Protein–RNA interactions for Protein: A0A075B647

Trav9-2, T cell receptor alpha variable 9-2 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9-2A0A075B647 Gm25239-201ENSMUST00000174915 86 ntBASIC27.77■■■□□ 2.04
Trav9-2A0A075B647 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Trav9-2A0A075B647 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Trav9-2A0A075B647 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Trav9-2A0A075B647 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Trav9-2A0A075B647 Gm15042-201ENSMUST00000120212 883 ntBASIC24.56■■□□□ 1.52
Trav9-2A0A075B647 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
Trav9-2A0A075B647 Gm15045-201ENSMUST00000117359 883 ntBASIC24.04■■□□□ 1.44
Trav9-2A0A075B647 Gm24109-201ENSMUST00000175489 103 ntBASIC23.91■■□□□ 1.42
Trav9-2A0A075B647 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trav9-2A0A075B647 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trav9-2A0A075B647 Psd-208ENSMUST00000224556 2034 ntBASIC23.54■■□□□ 1.36
Trav9-2A0A075B647 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Trav9-2A0A075B647 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC23.36■■□□□ 1.33
Trav9-2A0A075B647 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trav9-2A0A075B647 Gm23366-201ENSMUST00000175022 89 ntBASIC23.23■■□□□ 1.31
Trav9-2A0A075B647 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Trav9-2A0A075B647 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trav9-2A0A075B647 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Trav9-2A0A075B647 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Trav9-2A0A075B647 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Trav9-2A0A075B647 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
Trav9-2A0A075B647 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
Trav9-2A0A075B647 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trav9-2A0A075B647 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Trav9-2A0A075B647 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Trav9-2A0A075B647 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC22.74■■□□□ 1.23
Trav9-2A0A075B647 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Trav9-2A0A075B647 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Trav9-2A0A075B647 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
Trav9-2A0A075B647 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Trav9-2A0A075B647 AC153911.1-202ENSMUST00000218534 1034 ntBASIC22.57■■□□□ 1.2
Trav9-2A0A075B647 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC22.48■■□□□ 1.19
Trav9-2A0A075B647 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trav9-2A0A075B647 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Trav9-2A0A075B647 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trav9-2A0A075B647 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trav9-2A0A075B647 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trav9-2A0A075B647 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC22.15■■□□□ 1.14
Trav9-2A0A075B647 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Trav9-2A0A075B647 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC22.06■■□□□ 1.12
Trav9-2A0A075B647 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Trav9-2A0A075B647 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
Trav9-2A0A075B647 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav9-2A0A075B647 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trav9-2A0A075B647 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21.89■■□□□ 1.09
Trav9-2A0A075B647 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trav9-2A0A075B647 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trav9-2A0A075B647 Gm25238-201ENSMUST00000174914 89 ntBASIC21.81■■□□□ 1.08
Trav9-2A0A075B647 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC21.77■■□□□ 1.08
Trav9-2A0A075B647 Gm10524-201ENSMUST00000181931 1893 ntBASIC21.76■■□□□ 1.07
Trav9-2A0A075B647 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trav9-2A0A075B647 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trav9-2A0A075B647 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trav9-2A0A075B647 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trav9-2A0A075B647 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trav9-2A0A075B647 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trav9-2A0A075B647 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trav9-2A0A075B647 Gm27325-201ENSMUST00000175467 74 ntBASIC21.54■■□□□ 1.04
Trav9-2A0A075B647 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trav9-2A0A075B647 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC21.49■■□□□ 1.03
Trav9-2A0A075B647 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trav9-2A0A075B647 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC21.46■■□□□ 1.03
Trav9-2A0A075B647 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC21.44■■□□□ 1.02
Trav9-2A0A075B647 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trav9-2A0A075B647 CT025624.2-201ENSMUST00000223609 1909 ntBASIC21.4■■□□□ 1.02
Trav9-2A0A075B647 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Trav9-2A0A075B647 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
Trav9-2A0A075B647 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
Trav9-2A0A075B647 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
Trav9-2A0A075B647 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trav9-2A0A075B647 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Trav9-2A0A075B647 Gm42596-201ENSMUST00000196305 1958 ntBASIC21.3■■□□□ 1
Trav9-2A0A075B647 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Trav9-2A0A075B647 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trav9-2A0A075B647 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav9-2A0A075B647 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC21.2■□□□□ 0.98
Trav9-2A0A075B647 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trav9-2A0A075B647 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC21.16■□□□□ 0.98
Trav9-2A0A075B647 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trav9-2A0A075B647 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trav9-2A0A075B647 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC21.04■□□□□ 0.96
Trav9-2A0A075B647 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21.02■□□□□ 0.96
Trav9-2A0A075B647 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav9-2A0A075B647 Rab21-202ENSMUST00000218831 843 ntBASIC20.98■□□□□ 0.95
Trav9-2A0A075B647 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trav9-2A0A075B647 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
Trav9-2A0A075B647 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trav9-2A0A075B647 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trav9-2A0A075B647 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trav9-2A0A075B647 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trav9-2A0A075B647 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trav9-2A0A075B647 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC20.88■□□□□ 0.93
Trav9-2A0A075B647 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Trav9-2A0A075B647 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trav9-2A0A075B647 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC20.8■□□□□ 0.92
Trav9-2A0A075B647 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trav9-2A0A075B647 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Trav9-2A0A075B647 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trav9-2A0A075B647 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC20.76■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms