Protein–RNA interactions for Protein: A0A075B625

Trav4d-3, T cell receptor alpha variable 4D-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4d-3A0A075B625 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Trav4d-3A0A075B625 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
Trav4d-3A0A075B625 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trav4d-3A0A075B625 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trav4d-3A0A075B625 Psd-208ENSMUST00000224556 2034 ntBASIC22.18■■□□□ 1.14
Trav4d-3A0A075B625 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trav4d-3A0A075B625 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trav4d-3A0A075B625 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav4d-3A0A075B625 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav4d-3A0A075B625 Gm25239-201ENSMUST00000174915 86 ntBASIC21.16■□□□□ 0.98
Trav4d-3A0A075B625 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav4d-3A0A075B625 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trav4d-3A0A075B625 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trav4d-3A0A075B625 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trav4d-3A0A075B625 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trav4d-3A0A075B625 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trav4d-3A0A075B625 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trav4d-3A0A075B625 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Trav4d-3A0A075B625 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trav4d-3A0A075B625 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC20.3■□□□□ 0.84
Trav4d-3A0A075B625 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trav4d-3A0A075B625 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trav4d-3A0A075B625 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trav4d-3A0A075B625 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav4d-3A0A075B625 Gm42596-201ENSMUST00000196305 1958 ntBASIC20.17■□□□□ 0.82
Trav4d-3A0A075B625 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
Trav4d-3A0A075B625 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC20.11■□□□□ 0.81
Trav4d-3A0A075B625 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav4d-3A0A075B625 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trav4d-3A0A075B625 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav4d-3A0A075B625 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC19.92■□□□□ 0.78
Trav4d-3A0A075B625 Gm10524-201ENSMUST00000181931 1893 ntBASIC19.86■□□□□ 0.77
Trav4d-3A0A075B625 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trav4d-3A0A075B625 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trav4d-3A0A075B625 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Trav4d-3A0A075B625 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trav4d-3A0A075B625 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trav4d-3A0A075B625 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trav4d-3A0A075B625 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Trav4d-3A0A075B625 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trav4d-3A0A075B625 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC19.69■□□□□ 0.74
Trav4d-3A0A075B625 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trav4d-3A0A075B625 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trav4d-3A0A075B625 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC19.59■□□□□ 0.73
Trav4d-3A0A075B625 Gm15042-201ENSMUST00000120212 883 ntBASIC19.55■□□□□ 0.72
Trav4d-3A0A075B625 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav4d-3A0A075B625 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav4d-3A0A075B625 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Trav4d-3A0A075B625 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC19.43■□□□□ 0.7
Trav4d-3A0A075B625 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav4d-3A0A075B625 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trav4d-3A0A075B625 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trav4d-3A0A075B625 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trav4d-3A0A075B625 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav4d-3A0A075B625 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trav4d-3A0A075B625 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Trav4d-3A0A075B625 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav4d-3A0A075B625 Gm15045-201ENSMUST00000117359 883 ntBASIC19.24■□□□□ 0.67
Trav4d-3A0A075B625 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav4d-3A0A075B625 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Trav4d-3A0A075B625 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trav4d-3A0A075B625 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC19.11■□□□□ 0.65
Trav4d-3A0A075B625 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav4d-3A0A075B625 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Trav4d-3A0A075B625 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav4d-3A0A075B625 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav4d-3A0A075B625 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav4d-3A0A075B625 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav4d-3A0A075B625 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav4d-3A0A075B625 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trav4d-3A0A075B625 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav4d-3A0A075B625 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Trav4d-3A0A075B625 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav4d-3A0A075B625 CT025624.2-201ENSMUST00000223609 1909 ntBASIC19■□□□□ 0.63
Trav4d-3A0A075B625 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Trav4d-3A0A075B625 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trav4d-3A0A075B625 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trav4d-3A0A075B625 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav4d-3A0A075B625 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav4d-3A0A075B625 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav4d-3A0A075B625 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav4d-3A0A075B625 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav4d-3A0A075B625 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav4d-3A0A075B625 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav4d-3A0A075B625 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav4d-3A0A075B625 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC18.76■□□□□ 0.59
Trav4d-3A0A075B625 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trav4d-3A0A075B625 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trav4d-3A0A075B625 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC18.74■□□□□ 0.59
Trav4d-3A0A075B625 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav4d-3A0A075B625 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav4d-3A0A075B625 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav4d-3A0A075B625 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav4d-3A0A075B625 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav4d-3A0A075B625 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Trav4d-3A0A075B625 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav4d-3A0A075B625 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav4d-3A0A075B625 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav4d-3A0A075B625 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Trav4d-3A0A075B625 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms