RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C FET5P43561 622 aa1.61□□□□□ -2.15
VPS54YDR027C VAM6Q07468 1049 aa1.61□□□□□ -2.15
VPS54YDR027C AHC1Q12433 566 aa1.61□□□□□ -2.15
VPS54YDR027C TY2A-LR1P0C2J4 438 aa1.6□□□□□ -2.15
VPS54YDR027C TY2A-FP0CX61 438 aa1.6□□□□□ -2.15
VPS54YDR027C TY2A-GR2P0CX62 438 aa1.6□□□□□ -2.15
VPS54YDR027C RAP1P11938 827 aa1.6□□□□□ -2.15
VPS54YDR027C YSP3P25036 478 aa1.6□□□□□ -2.15
VPS54YDR027C TY2A-CP25383 438 aa1.6□□□□□ -2.15
VPS54YDR027C RER1P25560 188 aa1.6□□□□□ -2.15
VPS54YDR027C MPE1P35728 441 aaKnown RBP1.6□□□□□ -2.15
VPS54YDR027C APE3P37302 537 aaKnown RBP1.6□□□□□ -2.15
VPS54YDR027C NPR3P38742 1146 aa1.6□□□□□ -2.15
VPS54YDR027C SHC1P39000 512 aa1.6□□□□□ -2.15
VPS54YDR027C PSD1P39006 500 aa1.6□□□□□ -2.15
VPS54YDR027C MRX1P40050 688 aa1.6□□□□□ -2.15
VPS54YDR027C KAP123P40069 1113 aaKnown RBP1.6□□□□□ -2.15
VPS54YDR027C HXT9P40885 567 aa1.6□□□□□ -2.15
VPS54YDR027C UPF3P48412 387 aaKnown RBP1.6□□□□□ -2.15
VPS54YDR027C CBK1P53894 756 aa1.6□□□□□ -2.15
VPS54YDR027C REG1Q00816 1014 aa1.6□□□□□ -2.15
VPS54YDR027C TY2A-DR2Q03483 438 aa1.6□□□□□ -2.15
VPS54YDR027C YDL218WQ07629 317 aa1.6□□□□□ -2.15
VPS54YDR027C YLL056CQ12177 298 aa1.6□□□□□ -2.15
VPS54YDR027C TY2A-BQ12260 438 aa1.6□□□□□ -2.15
VPS54YDR027C TY2A-OR2Q12293 438 aa1.6□□□□□ -2.15
VPS54YDR027C TY2A-DR1Q12392 438 aa1.6□□□□□ -2.15
VPS54YDR027C TY2A-OR1Q12439 438 aa1.6□□□□□ -2.15
VPS54YDR027C TY2A-DR3Q99303 438 aa1.6□□□□□ -2.15
VPS54YDR027C IRA1P18963 3092 aa1.6□□□□□ -2.15
VPS54YDR027C FIG2P25653 1609 aa1.6□□□□□ -2.15
VPS54YDR027C YML003WP0CF16 290 aa1.6□□□□□ -2.15
VPS54YDR027C LDB16P25587 256 aa1.6□□□□□ -2.15
VPS54YDR027C CNS1P33313 385 aa1.6□□□□□ -2.15
VPS54YDR027C ERG7P38604 731 aa1.6□□□□□ -2.15
VPS54YDR027C UME6P39001 836 aa1.6□□□□□ -2.15
VPS54YDR027C NDE1P40215 560 aa1.6□□□□□ -2.15
VPS54YDR027C LYS14P40971 790 aa1.6□□□□□ -2.15
VPS54YDR027C YFL040WP43562 540 aa1.6□□□□□ -2.15
VPS54YDR027C COG1P53079 417 aa1.6□□□□□ -2.15
VPS54YDR027C BOR1P53838 576 aa1.6□□□□□ -2.15
VPS54YDR027C MDM1Q01846 1127 aa1.6□□□□□ -2.15
VPS54YDR027C RIM15P43565 1770 aa1.6□□□□□ -2.15
VPS54YDR027C PET111P08468 800 aa1.59□□□□□ -2.15
VPS54YDR027C KRS1P15180 591 aaKnown RBP1.59□□□□□ -2.15
VPS54YDR027C CBF2P32504 956 aa1.59□□□□□ -2.15
VPS54YDR027C MRPL36P36531 177 aa1.59□□□□□ -2.15
VPS54YDR027C SLX1P38324 304 aa1.59□□□□□ -2.15
VPS54YDR027C ESL1P40456 1118 aa1.59□□□□□ -2.15
VPS54YDR027C YPI1P43587 155 aa1.59□□□□□ -2.15
VPS54YDR027C CSL4P53859 292 aaPredicted RBP1.59□□□□□ -2.15
