENST00000248139 SAMD9LQ8IVG5 1584 aa34.79■■■■□ 3.16
RAB40C-201ENST00000248139 CDC42BPBQ9Y5S2 1711 aa34.75■■■■□ 3.15
RAB40C-201ENST00000248139 TMC1Q8TDI8 760 aa34.75■■■■□ 3.15
RAB40C-201ENST00000248139 CCDC141Q6ZP82 1450 aa34.74■■■■□ 3.15
RAB40C-201ENST00000248139 ROCK2O75116 1388 aaKnown RBP34.73■■■■□ 3.15
RAB40C-201ENST00000248139 NBPF1Q3BBV0 1214 aa34.73■■■■□ 3.15
RAB40C-201ENST00000248139 PNISRQ8TF01 805 aaKnown RBP34.71■■■■□ 3.15
RAB40C-201ENST00000248139 KDM5DQ9BY66 1539 aa34.71■■■■□ 3.15
RAB40C-201ENST00000248139 FAM135AQ9P2D6 1515 aa34.7■■■■□ 3.15
RAB40C-201ENST00000248139 SYCP2Q9BX26 1530 aa34.69■■■■□ 3.14
RAB40C-201ENST00000248139 ARHGEF5Q12774 1597 aa34.69■■■■□ 3.14
RAB40C-201ENST00000248139 MSH5O43196 834 aa34.69■■■■□ 3.14
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms