RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHR3	YDL212W	TDA7	P53882	636 aa	Predicted RBP	4.25	□□□□□ -1.73
SHR3	YDL212W	MSS11	Q03825	758 aa		4.25	□□□□□ -1.73
SHR3	YDL212W	YPL272C	Q08984	517 aa		4.25	□□□□□ -1.73
SHR3	YDL212W	ARG81	P05085	880 aa		4.24	□□□□□ -1.73
SHR3	YDL212W	YML002W	P0CF17	737 aa		4.24	□□□□□ -1.73
SHR3	YDL212W	RPL19A	P0CX82	189 aa	Known RBP	4.24	□□□□□ -1.73
SHR3	YDL212W	RPL19B	P0CX83	189 aa	Predicted RBP	4.24	□□□□□ -1.73
SHR3	YDL212W	RER1	P25560	188 aa		4.24	□□□□□ -1.73
SHR3	YDL212W	MTR2	P34232	184 aa	Known RBP	4.24	□□□□□ -1.73
SHR3	YDL212W	AXL1	P40851	1208 aa		4.24	□□□□□ -1.73
SHR3	YDL212W	ERG26	P53199	349 aa	Known RBP	4.24	□□□□□ -1.73
SHR3	YDL212W	CRZ1	P53968	678 aa		4.24	□□□□□ -1.73
SHR3	YDL212W	RSM23	Q01163	450 aa		4.24	□□□□□ -1.73
SHR3	YDL212W	YKU80	Q04437	629 aa		4.24	□□□□□ -1.73
SHR3	YDL212W	ECM30	Q06673	1274 aa		4.24	□□□□□ -1.73
SHR3	YDL212W	LEU9	Q12166	604 aa	Known RBP	4.24	□□□□□ -1.73
SHR3	YDL212W	CDC24	P11433	854 aa	Predicted RBP	4.23	□□□□□ -1.73
SHR3	YDL212W	VMA16	P23968	213 aa		4.23	□□□□□ -1.73
SHR3	YDL212W	ADH7	P25377	361 aa		4.23	□□□□□ -1.73
SHR3	YDL212W	MIC60	P36112	540 aa		4.23	□□□□□ -1.73
SHR3	YDL212W	RTS1	P38903	757 aa		4.23	□□□□□ -1.73
SHR3	YDL212W	BSC5	P53755	489 aa		4.23	□□□□□ -1.73
SHR3	YDL212W	YVH1	Q02256	364 aa	Known RBP	4.23	□□□□□ -1.73
SHR3	YDL212W	YMR087W	Q04299	284 aa		4.23	□□□□□ -1.73
SHR3	YDL212W	DPB4	Q04603	196 aa	Known RBP	4.23	□□□□□ -1.73
SHR3	YDL212W	TYR1	P20049	452 aa		4.22	□□□□□ -1.73
SHR3	YDL212W	ROT2	P38138	954 aa		4.22	□□□□□ -1.73
SHR3	YDL212W	KRE9	P39005	276 aa		4.22	□□□□□ -1.73
SHR3	YDL212W	LYS14	P40971	790 aa		4.22	□□□□□ -1.73
SHR3	YDL212W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
SHR3	YDL212W	YPL014W	Q02606	381 aa		4.22	□□□□□ -1.73
SHR3	YDL212W	MSC1	Q03104	513 aa		4.22	□□□□□ -1.73
SHR3	YDL212W	TCO89	Q08921	799 aa		4.22	□□□□□ -1.73
SHR3	YDL212W	PDH1	Q12428	516 aa	Known RBP	4.22	□□□□□ -1.73
SHR3	YDL212W	SPE4	Q12455	300 aa		4.22	□□□□□ -1.73
SHR3	YDL212W	SKM1	Q12469	655 aa		4.22	□□□□□ -1.73
SHR3	YDL212W	ARD1	P07347	238 aa	Predicted RBP	4.21	□□□□□ -1.74
SHR3	YDL212W	PUP3	P25451	205 aa	Known RBP	4.21	□□□□□ -1.74
SHR3	YDL212W	SNC1	P31109	117 aa		4.21	□□□□□ -1.74
SHR3	YDL212W	MCM10	P32354	571 aa		4.21	□□□□□ -1.74
SHR3	YDL212W	LOS1	P33418	1100 aa	Predicted RBP	4.21	□□□□□ -1.74
SHR3	YDL212W	NUP133	P36161	1157 aa		4.21	□□□□□ -1.74
SHR3	YDL212W	DHH1	P39517	506 aa	Known RBP	4.21	□□□□□ -1.74
SHR3	YDL212W	YJL068C	P40363	299 aa		4.21	□□□□□ -1.74
SHR3	YDL212W	DIM1	P41819	318 aa	Known RBP	4.21	□□□□□ -1.74
SHR3	YDL212W	EFM6	P53970	246 aa		4.21	□□□□□ -1.74
SHR3	YDL212W	SSK1	Q07084	712 aa		4.21	□□□□□ -1.74
SHR3	YDL212W	ARP6	Q12509	438 aa		4.21	□□□□□ -1.74
SHR3	YDL212W	YBR298C-A	Q8TGK4	73 aa		4.21	□□□□□ -1.74
SHR3	YDL212W	BUD5	P25300	642 aa	Predicted RBP	4.2	□□□□□ -1.74
SHR3	YDL212W	ATS1	P31386	333 aa		4.2	□□□□□ -1.74
SHR3	YDL212W	LAG1	P38703	411 aa		4.2	□□□□□ -1.74
SHR3	YDL212W	LCL3	P53153	274 aa		4.2	□□□□□ -1.74
SHR3	YDL212W	THI20	Q08224	551 aa		4.2	□□□□□ -1.74
SHR3	YDL212W	PRP16	P15938	1071 aa	Predicted RBP	4.19	□□□□□ -1.74
SHR3	YDL212W	CHS3	P29465	1165 aa		4.19	□□□□□ -1.74
SHR3	YDL212W	YBL055C	P34220	418 aa	Predicted RBP	4.19	□□□□□ -1.74
SHR3	YDL212W	YKL100C	P34248	587 aa		4.19	□□□□□ -1.74
SHR3	YDL212W	ECM15	P35195	104 aa		4.19	□□□□□ -1.74
SHR3	YDL212W	MUD2	P36084	527 aa	Known RBP	4.19	□□□□□ -1.74
SHR3	YDL212W	AGP2	P38090	596 aa		4.19	□□□□□ -1.74
SHR3	YDL212W	YEL068C	P39977	110 aa		4.19	□□□□□ -1.74
SHR3	YDL212W	APT1	P49435	187 aa	Known RBP	4.19	□□□□□ -1.74
SHR3	YDL212W	DRN1	P53255	507 aa	Known RBP	4.19	□□□□□ -1.74
SHR3	YDL212W	SMM1	P53720	384 aa	Known RBP	4.19	□□□□□ -1.74
SHR3	YDL212W	YML037C	Q03703	340 aa		4.19	□□□□□ -1.74
SHR3	YDL212W	YMR160W	Q03823	816 aa		4.19	□□□□□ -1.74
SHR3	YDL212W	HCR1	Q05775	265 aa	Known RBP	4.19	□□□□□ -1.74
SHR3	YDL212W	OPY2	Q06810	360 aa		4.19	□□□□□ -1.74
SHR3	YDL212W	CDC16	P09798	840 aa		4.18	□□□□□ -1.74
SHR3	YDL212W	YCK1	P23291	538 aa		4.18	□□□□□ -1.74
SHR3	YDL212W	POL4	P25615	582 aa		4.18	□□□□□ -1.74
SHR3	YDL212W	AUR1	P36107	401 aa	Predicted RBP	4.18	□□□□□ -1.74
SHR3	YDL212W	IKS1	P47042	667 aa		4.18	□□□□□ -1.74
SHR3	YDL212W	BUD32	P53323	261 aa		4.18	□□□□□ -1.74
SHR3	YDL212W	SAM50	P53969	484 aa		4.18	□□□□□ -1.74
SHR3	YDL212W	RHO4	Q00246	291 aa		4.18	□□□□□ -1.74
SHR3	YDL212W	RPM2	Q02773	1202 aa		4.18	□□□□□ -1.74
SHR3	YDL212W	NGL3	Q03210	505 aa		4.18	□□□□□ -1.74
SHR3	YDL212W	PRE8	P23639	250 aa		4.17	□□□□□ -1.74
SHR3	YDL212W	IMG1	P25626	169 aa		4.17	□□□□□ -1.74
SHR3	YDL212W	SSH4	P32343	579 aa		4.17	□□□□□ -1.74
SHR3	YDL212W	CCT6	P39079	546 aa		4.17	□□□□□ -1.74
SHR3	YDL212W	ETT1	Q08421	412 aa	Known RBP	4.17	□□□□□ -1.74
SHR3	YDL212W	NCE102	Q12207	173 aa	RIP-Chip data	4.17	□□□□□ -1.74	not detected
SHR3	YDL212W	MF(ALPHA)1	P01149	165 aa		4.16	□□□□□ -1.74
SHR3	YDL212W	RPL15A	P05748	204 aa	Known RBP	4.16	□□□□□ -1.74
SHR3	YDL212W	YIH1	P25637	258 aa		4.16	□□□□□ -1.74
SHR3	YDL212W	CMK1	P27466	446 aa	Known RBP	4.16	□□□□□ -1.74
SHR3	YDL212W	SSE2	P32590	693 aa	Known RBP	4.16	□□□□□ -1.74
SHR3	YDL212W	DUO1	P53168	247 aa	Known RBP	4.16	□□□□□ -1.74
SHR3	YDL212W	YMR018W	Q04364	514 aa		4.16	□□□□□ -1.74
SHR3	YDL212W	SCW10	Q04951	389 aa		4.16	□□□□□ -1.74
SHR3	YDL212W	LUC7	Q07508	261 aa	Predicted RBP	4.16	□□□□□ -1.74
SHR3	YDL212W	YEH2	Q07950	538 aa		4.16	□□□□□ -1.74
SHR3	YDL212W	SEC62	P21825	274 aa		4.15	□□□□□ -1.75
SHR3	YDL212W	PRO3	P32263	286 aa	Known RBP	4.15	□□□□□ -1.75
SHR3	YDL212W	SIP2	P34164	415 aa	Known RBP	4.15	□□□□□ -1.75
SHR3	YDL212W	TIF3	P34167	436 aa	Known RBP	4.15	□□□□□ -1.75
SHR3	YDL212W	RPL32	P38061	130 aa	Known RBP	4.15	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 83.3 ms