VPS54YDR027C TIM10P87108 93 aa1.59□□□□□ -2.15
VPS54YDR027C MED1Q12321 566 aa1.59□□□□□ -2.15
VPS54YDR027C ATP2P00830 511 aaKnown RBP1.59□□□□□ -2.16
VPS54YDR027C GDH1P07262 454 aaKnown RBP1.59□□□□□ -2.16
VPS54YDR027C CDC16P09798 840 aa1.59□□□□□ -2.16
VPS54YDR027C HSC82P15108 705 aaKnown RBP1.59□□□□□ -2.16
VPS54YDR027C PFK2P16862 959 aaKnown RBP RIP-Chip data1.59□□□□□ -2.16not detected
VPS54YDR027C MRP20P32387 263 aa1.59□□□□□ -2.16
VPS54YDR027C ERG1P32476 496 aaKnown RBP1.59□□□□□ -2.16
VPS54YDR027C SOF1P33750 489 aaKnown RBP1.59□□□□□ -2.16
VPS54YDR027C YBP1P38315 674 aa1.59□□□□□ -2.16
VPS54YDR027C RGI2P40188 164 aa1.59□□□□□ -2.16
VPS54YDR027C RIC1P40395 1056 aa1.59□□□□□ -2.16
VPS54YDR027C TMA108P40462 946 aa1.59□□□□□ -2.16
VPS54YDR027C FAF1P40546 346 aaPredicted RBP1.59□□□□□ -2.16
VPS54YDR027C SPG5P42933 373 aa1.59□□□□□ -2.16
VPS54YDR027C BSC6Q08280 497 aa1.59□□□□□ -2.16
VPS54YDR027C SWT1Q12104 458 aa1.59□□□□□ -2.16
VPS54YDR027C FUM1P08417 488 aaKnown RBP1.58□□□□□ -2.16
VPS54YDR027C MET8P15807 274 aa1.58□□□□□ -2.16
VPS54YDR027C CLB2P24869 491 aa1.58□□□□□ -2.16
VPS54YDR027C IMP2'P32351 346 aa1.58□□□□□ -2.16
VPS54YDR027C GEX2P36173 615 aa1.58□□□□□ -2.16
VPS54YDR027C RRT2P38332 387 aa1.58□□□□□ -2.16
VPS54YDR027C CTK2P46962 323 aa1.58□□□□□ -2.16
VPS54YDR027C YJL132WP47014 750 aa1.58□□□□□ -2.16
VPS54YDR027C YNR061CP53747 219 aa1.58□□□□□ -2.16
VPS54YDR027C YKU80Q04437 629 aa1.58□□□□□ -2.16
VPS54YDR027C ECM30Q06673 1274 aa1.58□□□□□ -2.16
VPS54YDR027C ENT4Q07872 247 aa1.58□□□□□ -2.16
VPS54YDR027C SDH5Q08230 162 aa1.58□□□□□ -2.16
VPS54YDR027C TMA16Q08687 178 aa1.58□□□□□ -2.16
VPS54YDR027C YRF1-4O13559 1382 aa1.58□□□□□ -2.16
VPS54YDR027C IRA2P19158 3079 aa1.58□□□□□ -2.16
VPS54YDR027C GSC2P40989 1895 aa1.58□□□□□ -2.16
VPS54YDR027C TY4B-HP0C2J7 1802 aa1.58□□□□□ -2.16
VPS54YDR027C TY4B-JP47024 1803 aa1.58□□□□□ -2.16
VPS54YDR027C YLR302CO13544 120 aa1.58□□□□□ -2.16
VPS54YDR027C RPB2P08518 1224 aaKnown RBP1.58□□□□□ -2.16
VPS54YDR027C SRP54P20424 541 aaKnown RBP1.58□□□□□ -2.16
VPS54YDR027C ERG8P24521 451 aa1.58□□□□□ -2.16
VPS54YDR027C NOP16P40007 231 aaKnown RBP1.58□□□□□ -2.16
VPS54YDR027C YIL161WP40449 235 aaKnown RBP1.58□□□□□ -2.16
VPS54YDR027C YJL213WP40896 331 aa1.58□□□□□ -2.16
VPS54YDR027C YGL242CP53066 181 aa1.58□□□□□ -2.16
VPS54YDR027C YTP1P53584 459 aa1.58□□□□□ -2.16
VPS54YDR027C YSA1Q01976 231 aa1.58□□□□□ -2.16
VPS54YDR027C VIP1Q06685 1146 aaKnown RBP1.58□□□□□ -2.16
VPS54YDR027C VCX1Q99385 411 aa1.58□□□□□ -2.16
Retrieved 100 of 5,963 RNA–protein pairs in 27.8 ms