RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Ercc6F8VPZ5 1481 aa15.03■□□□□ -0
Trim56-201ENSMUST00000054384 Rtf1A2AQ19 715 aaKnown RBP15.03■□□□□ -0
Trim56-201ENSMUST00000054384 Cnga1P29974 684 aa15.02■□□□□ -0
Trim56-201ENSMUST00000054384 Iffo2Q8R2V2 512 aa15.02■□□□□ -0
Trim56-201ENSMUST00000054384 Slc4a3P16283 1227 aa15.02■□□□□ -0
Trim56-201ENSMUST00000054384 Rrp7aQ9D1C9 280 aaKnown RBP15.02■□□□□ -0
Trim56-201ENSMUST00000054384 R3hcc1Q8BSI6 488 aa15.01□□□□□ -0.01
Trim56-201ENSMUST00000054384 EspnQ9ET47 871 aa15.01□□□□□ -0.01
Trim56-201ENSMUST00000054384 Kif15Q6P9L6 1387 aa15□□□□□ -0.01
Trim56-201ENSMUST00000054384 Arhgap27A2AB59 869 aa15□□□□□ -0.01
Trim56-201ENSMUST00000054384 Rrp12Q6P5B0 1295 aaKnown RBP14.99□□□□□ -0.01
Trim56-201ENSMUST00000054384 Nol10Q5RJG1 687 aaKnown RBP14.99□□□□□ -0.01
Trim56-201ENSMUST00000054384 Chmp5Q9D7S9 219 aa14.99□□□□□ -0.01
Trim56-201ENSMUST00000054384 CgnP59242 1191 aa14.99□□□□□ -0.01
Trim56-201ENSMUST00000054384 MyclP10166 368 aa14.99□□□□□ -0.01
Trim56-201ENSMUST00000054384 Golga3P55937 1487 aa14.98□□□□□ -0.01
Trim56-201ENSMUST00000054384 Kiaa0754Q69ZZ9 979 aa14.98□□□□□ -0.01
Trim56-201ENSMUST00000054384 Smarce1O54941 411 aaKnown RBP14.98□□□□□ -0.01
Trim56-201ENSMUST00000054384 Baz1aO88379 1555 aa14.97□□□□□ -0.01
Trim56-201ENSMUST00000054384 U2surpQ6NV83 1029 aaKnown RBP14.97□□□□□ -0.01
Trim56-201ENSMUST00000054384 Noc3lQ8VI84 807 aaKnown RBP14.96□□□□□ -0.01
Trim56-201ENSMUST00000054384 Ipo9Q91YE6 1041 aa14.96□□□□□ -0.01
Trim56-201ENSMUST00000054384 Tmf1B9EKI3 1091 aa14.96□□□□□ -0.02
Trim56-201ENSMUST00000054384 Supt16hQ920B9 1047 aa14.96□□□□□ -0.02
Trim56-201ENSMUST00000054384 SafbD3YXK2 937 aaKnown RBP14.95□□□□□ -0.02
Trim56-201ENSMUST00000054384 MecomP14404 1042 aa14.94□□□□□ -0.02
Trim56-201ENSMUST00000054384 Map7d2A2AG50 781 aa14.93□□□□□ -0.02
Trim56-201ENSMUST00000054384 Trim30aP15533 496 aa14.92□□□□□ -0.02
Trim56-201ENSMUST00000054384 Ipo8Q7TMY7 1010 aa14.92□□□□□ -0.02
Trim56-201ENSMUST00000054384 Speer4f1Q9D5Q6 258 aa14.91□□□□□ -0.02
Trim56-201ENSMUST00000054384 Ftsj3Q9DBE9 838 aaKnown RBP14.91□□□□□ -0.02
Trim56-201ENSMUST00000054384 Tpm3P21107 285 aaKnown RBP14.91□□□□□ -0.02
Trim56-201ENSMUST00000054384 Mfap1aC0HKD8 439 aaKnown RBP14.9□□□□□ -0.02
Trim56-201ENSMUST00000054384 Mfap1bC0HKD9 439 aaKnown RBP14.9□□□□□ -0.02
Trim56-201ENSMUST00000054384 Gpatch11Q3UFS4 262 aa14.9□□□□□ -0.02
Trim56-201ENSMUST00000054384 Isy1Q69ZQ2 285 aaKnown RBP14.9□□□□□ -0.02
Trim56-201ENSMUST00000054384 Tpd52l1O54818 204 aa14.89□□□□□ -0.03
Trim56-201ENSMUST00000054384 Spag9Q58A65 1321 aaKnown RBP14.89□□□□□ -0.03
Trim56-201ENSMUST00000054384 Becn1O88597 448 aa14.88□□□□□ -0.03
Trim56-201ENSMUST00000054384 Tmco5bQ80X59 307 aa14.88□□□□□ -0.03
Trim56-201ENSMUST00000054384 NacadQ5SWP3 1504 aa14.88□□□□□ -0.03
Trim56-201ENSMUST00000054384 Plin1Q8CGN5 517 aa14.87□□□□□ -0.03
Trim56-201ENSMUST00000054384 Ddrgk1Q80WW9 315 aa14.87□□□□□ -0.03
Trim56-201ENSMUST00000054384 CrebrfQ8CDG5 640 aaKnown RBP14.86□□□□□ -0.03
Trim56-201ENSMUST00000054384 Q3TQI7 289 aaKnown RBP14.86□□□□□ -0.03
Trim56-201ENSMUST00000054384 4933402E13RikQ9D4D2 429 aa14.86□□□□□ -0.03
Trim56-201ENSMUST00000054384 Cspp1B2RX88 1205 aa14.85□□□□□ -0.03
Trim56-201ENSMUST00000054384 Taok2Q6ZQ29 1240 aa14.85□□□□□ -0.03
Trim56-201ENSMUST00000054384 Atp6v1dP57746 247 aa14.85□□□□□ -0.03
Trim56-201ENSMUST00000054384 Rundc1Q0VDN7 615 aa14.84□□□□□ -0.03
Trim56-201ENSMUST00000054384 GorabQ8BRM2 368 aa14.84□□□□□ -0.03
Trim56-201ENSMUST00000054384 Ccer1Q9CQL2 403 aa14.84□□□□□ -0.03
Trim56-201ENSMUST00000054384 VgfQ0VGU4 617 aa14.84□□□□□ -0.03
Trim56-201ENSMUST00000054384 Tpm4Q6IRU2 248 aa14.84□□□□□ -0.03
Trim56-201ENSMUST00000054384 Golga2Q921M4 999 aa14.84□□□□□ -0.03
Trim56-201ENSMUST00000054384 U2af1Q9D883 239 aaKnown RBP14.83□□□□□ -0.04
Trim56-201ENSMUST00000054384 Tnnt1O88346 262 aa14.82□□□□□ -0.04
Trim56-201ENSMUST00000054384 Ccdc47Q9D024 483 aaKnown RBP14.82□□□□□ -0.04
Trim56-201ENSMUST00000054384 Mical1Q8VDP3 1048 aa14.82□□□□□ -0.04
Trim56-201ENSMUST00000054384 Brpf1B2RRD7 1212 aa14.82□□□□□ -0.04
Trim56-201ENSMUST00000054384 Q8BT18 775 aa14.81□□□□□ -0.04
Trim56-201ENSMUST00000054384 SlkO54988 1233 aa14.81□□□□□ -0.04
Trim56-201ENSMUST00000054384 BccipQ9CWI3 316 aa14.81□□□□□ -0.04
Trim56-201ENSMUST00000054384 Zscan21Q07231 555 aa14.81□□□□□ -0.04
Trim56-201ENSMUST00000054384 Cluap1Q8R3P7 413 aa14.81□□□□□ -0.04
Trim56-201ENSMUST00000054384 Hspa5P20029 655 aaKnown RBP14.8□□□□□ -0.04
Trim56-201ENSMUST00000054384 Vps53Q8CCB4 832 aa14.8□□□□□ -0.04
