RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Glrp1E9Q9S8 174 aa9.39□□□□□ -0.91
Trim56-201ENSMUST00000054384 Gm9970F6ZED4 185 aa9.39□□□□□ -0.91
Trim56-201ENSMUST00000054384 Sec61gP60060 68 aa9.39□□□□□ -0.91
Trim56-201ENSMUST00000054384 Ppp1r32Q148A4 427 aa9.39□□□□□ -0.91
Trim56-201ENSMUST00000054384 Q8C708 225 aa9.39□□□□□ -0.91
Trim56-201ENSMUST00000054384 Prok2Q9QXU7 128 aa9.38□□□□□ -0.91
Trim56-201ENSMUST00000054384 Igkv12-89A0A0G2JGW8 112 aa9.38□□□□□ -0.91
Trim56-201ENSMUST00000054384 Igkv6-15A0A140T8M5 115 aa9.38□□□□□ -0.91
Trim56-201ENSMUST00000054384 Gm37988J3QM41 62 aa9.38□□□□□ -0.91
Trim56-201ENSMUST00000054384 Cox7cP17665 63 aa9.38□□□□□ -0.91
Trim56-201ENSMUST00000054384 Trav4d-3A0A075B625 110 aa9.38□□□□□ -0.91
Trim56-201ENSMUST00000054384 Spag11Q8K4N2 71 aa9.38□□□□□ -0.91
Trim56-201ENSMUST00000054384 Zc2hc1aQ8BJH1 324 aa9.38□□□□□ -0.91
Trim56-201ENSMUST00000054384 1700012A03RikQ9DAF1 130 aa9.38□□□□□ -0.91
Trim56-201ENSMUST00000054384 Trbv14A0A140T8L9 115 aa9.38□□□□□ -0.91
Trim56-201ENSMUST00000054384 Ang3P97802 145 aa9.38□□□□□ -0.91
Trim56-201ENSMUST00000054384 Tnfrsf26P83626 204 aa9.37□□□□□ -0.91
Trim56-201ENSMUST00000054384 Atp5eP56382 52 aa9.37□□□□□ -0.91
Trim56-201ENSMUST00000054384 B9d2Q3UK10 175 aa9.37□□□□□ -0.91
Trim56-201ENSMUST00000054384 NpbQ8K4P1 119 aa9.37□□□□□ -0.91
Trim56-201ENSMUST00000054384 Atp6v0e2Q91XE7 81 aa9.37□□□□□ -0.91
Trim56-201ENSMUST00000054384 Tns1E9Q0S6 1888 aaKnown RBP9.37□□□□□ -0.91
Trim56-201ENSMUST00000054384 Trav9d-3A0A075B695 113 aa9.37□□□□□ -0.91
Trim56-201ENSMUST00000054384 Gm3618D3Z4P5 127 aa9.37□□□□□ -0.91
Trim56-201ENSMUST00000054384 3110082J24RikF6Z6Z2 108 aa9.37□□□□□ -0.91
Trim56-201ENSMUST00000054384 Pcsk5Q04592 1877 aa9.37□□□□□ -0.91
Trim56-201ENSMUST00000054384 Vpreb2P13373 142 aa9.36□□□□□ -0.91
Trim56-201ENSMUST00000054384 Gtsf1Q9DAN6 167 aa9.36□□□□□ -0.91
Trim56-201ENSMUST00000054384 CrygdP04342 174 aa9.36□□□□□ -0.91
Trim56-201ENSMUST00000054384 Ccl24Q9JKC0 119 aa9.36□□□□□ -0.91
Trim56-201ENSMUST00000054384 Rpl18aP62717 176 aaKnown RBP9.36□□□□□ -0.91
Trim56-201ENSMUST00000054384 Gm10518F6UQQ9 182 aa9.36□□□□□ -0.91
Trim56-201ENSMUST00000054384 Trav11A0A0B4J1J9 114 aa9.36□□□□□ -0.91
Trim56-201ENSMUST00000054384 Gm5129F6YHA9 99 aa9.36□□□□□ -0.91
Trim56-201ENSMUST00000054384 Nav3Q80TN7 2359 aa9.36□□□□□ -0.91
Trim56-201ENSMUST00000054384 Defb12Q8K4N3 78 aa9.36□□□□□ -0.91
Trim56-201ENSMUST00000054384 Lhfpl1Q80SV1 220 aa9.35□□□□□ -0.91
Trim56-201ENSMUST00000054384 LoxP28301 411 aa9.35□□□□□ -0.91
Trim56-201ENSMUST00000054384 Cox7a1P56392 80 aa9.35□□□□□ -0.91
Trim56-201ENSMUST00000054384 Q99M08 65 aa9.35□□□□□ -0.91
Trim56-201ENSMUST00000054384 Trav9-2A0A075B647 113 aa9.35□□□□□ -0.91
Trim56-201ENSMUST00000054384 Trav9-4A0A0B4J1K2 113 aa9.35□□□□□ -0.91
Trim56-201ENSMUST00000054384 AngP21570 145 aa9.35□□□□□ -0.91
Trim56-201ENSMUST00000054384 Ube2aQ9Z255 152 aa9.35□□□□□ -0.91
Trim56-201ENSMUST00000054384 Gm17472A0A075B683 117 aa9.34□□□□□ -0.91
Trim56-201ENSMUST00000054384 Gm37389A0A0A6YW05 95 aa9.34□□□□□ -0.91
Trim56-201ENSMUST00000054384 9430069I07RikQ9CX21 111 aa9.34□□□□□ -0.91
Trim56-201ENSMUST00000054384 Ighv1-77A0A0G2JGS9 117 aa9.34□□□□□ -0.91
Trim56-201ENSMUST00000054384 Gm10295Q8CCF3 114 aa9.34□□□□□ -0.91
Trim56-201ENSMUST00000054384 P01745 121 aa9.34□□□□□ -0.91
Trim56-201ENSMUST00000054384 Loxl1P97873 607 aa9.34□□□□□ -0.91
Trim56-201ENSMUST00000054384 Igkv3-10A0A0G2JGN0 119 aa9.34□□□□□ -0.91
Trim56-201ENSMUST00000054384 Fgf6P21658 208 aa9.34□□□□□ -0.91
Trim56-201ENSMUST00000054384 Adamts20P59511 1906 aa9.34□□□□□ -0.91
Trim56-201ENSMUST00000054384 NbasE9Q411 2356 aa9.34□□□□□ -0.91
Trim56-201ENSMUST00000054384 Trav7-6A0A075B640 112 aa9.33□□□□□ -0.92
Trim56-201ENSMUST00000054384 Igkv3-4A0A140T8Q4 119 aa9.33□□□□□ -0.92
Trim56-201ENSMUST00000054384 Foxi2Q3I5G5 311 aa9.33□□□□□ -0.92
Trim56-201ENSMUST00000054384 Igkv1-88A0A140T8N1 120 aa9.33□□□□□ -0.92
Trim56-201ENSMUST00000054384 Kiaa1549Q68FD9 1940 aa9.33□□□□□ -0.92
Trim56-201ENSMUST00000054384 AcacbE9Q4Z2 2448 aa9.33□□□□□ -0.92
Trim56-201ENSMUST00000054384 Gm10735Q3US96 136 aa9.33□□□□□ -0.92
Trim56-201ENSMUST00000054384 Ighv1-52A0A0A6YXC3 117 aa9.33□□□□□ -0.92
Trim56-201ENSMUST00000054384 Smim20D3Z7Q2 69 aa9.33□□□□□ -0.92
Trim56-201ENSMUST00000054384 Psmb11Q8BG41 302 aa9.33□□□□□ -0.92
Trim56-201ENSMUST00000054384 Col4a5Q63ZW6 1691 aa9.32□□□□□ -0.92
Trim56-201ENSMUST00000054384 Fstl3Q9EQC7 256 aa9.32□□□□□ -0.92
Trim56-201ENSMUST00000054384 Timm17aQ9Z0V8 171 aa9.32□□□□□ -0.92
Trim56-201ENSMUST00000054384 Vpreb3D3Z6J4 130 aa9.32□□□□□ -0.92
Trim56-201ENSMUST00000054384 Tnfrsf13bQ9ET35 249 aa9.32□□□□□ -0.92
Trim56-201ENSMUST00000054384 Naa38Q9D2U5 125 aa9.32□□□□□ -0.92
Trim56-201ENSMUST00000054384 Pou2af1Q64693 256 aa9.32□□□□□ -0.92
Trim56-201ENSMUST00000054384 Q08AU9 97 aa9.31□□□□□ -0.92
Trim56-201ENSMUST00000054384 Klk12B2RVZ0 247 aa9.31□□□□□ -0.92
Trim56-201ENSMUST00000054384 Camk2n2Q78WH7 79 aa9.31□□□□□ -0.92
Trim56-201ENSMUST00000054384 Fam110aQ8R184 296 aa9.31□□□□□ -0.92
Trim56-201ENSMUST00000054384 UrahQ9CRB3 118 aa9.31□□□□□ -0.92
Trim56-201ENSMUST00000054384 Nxph4G3X9N5 304 aa9.31□□□□□ -0.92
Trim56-201ENSMUST00000054384 1500011B03RikQ3TTH7 73 aa9.31□□□□□ -0.92
Trim56-201ENSMUST00000054384 Trav9n-2A0A0G2JDP3 113 aa9.31□□□□□ -0.92
Trim56-201ENSMUST00000054384 Mrpl35Q9CQL6 188 aa9.31□□□□□ -0.92
Trim56-201ENSMUST00000054384 Odf1Q61999 247 aa9.3□□□□□ -0.92
Trim56-201ENSMUST00000054384 Vsig4F6TUL9 280 aa9.3□□□□□ -0.92
Trim56-201ENSMUST00000054384 OdaphJ3QNT8 126 aa9.3□□□□□ -0.92
Trim56-201ENSMUST00000054384 GrnP28798 589 aaKnown RBP9.3□□□□□ -0.92
Trim56-201ENSMUST00000054384 4933414I15RikQ9D4D5 133 aa9.3□□□□□ -0.92
Trim56-201ENSMUST00000054384 Igkv2-109A0A075B5K6 120 aa9.29□□□□□ -0.92
Trim56-201ENSMUST00000054384 Atp5g3P56384 141 aa9.29□□□□□ -0.92
Trim56-201ENSMUST00000054384 Atp5g1Q9CR84 136 aa9.29□□□□□ -0.92
Trim56-201ENSMUST00000054384 Gm17577J3QNF7 156 aa9.29□□□□□ -0.92
Trim56-201ENSMUST00000054384 Cfap126Q6P8X9 189 aa9.29□□□□□ -0.92
Trim56-201ENSMUST00000054384 Gm21994F6T2D2 329 aa9.29□□□□□ -0.92
Trim56-201ENSMUST00000054384 Ighv1-12A0A0A6YXJ9 117 aa9.29□□□□□ -0.92
Trim56-201ENSMUST00000054384 C920008G01RikA0A0B4J1N1 112 aa9.29□□□□□ -0.92
Trim56-201ENSMUST00000054384 Ebi3O35228 228 aa9.29□□□□□ -0.92
Trim56-201ENSMUST00000054384 P01750 117 aa9.28□□□□□ -0.92
Trim56-201ENSMUST00000054384 Gata3P23772 443 aa9.28□□□□□ -0.92
Trim56-201ENSMUST00000054384 Trav13d-4A0A0G2JFX3 110 aa9.28□□□□□ -0.92
Trim56-201ENSMUST00000054384 Fhl1P97447 280 aaKnown RBP9.28□□□□□ -0.92
Trim56-201ENSMUST00000054384 Dazap2Q9DCP9 168 aa9.28□□□□□ -0.92
Retrieved 100 of 22,080 RNA–protein pairs in 96.5 ms