RNA–Protein interactions for RNA: YDL229W

SSB1, Transcript of Cytoplasmic ATPase that is a ribosome-associated molecular chaperone, yeast

Gene SSB1, Length 1,842 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSB1	YDL229W	BZZ1	P38822	633 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	AIM18	P38884	321 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.28	□□□□□ -1.72	not detected
SSB1	YDL229W	FAA3	P39002	694 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	SOK1	P40317	901 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	IDP2	P41939	412 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	ALR2	P43553	858 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	NBP1	P52919	319 aa	Predicted RBP	4.28	□□□□□ -1.72
SSB1	YDL229W	UFD1	P53044	361 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	SLI1	P53304	468 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	TUB4	P53378	473 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	PEX25	Q02969	394 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	SKY1	Q03656	742 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	TDA9	Q04545	1251 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	NKP2	Q06162	153 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	OPT2	Q06593	877 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	RCL1	Q08096	367 aa	Predicted RBP	4.28	□□□□□ -1.72
SSB1	YDL229W	RUP1	Q12242	671 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	PCD1	Q12524	340 aa		4.28	□□□□□ -1.72
SSB1	YDL229W	USO1	P25386	1790 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	CDC8	P00572	216 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	GPM1	P00950	247 aa	Known RBP	4.27	□□□□□ -1.73
SSB1	YDL229W	MRP1	P10662	321 aa	Known RBP	4.27	□□□□□ -1.73
SSB1	YDL229W	URA6	P15700	204 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	SAN1	P22470	610 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	CHL1	P22516	861 aa	Predicted RBP	4.27	□□□□□ -1.73
SSB1	YDL229W	CMK2	P22517	447 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	AMS1	P22855	1083 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	MNE1	P24720	663 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	HCM1	P25364	564 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	SYP1	P25623	870 aa	Known RBP	4.27	□□□□□ -1.73
SSB1	YDL229W	YIM1	P28625	365 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	MCD4	P36051	919 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	LAS1	P36146	502 aa	Predicted RBP	4.27	□□□□□ -1.73
SSB1	YDL229W	BET3	P36149	193 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	SIF2	P38262	535 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	ERP5	P38819	212 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	GIP4	P39732	760 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	RTR1	P40084	226 aa	Predicted RBP	4.27	□□□□□ -1.73
SSB1	YDL229W	KHA1	P40309	873 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	TFG2	P41896	400 aa	Predicted RBP	4.27	□□□□□ -1.73
SSB1	YDL229W	FET5	P43561	622 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	IRC7	P43623	340 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	IMA1	P53051	589 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	YGL204C	P53089	101 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	SSU72	P53538	206 aa	Predicted RBP	4.27	□□□□□ -1.73
SSB1	YDL229W	MTQ1	P53944	314 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	PEX13	P80667	386 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	SMP3	Q04174	516 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	BCH1	Q05029	724 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	TFC6	Q06339	672 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	PSR2	Q07949	397 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	WRS1	Q12109	432 aa	Known RBP	4.27	□□□□□ -1.73
SSB1	YDL229W	LYS21	Q12122	440 aa	Known RBP	4.27	□□□□□ -1.73
SSB1	YDL229W	PAR32	Q12515	295 aa	Known RBP	4.27	□□□□□ -1.73
SSB1	YDL229W	PGA3	Q12746	312 aa	Known RBP	4.27	□□□□□ -1.73
SSB1	YDL229W	DFG16	Q99234	619 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	Q0144	Q9ZZW2	109 aa		4.27	□□□□□ -1.73
SSB1	YDL229W	RPN13	O13563	156 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	MF(ALPHA)1	P01149	165 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	AI3	P03877	415 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	RAD10	P06838	210 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	DST1	P07273	309 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	COS2	P0CX12	379 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	COS3	P0CX13	379 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	SLY1	P22213	666 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	YSP3	P25036	478 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	URA7	P28274	579 aa	Known RBP	4.26	□□□□□ -1.73
SSB1	YDL229W	CAM1	P29547	415 aa	Known RBP	4.26	□□□□□ -1.73
SSB1	YDL229W	SUA5	P32579	426 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	MDL1	P33310	695 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	SEF1	P34228	1148 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	ARA1	P38115	344 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	YHR045W	P38775	560 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	SPC97	P38863	823 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	AKR1	P39010	764 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	MNN9	P39107	395 aa	Known RBP	4.26	□□□□□ -1.73
SSB1	YDL229W	LSM5	P40089	93 aa	Known RBP	4.26	□□□□□ -1.73
SSB1	YDL229W	FAU1	P40099	211 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	LTP1	P40347	161 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	PTK2	P47116	818 aa	Known RBP	4.26	□□□□□ -1.73
SSB1	YDL229W	DAN4	P47179	1161 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	ORC5	P50874	479 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	YGR117C	P53270	476 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	TNA1	P53322	534 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	VPS75	P53853	264 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	VPS9	P54787	451 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	REG1	Q00816	1014 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	YPL080C	Q02826	108 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	SLD5	Q03406	294 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	PNP1	Q05788	311 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	BUR2	Q05949	395 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	BCP1	Q06338	283 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	YDL086W	Q07505	273 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	MFG1	Q07684	458 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	NBA1	Q08229	501 aa	Known RBP	4.26	□□□□□ -1.73
SSB1	YDL229W	FEX1	Q08913	375 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	YDL176W	Q12027	708 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	SRO7	Q12038	1033 aa		4.26	□□□□□ -1.73
SSB1	YDL229W	RCN2	Q12044	265 aa		4.26	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 49.8 ms