Protein–RNA interactions for Protein: P0C2J4

TY2A-LR1, Transposon Ty2-LR1 Gag polyprotein, yeastyeast

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY2A-LR1P0C2J4 YML009W-BYML009W-B 477 nt19.57■□□□□ 0.72
TY2A-LR1P0C2J4 NSR1YGR159C 1245 nt19.46■□□□□ 0.71
TY2A-LR1P0C2J4 NOP1YDL014W 984 nt18.99■□□□□ 0.63
TY2A-LR1P0C2J4 YKL036CYKL036C 393 nt17.44■□□□□ 0.38
TY2A-LR1P0C2J4 MDJ1YFL016C 1536 nt17.38■□□□□ 0.37
TY2A-LR1P0C2J4 SRX1YKL086W 384 nt16.56■□□□□ 0.24
TY2A-LR1P0C2J4 Q0297Q0297 156 nt16.55■□□□□ 0.24
TY2A-LR1P0C2J4 YJL027CYJL027C 417 nt16.27■□□□□ 0.2
TY2A-LR1P0C2J4 SCS3YGL126W 1143 nt15.82■□□□□ 0.12
TY2A-LR1P0C2J4 YCR051WYCR051W 669 nt15.74■□□□□ 0.11
TY2A-LR1P0C2J4 DBP2YNL112W 1641 nt15.3■□□□□ 0.04
TY2A-LR1P0C2J4 YOL085CYOL085C 342 nt15.08■□□□□ 0
TY2A-LR1P0C2J4 TRN1tP(UGG)A 72 nt15.02■□□□□ -0
TY2A-LR1P0C2J4 SUF9tP(UGG)F 72 nt15.02■□□□□ -0
TY2A-LR1P0C2J4 SUF8tP(UGG)H 72 nt15.02■□□□□ -0
TY2A-LR1P0C2J4 tP(UGG)LtP(UGG)L 72 nt15.02■□□□□ -0
TY2A-LR1P0C2J4 SUF7tP(UGG)M 72 nt15.02■□□□□ -0
TY2A-LR1P0C2J4 tP(UGG)N1tP(UGG)N1 72 nt15.02■□□□□ -0
TY2A-LR1P0C2J4 tP(UGG)N2tP(UGG)N2 72 nt15.02■□□□□ -0
TY2A-LR1P0C2J4 tP(UGG)O1tP(UGG)O1 72 nt15.02■□□□□ -0
TY2A-LR1P0C2J4 SUF11tP(UGG)O2 72 nt15.02■□□□□ -0
TY2A-LR1P0C2J4 PKP1YIL042C 1185 nt14.89□□□□□ -0.03
TY2A-LR1P0C2J4 CCC1YLR220W 969 nt14.89□□□□□ -0.03
TY2A-LR1P0C2J4 RPP1BYDL130W 321 nt14.87□□□□□ -0.03
TY2A-LR1P0C2J4 YBR190WYBR190W 312 nt14.82□□□□□ -0.04
TY2A-LR1P0C2J4 RTC3YHR087W 336 nt14.53□□□□□ -0.08
TY2A-LR1P0C2J4 RVS167YDR388W 1449 nt14.44□□□□□ -0.1
TY2A-LR1P0C2J4 SCJ1YMR214W 1134 nt14.32□□□□□ -0.12
TY2A-LR1P0C2J4 PET122YER153C 765 nt14.23□□□□□ -0.13
TY2A-LR1P0C2J4 tP(UGG)O3tP(UGG)O3 72 nt14.19□□□□□ -0.14
TY2A-LR1P0C2J4 ATS1YAL020C 1002 nt14.11□□□□□ -0.15
TY2A-LR1P0C2J4 SCR1SCR1 522 nt14.07□□□□□ -0.16
TY2A-LR1P0C2J4 SHR5YOL110W 714 nt13.9□□□□□ -0.18
TY2A-LR1P0C2J4 RRN5YLR141W 1092 nt13.79□□□□□ -0.2
TY2A-LR1P0C2J4 YDJ1YNL064C 1230 nt13.72□□□□□ -0.21
TY2A-LR1P0C2J4 URN1YPR152C 1398 nt13.56□□□□□ -0.24
TY2A-LR1P0C2J4 DEP1YAL013W 1218 nt13.54□□□□□ -0.24
TY2A-LR1P0C2J4 RSB1YOR049C 1065 nt13.53□□□□□ -0.24
TY2A-LR1P0C2J4 YER088W-BYER088W-B 147 nt13.52□□□□□ -0.25
TY2A-LR1P0C2J4 PUT4YOR348C 1884 nt13.49□□□□□ -0.25
TY2A-LR1P0C2J4 GAR1YHR089C 618 nt13.45□□□□□ -0.26
TY2A-LR1P0C2J4 RPN10YHR200W 807 nt13.38□□□□□ -0.27
TY2A-LR1P0C2J4 OPI9YLR338W 858 nt13.36□□□□□ -0.27
TY2A-LR1P0C2J4 YNL208WYNL208W 600 nt13.31□□□□□ -0.28
TY2A-LR1P0C2J4 SAH1YER043C 1350 nt13.3□□□□□ -0.28
TY2A-LR1P0C2J4 ARE1YCR048W 1833 nt13.23□□□□□ -0.29
TY2A-LR1P0C2J4 YHR049C-AYHR049C-A 297 nt13.11□□□□□ -0.31
TY2A-LR1P0C2J4 POA1YBR022W 534 nt13.09□□□□□ -0.31
TY2A-LR1P0C2J4 PST2YDR032C 597 nt13.06□□□□□ -0.32
TY2A-LR1P0C2J4 PUN1YLR414C 792 nt13□□□□□ -0.33
TY2A-LR1P0C2J4 TIR1YER011W 765 nt12.99□□□□□ -0.33
TY2A-LR1P0C2J4 YJR018WYJR018W 363 nt12.92□□□□□ -0.34
TY2A-LR1P0C2J4 SSA3YBL075C 1950 nt12.89□□□□□ -0.35
TY2A-LR1P0C2J4 PTC2YER089C 1395 nt12.83□□□□□ -0.36
TY2A-LR1P0C2J4 SSA1YAL005C 1929 nt12.83□□□□□ -0.36
TY2A-LR1P0C2J4 BSC6YOL137W 1494 nt12.83□□□□□ -0.36
TY2A-LR1P0C2J4 BUD23YCR047C 828 nt12.82□□□□□ -0.36
TY2A-LR1P0C2J4 RPP2BYDR382W 333 nt12.68□□□□□ -0.38
TY2A-LR1P0C2J4 YJR120WYJR120W 351 nt12.68□□□□□ -0.38
TY2A-LR1P0C2J4 NAB2YGL122C 1578 nt12.67□□□□□ -0.38
TY2A-LR1P0C2J4 SRB2YHR041C 633 nt12.58□□□□□ -0.4
TY2A-LR1P0C2J4 SHU1YHL006C 453 nt12.57□□□□□ -0.4
TY2A-LR1P0C2J4 Q0182Q0182 405 nt12.57□□□□□ -0.4
TY2A-LR1P0C2J4 YKL097CYKL097C 411 nt12.56□□□□□ -0.4
TY2A-LR1P0C2J4 FPR4YLR449W 1179 nt12.51□□□□□ -0.41
TY2A-LR1P0C2J4 DAL1YIR027C 1383 nt12.51□□□□□ -0.41
TY2A-LR1P0C2J4 FIS1YIL065C 468 nt12.5□□□□□ -0.41
TY2A-LR1P0C2J4 INM2YDR287W 879 nt12.47□□□□□ -0.41
TY2A-LR1P0C2J4 WWM1YFL010C 636 nt12.4□□□□□ -0.42
TY2A-LR1P0C2J4 YAL037C-BYAL037C-B 975 nt12.4□□□□□ -0.42
TY2A-LR1P0C2J4 PHO4YFR034C 939 nt12.39□□□□□ -0.43
TY2A-LR1P0C2J4 BDH2YAL061W 1254 nt12.38□□□□□ -0.43
TY2A-LR1P0C2J4 YBL100CYBL100C 315 nt12.36□□□□□ -0.43
TY2A-LR1P0C2J4 YGR021WYGR021W 873 nt12.33□□□□□ -0.44
TY2A-LR1P0C2J4 HOM6YJR139C 1080 nt12.25□□□□□ -0.45
TY2A-LR1P0C2J4 YFL021C-AYFL021C-A 855 nt12.21□□□□□ -0.45
TY2A-LR1P0C2J4 MNP1YGL068W 585 nt12.21□□□□□ -0.45
TY2A-LR1P0C2J4 FUN26YAL022C 1554 nt12.2□□□□□ -0.46
TY2A-LR1P0C2J4 LSM3YLR438C-A 270 nt12.19□□□□□ -0.46
TY2A-LR1P0C2J4 TRM9YML014W 840 nt12.16□□□□□ -0.46
TY2A-LR1P0C2J4 SPT5YML010W 3192 nt12.15□□□□□ -0.46
TY2A-LR1P0C2J4 YPS1YLR120C 1710 nt12.14□□□□□ -0.47
TY2A-LR1P0C2J4 RKM5YLR137W 1104 nt12.09□□□□□ -0.47
TY2A-LR1P0C2J4 YDR095CYDR095C 411 nt12.08□□□□□ -0.48
TY2A-LR1P0C2J4 ALF1YNL148C 765 nt12.08□□□□□ -0.48
TY2A-LR1P0C2J4 MOT3YMR070W 1473 nt12.08□□□□□ -0.48
TY2A-LR1P0C2J4 YHR165W-AYHR165W-A 312 nt12.06□□□□□ -0.48
TY2A-LR1P0C2J4 MEP2YNL142W 1500 nt12.03□□□□□ -0.48
TY2A-LR1P0C2J4 CCT6YDR188W 1641 nt12.03□□□□□ -0.48
TY2A-LR1P0C2J4 YOR139CYOR139C 393 nt12.02□□□□□ -0.49
TY2A-LR1P0C2J4 NPL3YDR432W 1245 nt12□□□□□ -0.49
TY2A-LR1P0C2J4 YOL037CYOL037C 354 nt11.99□□□□□ -0.49
TY2A-LR1P0C2J4 SUF2tP(AGG)C 72 nt11.97□□□□□ -0.49
TY2A-LR1P0C2J4 SUF10tP(AGG)N 72 nt11.97□□□□□ -0.49
TY2A-LR1P0C2J4 RPP2AYOL039W 321 nt11.85□□□□□ -0.51
TY2A-LR1P0C2J4 DCW1YKL046C 1350 nt11.84□□□□□ -0.51
TY2A-LR1P0C2J4 SIS1YNL007C 1059 nt11.83□□□□□ -0.52
TY2A-LR1P0C2J4 SSA4YER103W 1929 nt11.81□□□□□ -0.52
TY2A-LR1P0C2J4 PTP1YDL230W 1008 nt11.77□□□□□ -0.53
TY2A-LR1P0C2J4 EMI2YDR516C 1503 nt11.7□□□□□ -0.54
Retrieved 100 of 7,029 protein–RNA pairs in 10.2 ms