RNA–Protein interactions for RNA: YML112W

CTK3, Transcript of Gamma subunit of C-terminal domain kinase I, yeastyeast

Gene CTK3, Length 891 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CTK3YML112W FUI1P38196 639 aa2.6□□□□□ -1.99
CTK3YML112W YEL068CP39977 110 aa2.6□□□□□ -1.99
CTK3YML112W HAT2P39984 401 aa2.6□□□□□ -1.99
CTK3YML112W YML037CQ03703 340 aa2.6□□□□□ -1.99
CTK3YML112W IVY1Q04934 453 aa2.6□□□□□ -1.99
CTK3YML112W SPE4Q12455 300 aa2.6□□□□□ -1.99
CTK3YML112W CTF3Q12748 733 aa2.6□□□□□ -1.99
CTK3YML112W PEP4P07267 405 aaKnown RBP2.59□□□□□ -1.99
CTK3YML112W MRP13P12686 339 aa2.59□□□□□ -1.99
CTK3YML112W ART10P18634 518 aaKnown RBP2.59□□□□□ -1.99
CTK3YML112W EXO70P19658 623 aa2.59□□□□□ -1.99
CTK3YML112W YCR007CP25354 239 aa2.59□□□□□ -1.99
CTK3YML112W FUN19P28003 413 aaPredicted RBP2.59□□□□□ -1.99
CTK3YML112W UTR4P32626 227 aa2.59□□□□□ -1.99
CTK3YML112W DED81P38707 554 aaKnown RBP2.59□□□□□ -1.99
CTK3YML112W LCL3P53153 274 aa2.59□□□□□ -1.99
CTK3YML112W MSO1P53604 210 aaKnown RBP2.59□□□□□ -1.99
CTK3YML112W FMP40Q08968 688 aaPredicted RBP2.59□□□□□ -1.99
CTK3YML112W HSH49Q99181 213 aaPredicted RBP2.59□□□□□ -1.99
CTK3YML112W TRX2P22803 104 aaKnown RBP2.58□□□□□ -2
CTK3YML112W PUT3P25502 979 aaPredicted RBP2.58□□□□□ -2
CTK3YML112W CHS3P29465 1165 aa2.58□□□□□ -2
CTK3YML112W SHP1P34223 423 aa2.58□□□□□ -2
CTK3YML112W LYS14P40971 790 aa2.58□□□□□ -2
CTK3YML112W RTS3P53289 263 aa2.58□□□□□ -2
CTK3YML112W TOF2Q02208 771 aa2.58□□□□□ -2
CTK3YML112W PHO92Q06390 306 aa2.58□□□□□ -2
CTK3YML112W HUA2Q12134 243 aa2.58□□□□□ -2
CTK3YML112W LSP1Q12230 341 aaKnown RBP2.58□□□□□ -2
CTK3YML112W YER078W-AQ3E7A2 54 aa2.58□□□□□ -2
CTK3YML112W LPD1P09624 499 aaKnown RBP2.57□□□□□ -2
CTK3YML112W DUG2P38149 878 aa2.57□□□□□ -2
CTK3YML112W ELP2P42935 788 aa2.57□□□□□ -2
CTK3YML112W RBG2P53295 368 aaKnown RBP2.57□□□□□ -2
CTK3YML112W MEP3P53390 489 aa2.57□□□□□ -2
CTK3YML112W IPI3P53877 555 aa2.57□□□□□ -2
CTK3YML112W OPY2Q06810 360 aa2.57□□□□□ -2
CTK3YML112W THP1Q08231 455 aa2.57□□□□□ -2
CTK3YML112W YBR126W-AQ8TGU7 68 aa2.57□□□□□ -2
CTK3YML112W CPR1P14832 162 aaKnown RBP2.56□□□□□ -2
CTK3YML112W EST1P17214 699 aaPredicted RBP2.56□□□□□ -2
CTK3YML112W TCM62P38228 572 aaKnown RBP2.56□□□□□ -2
CTK3YML112W ALK1P43633 760 aaKnown RBP2.56□□□□□ -2
CTK3YML112W GPI1P53306 609 aa2.56□□□□□ -2
CTK3YML112W YKU80Q04437 629 aa2.56□□□□□ -2
CTK3YML112W COQ9Q05779 260 aa2.56□□□□□ -2
CTK3YML112W YOR387CQ08910 206 aa2.56□□□□□ -2
CTK3YML112W CDC16P09798 840 aa2.55□□□□□ -2
CTK3YML112W RNA14P25298 677 aaKnown RBP2.55□□□□□ -2
CTK3YML112W SSH4P32343 579 aa2.55□□□□□ -2
CTK3YML112W SGS1P35187 1447 aa2.55□□□□□ -2
CTK3YML112W BNA4P38169 460 aa2.55□□□□□ -2
CTK3YML112W CCT6P39079 546 aa2.55□□□□□ -2
CTK3YML112W FAA2P39518 744 aa2.55□□□□□ -2
CTK3YML112W TIF4631P39935 952 aaKnown RBP2.55□□□□□ -2
CTK3YML112W ALG5P40350 334 aa2.55□□□□□ -2
CTK3YML112W GWT1P47026 490 aa2.55□□□□□ -2
CTK3YML112W VID30P53076 958 aa2.55□□□□□ -2
CTK3YML112W DUO1P53168 247 aaKnown RBP2.55□□□□□ -2
CTK3YML112W ZPR1P53303 486 aaKnown RBP2.55□□□□□ -2
CTK3YML112W HEL2Q05580 639 aaKnown RBP2.55□□□□□ -2
CTK3YML112W YEH1Q07804 573 aa2.55□□□□□ -2
CTK3YML112W NOP58Q12499 511 aaKnown RBP2.55□□□□□ -2
CTK3YML112W SPT15P13393 240 aaKnown RBP2.54□□□□□ -2
CTK3YML112W GLK1P17709 500 aaKnown RBP2.54□□□□□ -2
CTK3YML112W ELO2P25358 347 aa2.54□□□□□ -2
CTK3YML112W PAP1P29468 568 aaKnown RBP2.54□□□□□ -2
CTK3YML112W DEG1P31115 442 aaKnown RBP2.54□□□□□ -2
CTK3YML112W YEL045CP32616 141 aa2.54□□□□□ -2
CTK3YML112W MRP4P32902 394 aa2.54□□□□□ -2
CTK3YML112W MSN2P33748 704 aa2.54□□□□□ -2
CTK3YML112W SEF1P34228 1148 aa2.54□□□□□ -2
CTK3YML112W MSR1P38714 643 aa2.54□□□□□ -2
CTK3YML112W PRE5P40302 234 aaKnown RBP2.54□□□□□ -2
CTK3YML112W NGL3Q03210 505 aa2.54□□□□□ -2
CTK3YML112W RPC11Q04307 110 aaPredicted RBP2.54□□□□□ -2
CTK3YML112W RBS1Q05672 457 aaKnown RBP2.54□□□□□ -2
CTK3YML112W NMD4Q12129 218 aa2.54□□□□□ -2
CTK3YML112W BRR1Q99177 341 aaPredicted RBP2.54□□□□□ -2
CTK3YML112W YPT6Q99260 215 aa2.54□□□□□ -2
CTK3YML112W NAM9P27929 486 aa2.53□□□□□ -2
CTK3YML112W PAD1P33751 242 aaKnown RBP RIP-Chip data2.53□□□□□ -2not detected
CTK3YML112W MUD2P36084 527 aaKnown RBP2.53□□□□□ -2
CTK3YML112W BTN2P53286 410 aa2.53□□□□□ -2
CTK3YML112W HEF3P53978 1044 aaKnown RBP2.53□□□□□ -2
CTK3YML112W PIR3Q03180 325 aa2.53□□□□□ -2
CTK3YML112W PAL1Q05518 499 aaKnown RBP2.53□□□□□ -2
CTK3YML112W CFT2Q12102 859 aaPredicted RBP2.53□□□□□ -2
CTK3YML112W RRP12Q12754 1228 aaKnown RBP2.53□□□□□ -2
CTK3YML112W HIP1P06775 603 aa2.52□□□□□ -2.01
CTK3YML112W PRP2P20095 876 aaPredicted RBP2.52□□□□□ -2.01
CTK3YML112W MCM10P32354 571 aa2.52□□□□□ -2.01
CTK3YML112W YME1P32795 747 aa2.52□□□□□ -2.01
CTK3YML112W YBL059WP34224 193 aa2.52□□□□□ -2.01
CTK3YML112W RSM22P36056 628 aa2.52□□□□□ -2.01
CTK3YML112W RFS1P38234 210 aaKnown RBP2.52□□□□□ -2.01
CTK3YML112W RRT2P38332 387 aa2.52□□□□□ -2.01
CTK3YML112W NDT80P38830 627 aa2.52□□□□□ -2.01
CTK3YML112W FLC2P39719 783 aa2.52□□□□□ -2.01
CTK3YML112W YFL067WP43537 175 aa2.52□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 12.9 ms