Trim56-201ENSMUST00000054384 Gtf2e1Q9D0D5 440 aa14.8□□□□□ -0.04
Trim56-201ENSMUST00000054384 Prm3Q62100 101 aa14.8□□□□□ -0.04
Trim56-201ENSMUST00000054384 Znf330Q922H9 316 aa14.8□□□□□ -0.04
Trim56-201ENSMUST00000054384 Ylpm1Q9R0I7 1386 aaKnown RBP14.79□□□□□ -0.04
Trim56-201ENSMUST00000054384 Ush1cQ9ES64 910 aa14.79□□□□□ -0.04
Trim56-201ENSMUST00000054384 Rsph3aQ3UFY4 516 aa14.79□□□□□ -0.04
Trim56-201ENSMUST00000054384 Ifit1bl1D3Z6F0 470 aa14.79□□□□□ -0.04
Trim56-201ENSMUST00000054384 Chmp3Q9CQ10 224 aa14.79□□□□□ -0.04
Trim56-201ENSMUST00000054384 Tpm1P58771 284 aa14.77□□□□□ -0.04
Trim56-201ENSMUST00000054384 Tpm2P58774 284 aa14.77□□□□□ -0.04
Trim56-201ENSMUST00000054384 Stk26Q99JT2 416 aa14.77□□□□□ -0.04
Trim56-201ENSMUST00000054384 Arhgap35Q91YM2 1499 aa14.77□□□□□ -0.05
Trim56-201ENSMUST00000054384 Rock2P70336 1388 aa14.77□□□□□ -0.05
Trim56-201ENSMUST00000054384 Exoc6Q8R313 802 aa14.76□□□□□ -0.05
Trim56-201ENSMUST00000054384 Sf3a1Q8K4Z5 791 aaKnown RBP14.75□□□□□ -0.05
Trim56-201ENSMUST00000054384 Ggt6Q6PDE7 497 aa14.75□□□□□ -0.05
Trim56-201ENSMUST00000054384 Zrsr2Q62377 462 aaKnown RBP14.75□□□□□ -0.05
Trim56-201ENSMUST00000054384 Slc4a1apE9PX68 744 aa14.74□□□□□ -0.05
Trim56-201ENSMUST00000054384 Pkd2O35245 966 aa14.74□□□□□ -0.05
Trim56-201ENSMUST00000054384 Ccar1Q8CH18 1146 aaKnown RBP14.74□□□□□ -0.05
Trim56-201ENSMUST00000054384 Birc3O08863 600 aa14.74□□□□□ -0.05
Trim56-201ENSMUST00000054384 Map4P27546 1125 aaKnown RBP14.74□□□□□ -0.05
Trim56-201ENSMUST00000054384 Fyco1Q8VDC1 1437 aa14.73□□□□□ -0.05
Trim56-201ENSMUST00000054384 St18Q80TY4 1045 aa14.73□□□□□ -0.05
Trim56-201ENSMUST00000054384 Kri1Q8VDQ9 704 aaKnown RBP14.73□□□□□ -0.05
Trim56-201ENSMUST00000054384 Ecm2Q5FW85 670 aa14.72□□□□□ -0.05
Trim56-201ENSMUST00000054384 Kif27Q7M6Z4 1394 aa14.72□□□□□ -0.05
Trim56-201ENSMUST00000054384 Ccdc34Q3UI66 367 aa14.71□□□□□ -0.05
Trim56-201ENSMUST00000054384 Gm21969J3QJZ1 289 aa14.71□□□□□ -0.05
Trim56-201ENSMUST00000054384 Arid4aF8VPQ2 1261 aaKnown RBP14.71□□□□□ -0.06
Trim56-201ENSMUST00000054384 Filip1lQ6P6L0 1131 aa14.71□□□□□ -0.06
Trim56-201ENSMUST00000054384 HdgfP51859 237 aaKnown RBP14.71□□□□□ -0.06
Trim56-201ENSMUST00000054384 Ksr2Q3UVC0 959 aa14.71□□□□□ -0.06
Retrieved 100 of 22,080 RNA–protein pairs in 50.9 ms