Protein–RNA interactions for Protein: A0A075B640

Trav7-6, T cell receptor alpha variable 7-6 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav7-6A0A075B640 Gm25239-201ENSMUST00000174915 86 ntBASIC24.19■■□□□ 1.46
Trav7-6A0A075B640 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Trav7-6A0A075B640 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trav7-6A0A075B640 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
Trav7-6A0A075B640 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trav7-6A0A075B640 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Trav7-6A0A075B640 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Trav7-6A0A075B640 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trav7-6A0A075B640 Psd-208ENSMUST00000224556 2034 ntBASIC21.81■■□□□ 1.08
Trav7-6A0A075B640 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trav7-6A0A075B640 Gm15042-201ENSMUST00000120212 883 ntBASIC21.65■■□□□ 1.06
Trav7-6A0A075B640 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trav7-6A0A075B640 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trav7-6A0A075B640 Gm15045-201ENSMUST00000117359 883 ntBASIC21.21■□□□□ 0.99
Trav7-6A0A075B640 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC21.13■□□□□ 0.97
Trav7-6A0A075B640 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trav7-6A0A075B640 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trav7-6A0A075B640 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trav7-6A0A075B640 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trav7-6A0A075B640 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trav7-6A0A075B640 Gm24109-201ENSMUST00000175489 103 ntBASIC20.7■□□□□ 0.9
Trav7-6A0A075B640 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trav7-6A0A075B640 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trav7-6A0A075B640 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trav7-6A0A075B640 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trav7-6A0A075B640 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trav7-6A0A075B640 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav7-6A0A075B640 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trav7-6A0A075B640 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC20.51■□□□□ 0.87
Trav7-6A0A075B640 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trav7-6A0A075B640 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
Trav7-6A0A075B640 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC20.38■□□□□ 0.85
Trav7-6A0A075B640 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trav7-6A0A075B640 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trav7-6A0A075B640 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trav7-6A0A075B640 Gm23366-201ENSMUST00000175022 89 ntBASIC20.31■□□□□ 0.84
Trav7-6A0A075B640 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trav7-6A0A075B640 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trav7-6A0A075B640 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trav7-6A0A075B640 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trav7-6A0A075B640 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav7-6A0A075B640 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav7-6A0A075B640 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav7-6A0A075B640 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Trav7-6A0A075B640 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC20.04■□□□□ 0.8
Trav7-6A0A075B640 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC20.03■□□□□ 0.8
Trav7-6A0A075B640 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav7-6A0A075B640 Gm10524-201ENSMUST00000181931 1893 ntBASIC19.97■□□□□ 0.79
Trav7-6A0A075B640 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
Trav7-6A0A075B640 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trav7-6A0A075B640 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trav7-6A0A075B640 AC153911.1-202ENSMUST00000218534 1034 ntBASIC19.9■□□□□ 0.78
Trav7-6A0A075B640 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trav7-6A0A075B640 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Trav7-6A0A075B640 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trav7-6A0A075B640 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Trav7-6A0A075B640 Gm42596-201ENSMUST00000196305 1958 ntBASIC19.75■□□□□ 0.75
Trav7-6A0A075B640 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav7-6A0A075B640 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC19.62■□□□□ 0.73
Trav7-6A0A075B640 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav7-6A0A075B640 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trav7-6A0A075B640 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav7-6A0A075B640 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trav7-6A0A075B640 CT025624.2-201ENSMUST00000223609 1909 ntBASIC19.49■□□□□ 0.71
Trav7-6A0A075B640 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Trav7-6A0A075B640 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav7-6A0A075B640 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav7-6A0A075B640 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trav7-6A0A075B640 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav7-6A0A075B640 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav7-6A0A075B640 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav7-6A0A075B640 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Trav7-6A0A075B640 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav7-6A0A075B640 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Trav7-6A0A075B640 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Trav7-6A0A075B640 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
Trav7-6A0A075B640 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trav7-6A0A075B640 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trav7-6A0A075B640 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav7-6A0A075B640 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC19.15■□□□□ 0.66
Trav7-6A0A075B640 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav7-6A0A075B640 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trav7-6A0A075B640 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC19.12■□□□□ 0.65
Trav7-6A0A075B640 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav7-6A0A075B640 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav7-6A0A075B640 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Trav7-6A0A075B640 Gm27325-201ENSMUST00000175467 74 ntBASIC19.04■□□□□ 0.64
Trav7-6A0A075B640 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav7-6A0A075B640 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav7-6A0A075B640 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav7-6A0A075B640 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trav7-6A0A075B640 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav7-6A0A075B640 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav7-6A0A075B640 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Trav7-6A0A075B640 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC18.91■□□□□ 0.62
Trav7-6A0A075B640 Gm25238-201ENSMUST00000174914 89 ntBASIC18.91■□□□□ 0.62
Trav7-6A0A075B640 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav7-6A0A075B640 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
Trav7-6A0A075B640 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trav7-6A0A075B640 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 14.4 ms