RNA–Protein interactions for RNA: ENSMUST00000004430.13

Clcn3-201, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,175 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-201ENSMUST00000004430 Prm2P07978 107 aa6.36□□□□□ -1.39
Clcn3-201ENSMUST00000004430 Krtap19-5O08632 62 aa6.34□□□□□ -1.39
Clcn3-201ENSMUST00000004430 Lrp1Q91ZX7 4545 aaKnown RBP6.31□□□□□ -1.4
Clcn3-201ENSMUST00000004430 Gm10318A0A1W2P728 225 aa6.29□□□□□ -1.4
Clcn3-201ENSMUST00000004430 Gm9112A2AI92 75 aa6.29□□□□□ -1.4
Clcn3-201ENSMUST00000004430 Gm17416Q30KP4 66 aa6.25□□□□□ -1.41
Clcn3-201ENSMUST00000004430 2210017I01RikA0A0A6YVV1 95 aa6.22□□□□□ -1.41
Clcn3-201ENSMUST00000004430 Pkhd1l1Q80ZA4 4249 aa6.18□□□□□ -1.42
Clcn3-201ENSMUST00000004430 Ryr2E9Q401 4966 aaKnown RBP6.18□□□□□ -1.42
Clcn3-201ENSMUST00000004430 Krtap3-1A2A591 98 aa6.17□□□□□ -1.42
Clcn3-201ENSMUST00000004430 Vps13bQ80TY5 3993 aa6.15□□□□□ -1.43
Clcn3-201ENSMUST00000004430 Fat3Q8BNA6 4555 aa6.14□□□□□ -1.43
Clcn3-201ENSMUST00000004430 Ryr1E9PZQ0 5035 aa6.12□□□□□ -1.43
Clcn3-201ENSMUST00000004430 Kmt2cQ8BRH4 4903 aa6.12□□□□□ -1.43
Clcn3-201ENSMUST00000004430 Gm40193A0A1B0GT39 78 aa6.1□□□□□ -1.43
Clcn3-201ENSMUST00000004430 Crct1Q6PAI5 102 aa6.09□□□□□ -1.44
Clcn3-201ENSMUST00000004430 Krtap13-1Q8K198 168 aa6.09□□□□□ -1.44
Clcn3-201ENSMUST00000004430 Mycbp2Q7TPH6 4711 aa6.07□□□□□ -1.44
Clcn3-201ENSMUST00000004430 Abca13Q5SSE9 5034 aa6.03□□□□□ -1.44
Clcn3-201ENSMUST00000004430 Dnah8Q91XQ0 4731 aa6.02□□□□□ -1.45
Clcn3-201ENSMUST00000004430 Tnp1P10856 55 aa5.96□□□□□ -1.45
Clcn3-201ENSMUST00000004430 Gm18596A0A1W2P860 280 aa5.96□□□□□ -1.46
Clcn3-201ENSMUST00000004430 Kiaa1109A2AAE1 5005 aa5.9□□□□□ -1.47
Clcn3-201ENSMUST00000004430 Gm17402F6Z0L5 76 aa5.89□□□□□ -1.47
Clcn3-201ENSMUST00000004430 Herc2Q4U2R1 4836 aa5.86□□□□□ -1.47
Clcn3-201ENSMUST00000004430 Krtap7-1Q9D3I6 87 aa5.84□□□□□ -1.47
Clcn3-201ENSMUST00000004430 Gm19668J3QMD1 248 aa5.82□□□□□ -1.48
Clcn3-201ENSMUST00000004430 Gm19402J3QJV4 266 aa5.81□□□□□ -1.48
Clcn3-201ENSMUST00000004430 HydinQ80W93 5154 aa5.78□□□□□ -1.48
Clcn3-201ENSMUST00000004430 Lrp2A2ARV4 4660 aa5.76□□□□□ -1.49
Clcn3-201ENSMUST00000004430 Dnhd1D3Z2X2 4750 aa5.71□□□□□ -1.5
Clcn3-201ENSMUST00000004430 Lce1mQ9CR91 182 aa5.71□□□□□ -1.5
Clcn3-201ENSMUST00000004430 Birc6O88738 4882 aa5.71□□□□□ -1.5
Clcn3-201ENSMUST00000004430 Sprr2a3Q4KL71 83 aa5.6□□□□□ -1.51
Clcn3-201ENSMUST00000004430 Sprr2a1Q9CQK8 83 aa5.6□□□□□ -1.51
Clcn3-201ENSMUST00000004430 Krtap1-5A2A590 122 aa5.59□□□□□ -1.51
Clcn3-201ENSMUST00000004430 PcloQ9QYX7 5068 aa5.51□□□□□ -1.53
Clcn3-201ENSMUST00000004430 Krtap16-3Q8C1I6 86 aa5.49□□□□□ -1.53
Clcn3-201ENSMUST00000004430 Krtap19-1Q925H2 87 aa5.4□□□□□ -1.55
Clcn3-201ENSMUST00000004430 LorP18165 486 aa5.4□□□□□ -1.55
Clcn3-201ENSMUST00000004430 Krtap1-4Q3V2D6 188 aa5.4□□□□□ -1.55
Clcn3-201ENSMUST00000004430 Krtap19-3Q925H6 87 aa5.39□□□□□ -1.55
Clcn3-201ENSMUST00000004430 Prm1P02319 51 aa5.36□□□□□ -1.55
Clcn3-201ENSMUST00000004430 Herc1E9PZP8 4859 aa5.33□□□□□ -1.56
Clcn3-201ENSMUST00000004430 Gm7735D3YX18 52 aa5.25□□□□□ -1.57
Clcn3-201ENSMUST00000004430 Krtap19-9aF8WH65 55 aa5.24□□□□□ -1.57
Clcn3-201ENSMUST00000004430 Krtap12-1Q9Z287 130 aa5.19□□□□□ -1.58
Clcn3-201ENSMUST00000004430 Ubr4A2AN08 5180 aa5.16□□□□□ -1.58
Clcn3-201ENSMUST00000004430 ZanO88799 5376 aa5.16□□□□□ -1.58
Clcn3-201ENSMUST00000004430 Krtap1-3A2A588 173 aa5.15□□□□□ -1.58
Clcn3-201ENSMUST00000004430 Ush2AQ2QI47 5193 aa5.13□□□□□ -1.59
Clcn3-201ENSMUST00000004430 4932415D10RikA0A1W2P6U8 4986 aa5.09□□□□□ -1.59
Clcn3-201ENSMUST00000004430 Lce1jD3YUU5 139 aa5.08□□□□□ -1.6
Clcn3-201ENSMUST00000004430 Gm9789Q8BIG3 52 aa5.07□□□□□ -1.6
Clcn3-201ENSMUST00000004430 4933428G20RikQ9D3X4 101 aa5.07□□□□□ -1.6
Clcn3-201ENSMUST00000004430 Hmcn2A2AJ76 5100 aa5.06□□□□□ -1.6
Clcn3-201ENSMUST00000004430 Krtap19-9bQ99NG9 58 aa5.06□□□□□ -1.6
Clcn3-201ENSMUST00000004430 Fat4Q2PZL6 4981 aa5.06□□□□□ -1.6
Clcn3-201ENSMUST00000004430 Gm6358A0A087WPH4 74 aa5□□□□□ -1.61
Clcn3-201ENSMUST00000004430 Sprr2kO70562 68 aa4.96□□□□□ -1.62
Clcn3-201ENSMUST00000004430 Krtap9-5A2A5X3 358 aa4.87□□□□□ -1.63
Clcn3-201ENSMUST00000004430 Krtap8-1O08633 61 aa4.87□□□□□ -1.63
Clcn3-201ENSMUST00000004430 Rnf213E9Q555 5152 aaKnown RBP4.87□□□□□ -1.63
Clcn3-201ENSMUST00000004430 Krtap17-1A2A5X6 109 aa4.86□□□□□ -1.63
Clcn3-201ENSMUST00000004430 Mdn1A2ANY6 5589 aaKnown RBP4.82□□□□□ -1.64
Clcn3-201ENSMUST00000004430 Krtap19-2Q925I0 141 aa4.79□□□□□ -1.64
Clcn3-201ENSMUST00000004430 Gm10061D3Z714 54 aa4.75□□□□□ -1.65
Clcn3-201ENSMUST00000004430 2310046K23RikA0A0A6YVW6 87 aa4.75□□□□□ -1.65
Clcn3-201ENSMUST00000004430 Lce1iQ9D6P5 149 aa4.74□□□□□ -1.65
Clcn3-201ENSMUST00000004430 Gm11569B1AQB1 180 aa4.72□□□□□ -1.65
Clcn3-201ENSMUST00000004430 Krtap4-2B1AQ85 167 aa4.71□□□□□ -1.66
Clcn3-201ENSMUST00000004430 Lce1a2Q9D1K4 149 aa4.7□□□□□ -1.66
Clcn3-201ENSMUST00000004430 Syne1Q6ZWR6 8799 aa4.69□□□□□ -1.66
Clcn3-201ENSMUST00000004430 Sprr2gO70558 76 aa4.67□□□□□ -1.66
Clcn3-201ENSMUST00000004430 SspoQ8CG65 4998 aa4.63□□□□□ -1.67
Clcn3-201ENSMUST00000004430 Gm10272F7CZ33 110 aa4.63□□□□□ -1.67
Clcn3-201ENSMUST00000004430 Mt2P02798 61 aa4.62□□□□□ -1.67
Clcn3-201ENSMUST00000004430 Krtap9-3Q3V2C1 136 aa4.58□□□□□ -1.68
Clcn3-201ENSMUST00000004430 Lce1gQ9D195 139 aa4.57□□□□□ -1.68
Clcn3-201ENSMUST00000004430 Gm10100J3QK64 120 aa4.53□□□□□ -1.68
Clcn3-201ENSMUST00000004430 Lce1hQ9D6R3 140 aa4.49□□□□□ -1.69
Clcn3-201ENSMUST00000004430 Krtap4-6Q3V4B7 195 aa4.45□□□□□ -1.7
Clcn3-201ENSMUST00000004430 Krtap4-1Q3UUY3 169 aa4.44□□□□□ -1.7
Clcn3-201ENSMUST00000004430 Muc16A0A140LJ72 8478 aa4.43□□□□□ -1.7
Clcn3-201ENSMUST00000004430 Lce3bQ9CQM7 98 aa4.43□□□□□ -1.7
Clcn3-201ENSMUST00000004430 Gm38119A0A0A6YX29 146 aa4.42□□□□□ -1.7
Clcn3-201ENSMUST00000004430 Krtap22-2J3QNX6 67 aa4.42□□□□□ -1.7
Clcn3-201ENSMUST00000004430 Muc5bE9Q5I3 4800 aa4.42□□□□□ -1.7
Clcn3-201ENSMUST00000004430 Gm11596B1AQB0 205 aa4.37□□□□□ -1.71
Clcn3-201ENSMUST00000004430 Gm10142J3KMP7 120 aa4.37□□□□□ -1.71
Clcn3-201ENSMUST00000004430 Gm11562A0PK51 136 aa4.33□□□□□ -1.72
Clcn3-201ENSMUST00000004430 Mt4P47945 62 aa4.3□□□□□ -1.72
Clcn3-201ENSMUST00000004430 Lce3cQ91V05 98 aa4.3□□□□□ -1.72
Clcn3-201ENSMUST00000004430 Lce1dQ9D731 133 aa4.28□□□□□ -1.73
Clcn3-201ENSMUST00000004430 Syne2Q6ZWQ0 6874 aaKnown RBP4.26□□□□□ -1.73
Clcn3-201ENSMUST00000004430 Fsip2A2ARZ3 6995 aa4.23□□□□□ -1.73
Clcn3-201ENSMUST00000004430 Gm11564A2A4L9 201 aa4.22□□□□□ -1.73
Clcn3-201ENSMUST00000004430 Gm11563B1AQ90 168 aa4.22□□□□□ -1.73
Clcn3-201ENSMUST00000004430 Gm11595B1AQA7 289 aa4.22□□□□□ -1.73
Clcn3-201ENSMUST00000004430 Krtap4-8B1AQA8 209 aa4.22□□□□□ -1.73
Retrieved 100 of 22,080 RNA–protein pairs in 11 ms