RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	SED4	P25365	1065 aa		4.68	□□□□□ -1.66
UBC8	YEL012W	COY1	P34237	679 aa		4.68	□□□□□ -1.66
UBC8	YEL012W	CCL1	P37366	393 aa		4.68	□□□□□ -1.66
UBC8	YEL012W	TDA3	P38758	523 aa		4.68	□□□□□ -1.66
UBC8	YEL012W	SSZ1	P38788	538 aa	Known RBP	4.68	□□□□□ -1.66
UBC8	YEL012W	MSS4	P38994	779 aa		4.68	□□□□□ -1.66
UBC8	YEL012W	PCI8	P40512	444 aa		4.68	□□□□□ -1.66
UBC8	YEL012W	PFA3	P42836	336 aa		4.68	□□□□□ -1.66
UBC8	YEL012W	YJR039W	P47107	1121 aa		4.68	□□□□□ -1.66
UBC8	YEL012W	ECL1	P48235	211 aa		4.68	□□□□□ -1.66
UBC8	YEL012W	PEX14	P53112	341 aa		4.68	□□□□□ -1.66
UBC8	YEL012W	RTS3	P53289	263 aa		4.68	□□□□□ -1.66
UBC8	YEL012W	BNI5	P53890	448 aa	Known RBP	4.68	□□□□□ -1.66
UBC8	YEL012W	COQ9	Q05779	260 aa		4.68	□□□□□ -1.66
UBC8	YEL012W	CDA2	Q06703	312 aa		4.68	□□□□□ -1.66
UBC8	YEL012W	KCS1	Q12494	1050 aa		4.68	□□□□□ -1.66
UBC8	YEL012W	LAA1	P39526	2014 aa		4.68	□□□□□ -1.66
UBC8	YEL012W	COX4	P04037	155 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	RPL40A	P0CH08	128 aa	Known RBP	4.67	□□□□□ -1.66
UBC8	YEL012W	RPL40B	P0CH09	128 aa	Known RBP	4.67	□□□□□ -1.66
UBC8	YEL012W	HCA4	P20448	770 aa	Known RBP	4.67	□□□□□ -1.66
UBC8	YEL012W	BUD2	P33314	1104 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	SEG2	P34250	1132 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	OAF3	P36023	863 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	MRPL7	P36519	292 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	FAT1	P38225	669 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	ERC1	P38767	581 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	YHR202W	P38887	602 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	SAK1	P38990	1142 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	BEM4	P39011	633 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	CCT3	P39077	534 aa	Known RBP	4.67	□□□□□ -1.66
UBC8	YEL012W	FIS1	P40515	155 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	VID28	P40547	921 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	IRC24	P40580	263 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	AVT1	P47082	602 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	ALT2	P52892	507 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	SND1	Q04007	877 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	HCR1	Q05775	265 aa	Known RBP	4.67	□□□□□ -1.66
UBC8	YEL012W	NOP12	Q08208	459 aa	Known RBP	4.67	□□□□□ -1.66
UBC8	YEL012W	YPL277C	Q08989	487 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	PKH2	Q12236	1081 aa	Known RBP	4.67	□□□□□ -1.66
UBC8	YEL012W	ZPS1	Q12512	249 aa		4.67	□□□□□ -1.66
UBC8	YEL012W	CLN3	P13365	580 aa		4.66	□□□□□ -1.66
UBC8	YEL012W	AEP2	P22136	580 aa		4.66	□□□□□ -1.66
UBC8	YEL012W	TMT1	P32643	299 aa		4.66	□□□□□ -1.66
UBC8	YEL012W	RXT2	P38255	430 aa		4.66	□□□□□ -1.66
UBC8	YEL012W	LAM5	P43560	674 aa		4.66	□□□□□ -1.66
UBC8	YEL012W	ZAP1	P47043	880 aa		4.66	□□□□□ -1.66
UBC8	YEL012W	YLR224W	Q05947	369 aa		4.66	□□□□□ -1.66
UBC8	YEL012W	MRI1	Q06489	411 aa	Known RBP	4.66	□□□□□ -1.66
UBC8	YEL012W	RXT3	Q07458	294 aa		4.66	□□□□□ -1.66
UBC8	YEL012W	NPC2	Q12408	173 aa		4.66	□□□□□ -1.66
UBC8	YEL012W	TMA7	Q3E764	64 aa	Known RBP	4.66	□□□□□ -1.66
UBC8	YEL012W	RAD50	P12753	1312 aa		4.66	□□□□□ -1.66
UBC8	YEL012W	RPP2A	P05319	106 aa	Known RBP	4.65	□□□□□ -1.67
UBC8	YEL012W	GLN3	P18494	730 aa		4.65	□□□□□ -1.67
UBC8	YEL012W	VPS1	P21576	704 aa	Known RBP	4.65	□□□□□ -1.67
UBC8	YEL012W	SWI4	P25302	1093 aa	Known RBP	4.65	□□□□□ -1.67
UBC8	YEL012W	RSA4	P25382	515 aa	Known RBP	4.65	□□□□□ -1.67
UBC8	YEL012W	HEM12	P32347	362 aa	Predicted RBP	4.65	□□□□□ -1.67
UBC8	YEL012W	HEL1	P36113	551 aa		4.65	□□□□□ -1.67
UBC8	YEL012W	GID8	P40208	455 aa		4.65	□□□□□ -1.67
UBC8	YEL012W	VHR1	P40522	640 aa		4.65	□□□□□ -1.67
UBC8	YEL012W	YGL138C	P53122	345 aa		4.65	□□□□□ -1.67
UBC8	YEL012W	MNP1	P53163	194 aa	Predicted RBP	4.65	□□□□□ -1.67
UBC8	YEL012W	CNM67	P53865	581 aa	Known RBP	4.65	□□□□□ -1.67
UBC8	YEL012W	YHM2	Q04013	314 aa		4.65	□□□□□ -1.67
UBC8	YEL012W	SMC5	Q08204	1093 aa		4.65	□□□□□ -1.67
UBC8	YEL012W	YOR352W	Q08816	343 aa		4.65	□□□□□ -1.67
UBC8	YEL012W	YOR378W	Q08902	515 aa		4.65	□□□□□ -1.67
UBC8	YEL012W	HIF1	Q12373	385 aa		4.65	□□□□□ -1.67
UBC8	YEL012W	RPS13	P05756	151 aa	Known RBP	4.64	□□□□□ -1.67
UBC8	YEL012W	SPO11	P23179	398 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	PRP22	P24384	1145 aa	Known RBP	4.64	□□□□□ -1.67
UBC8	YEL012W	SEC6	P32844	805 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	SAS3	P34218	831 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	AIM3	P38266	947 aa	Known RBP	4.64	□□□□□ -1.67
UBC8	YEL012W	BIT2	P38346	545 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	SIC1	P38634	284 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	RIM4	P38741	713 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	PLB1	P39105	664 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	PZF1	P39933	429 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	MTR3	P48240	250 aa	Predicted RBP	4.64	□□□□□ -1.67
UBC8	YEL012W	STB4	P50104	949 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	SPT20	P50875	604 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	MFM1	Q02783	413 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	ESC8	Q08119	714 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.64	□□□□□ -1.67	not detected
UBC8	YEL012W	PLP2	Q12017	286 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	SLX4	Q12098	748 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	LAS17	Q12446	633 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	RMP1	Q12530	201 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	MPD2	Q99316	277 aa		4.64	□□□□□ -1.67
UBC8	YEL012W	YLR415C	O13578	112 aa		4.63	□□□□□ -1.67
UBC8	YEL012W	SOD2	P00447	233 aa		4.63	□□□□□ -1.67
UBC8	YEL012W	PDE1	P22434	369 aa		4.63	□□□□□ -1.67
UBC8	YEL012W	HCM1	P25364	564 aa		4.63	□□□□□ -1.67
UBC8	YEL012W	SGF29	P25554	259 aa		4.63	□□□□□ -1.67
UBC8	YEL012W	KAR4	P25583	335 aa		4.63	□□□□□ -1.67
UBC8	YEL012W	SEC65	P29478	273 aa		4.63	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 28.9 ms