RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W BET4Q00618 327 aa3.89□□□□□ -1.79
SSL1YLR005W ENT5Q03769 411 aaKnown RBP3.89□□□□□ -1.79
SSL1YLR005W YDR131CQ03899 556 aa3.89□□□□□ -1.79
SSL1YLR005W YMR018WQ04364 514 aa3.89□□□□□ -1.79
SSL1YLR005W YLR287CQ05881 355 aa3.89□□□□□ -1.79
SSL1YLR005W CMS1Q07897 291 aaKnown RBP3.89□□□□□ -1.79
SSL1YLR005W PGC1Q08959 321 aa3.89□□□□□ -1.79
SSL1YLR005W SUL2Q12325 893 aa3.89□□□□□ -1.79
SSL1YLR005W EFG1Q3E705 233 aaKnown RBP3.89□□□□□ -1.79
SSL1YLR005W IZH4Q99393 312 aa3.89□□□□□ -1.79
SSL1YLR005W UTP20P35194 2493 aaKnown RBP3.88□□□□□ -1.79
SSL1YLR005W ALG7P07286 448 aa3.88□□□□□ -1.79
SSL1YLR005W TUB3P09734 445 aaKnown RBP3.88□□□□□ -1.79
SSL1YLR005W TRX1P22217 103 aaKnown RBP3.88□□□□□ -1.79
SSL1YLR005W JNM1P36224 373 aa3.88□□□□□ -1.79
SSL1YLR005W SRP72P38688 640 aaKnown RBP3.88□□□□□ -1.79
SSL1YLR005W CTF8P38877 133 aa3.88□□□□□ -1.79
SSL1YLR005W AIM18P38884 321 aa3.88□□□□□ -1.79
SSL1YLR005W SPC72P39723 622 aa3.88□□□□□ -1.79
SSL1YLR005W PTI1P39927 425 aaPredicted RBP3.88□□□□□ -1.79
SSL1YLR005W SET2P46995 733 aaKnown RBP3.88□□□□□ -1.79
SSL1YLR005W CIS3P47001 227 aa3.88□□□□□ -1.79
SSL1YLR005W YJL049WP47048 450 aa3.88□□□□□ -1.79
SSL1YLR005W ASN2P49090 572 aaKnown RBP3.88□□□□□ -1.79
SSL1YLR005W NBP35P52920 328 aa3.88□□□□□ -1.79
SSL1YLR005W PCL10P53124 433 aa3.88□□□□□ -1.79
SSL1YLR005W SWC4P53201 476 aa3.88□□□□□ -1.79
SSL1YLR005W RTS3P53289 263 aa3.88□□□□□ -1.79
SSL1YLR005W ALG12P53730 551 aa3.88□□□□□ -1.79
SSL1YLR005W YNL040WP53960 456 aaPredicted RBP3.88□□□□□ -1.79
SSL1YLR005W RNT1Q02555 471 aa3.88□□□□□ -1.79
SSL1YLR005W EGD1Q02642 157 aaKnown RBP3.88□□□□□ -1.79
SSL1YLR005W ELP3Q02908 557 aaKnown RBP3.88□□□□□ -1.79
SSL1YLR005W NAN1Q02931 896 aaKnown RBP3.88□□□□□ -1.79
SSL1YLR005W IVY1Q04934 453 aa3.88□□□□□ -1.79
SSL1YLR005W OPY2Q06810 360 aa3.88□□□□□ -1.79
SSL1YLR005W HBT1Q07653 1046 aaKnown RBP3.88□□□□□ -1.79
SSL1YLR005W ATG10Q07879 167 aa3.88□□□□□ -1.79
SSL1YLR005W TMA16Q08687 178 aa3.88□□□□□ -1.79
SSL1YLR005W VPS68Q12016 184 aa3.88□□□□□ -1.79
SSL1YLR005W SWM1Q12379 170 aa3.88□□□□□ -1.79
SSL1YLR005W TUP1P16649 713 aa3.87□□□□□ -1.79
SSL1YLR005W SCL1P21243 252 aaKnown RBP3.87□□□□□ -1.79
SSL1YLR005W SPR1P32603 445 aa3.87□□□□□ -1.79
SSL1YLR005W CTF13P35203 478 aa3.87□□□□□ -1.79
SSL1YLR005W YKL050CP35736 922 aa3.87□□□□□ -1.79
SSL1YLR005W PSY4P38193 441 aa3.87□□□□□ -1.79
SSL1YLR005W BIT2P38346 545 aa3.87□□□□□ -1.79
SSL1YLR005W RPH1P39956 796 aa3.87□□□□□ -1.79
SSL1YLR005W PAN6P40459 309 aa3.87□□□□□ -1.79
SSL1YLR005W ROK1P45818 564 aaPredicted RBP3.87□□□□□ -1.79
SSL1YLR005W BUD13P46947 266 aaPredicted RBP3.87□□□□□ -1.79
SSL1YLR005W BIR1P47134 954 aa3.87□□□□□ -1.79
SSL1YLR005W RFX1P48743 811 aa3.87□□□□□ -1.79
SSL1YLR005W ERP6P53198 216 aa3.87□□□□□ -1.79
SSL1YLR005W NPL3Q01560 414 aaKnown RBP RIP-Chip data3.87□□□□□ -1.79not detected
SSL1YLR005W POB3Q04636 552 aaKnown RBP3.87□□□□□ -1.79
SSL1YLR005W ARG7Q04728 441 aa3.87□□□□□ -1.79
SSL1YLR005W VID22Q05934 901 aa3.87□□□□□ -1.79
SSL1YLR005W LDB18Q07887 179 aa3.87□□□□□ -1.79
SSL1YLR005W AAD15Q08361 143 aa3.87□□□□□ -1.79
SSL1YLR005W ENV7Q12003 364 aa3.87□□□□□ -1.79
SSL1YLR005W PRP4P20053 465 aaKnown RBP3.86□□□□□ -1.79
SSL1YLR005W SEC15P22224 910 aa3.86□□□□□ -1.79
SSL1YLR005W UBA1P22515 1024 aaKnown RBP3.86□□□□□ -1.79
SSL1YLR005W BEM1P29366 551 aa3.86□□□□□ -1.79
SSL1YLR005W PLC1P32383 869 aa3.86□□□□□ -1.79
SSL1YLR005W RAD5P32849 1169 aaPredicted RBP3.86□□□□□ -1.79
SSL1YLR005W MRS6P32864 603 aaKnown RBP3.86□□□□□ -1.79
SSL1YLR005W TAF14P35189 244 aa3.86□□□□□ -1.79
SSL1YLR005W YAL037WP39728 267 aa3.86□□□□□ -1.79
SSL1YLR005W FKH2P41813 862 aa3.86□□□□□ -1.79
SSL1YLR005W TAD1P53065 400 aa3.86□□□□□ -1.79
SSL1YLR005W STR3P53101 465 aaKnown RBP3.86□□□□□ -1.79
SSL1YLR005W YGR021WP53212 290 aa3.86□□□□□ -1.79
SSL1YLR005W CCE1Q03702 353 aa3.86□□□□□ -1.79
SSL1YLR005W ATG16Q03818 150 aa3.86□□□□□ -1.79
SSL1YLR005W CIA1Q05583 330 aa3.86□□□□□ -1.79
SSL1YLR005W SWC7Q06707 132 aa3.86□□□□□ -1.79
SSL1YLR005W PLB3Q08108 686 aa3.86□□□□□ -1.79
SSL1YLR005W STT4P37297 1900 aa3.85□□□□□ -1.79
SSL1YLR005W YPR089WO13585 888 aa3.85□□□□□ -1.79
SSL1YLR005W MPH2P0CD99 609 aa3.85□□□□□ -1.79
SSL1YLR005W RED1P14291 827 aa3.85□□□□□ -1.79
SSL1YLR005W GAL11P19659 1081 aa3.85□□□□□ -1.79
SSL1YLR005W SEC65P29478 273 aa3.85□□□□□ -1.79
SSL1YLR005W DBF4P32325 704 aa3.85□□□□□ -1.79
SSL1YLR005W RPN12P32496 274 aa3.85□□□□□ -1.79
SSL1YLR005W TFC3P34111 1160 aa3.85□□□□□ -1.79
SSL1YLR005W BLI1P35727 113 aa3.85□□□□□ -1.79
SSL1YLR005W ALY1P36117 915 aa3.85□□□□□ -1.79
SSL1YLR005W IML3P38265 245 aa3.85□□□□□ -1.79
SSL1YLR005W SMF1P38925 575 aa3.85□□□□□ -1.79
SSL1YLR005W KHA1P40309 873 aa3.85□□□□□ -1.79
SSL1YLR005W VHR1P40522 640 aa3.85□□□□□ -1.79
SSL1YLR005W RRT5P43607 289 aa3.85□□□□□ -1.79
SSL1YLR005W OSW7P43611 510 aa3.85□□□□□ -1.79
SSL1YLR005W TRF5P48561 642 aaKnown RBP3.85□□□□□ -1.79
SSL1YLR005W JJJ1P53863 590 aa3.85□□□□□ -1.79
SSL1YLR005W CDC14Q00684 551 aa3.85□□□□□ -1.79
Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms