RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 MUC3AQ02505 3323 aa1.55□□□□□ -2.16
SCN1A-221ENST00000641996 KRTAP10-11P60412 298 aa1.55□□□□□ -2.16
SCN1A-221ENST00000641996 MT3P25713 68 aa1.54□□□□□ -2.16
SCN1A-221ENST00000641996 EPPK1P58107 5090 aaKnown RBP1.54□□□□□ -2.16
SCN1A-221ENST00000641996 CSMD1Q96PZ7 3565 aa1.54□□□□□ -2.16
SCN1A-221ENST00000641996 KRTAP13-1Q8IUC0 172 aa1.53□□□□□ -2.16
SCN1A-221ENST00000641996 CUBNO60494 3623 aa1.51□□□□□ -2.17
SCN1A-221ENST00000641996 DNAH6Q9C0G6 4158 aa1.51□□□□□ -2.17
SCN1A-221ENST00000641996 KRTAP10-1P60331 282 aa1.5□□□□□ -2.17
SCN1A-221ENST00000641996 RELNP78509 3460 aa1.5□□□□□ -2.17
SCN1A-221ENST00000641996 SVEP1Q4LDE5 3571 aa1.5□□□□□ -2.17
SCN1A-221ENST00000641996 KRTAP10-3P60369 221 aa1.49□□□□□ -2.17
SCN1A-221ENST00000641996 ABCA13Q86UQ4 5058 aa1.49□□□□□ -2.17
SCN1A-221ENST00000641996 DCHS1Q96JQ0 3298 aa1.49□□□□□ -2.17
SCN1A-221ENST00000641996 RPS29P62273 56 aaKnown RBP1.49□□□□□ -2.17
SCN1A-221ENST00000641996 FLGP20930 4061 aaPredicted RBP1.48□□□□□ -2.17
SCN1A-221ENST00000641996 PRKDCP78527 4128 aaKnown RBP1.47□□□□□ -2.17
SCN1A-221ENST00000641996 FAT2Q9NYQ8 4349 aa1.47□□□□□ -2.17
SCN1A-221ENST00000641996 KRTAP10-2P60368 255 aa1.47□□□□□ -2.17
SCN1A-221ENST00000641996 KRTAP1-3Q8IUG1 177 aa1.46□□□□□ -2.18
SCN1A-221ENST00000641996 KMT2CQ8NEZ4 4911 aaKnown RBP1.46□□□□□ -2.18
SCN1A-221ENST00000641996 KRTAP1-1Q07627 177 aa1.45□□□□□ -2.18
SCN1A-221ENST00000641996 DNAH2Q9P225 4427 aa1.44□□□□□ -2.18
SCN1A-221ENST00000641996 PKHD1P08F94 4074 aa1.43□□□□□ -2.18
SCN1A-221ENST00000641996 KRTAP10-10P60014 251 aa1.42□□□□□ -2.18
SCN1A-221ENST00000641996 LCE3CQ5T5A8 94 aa1.42□□□□□ -2.18
SCN1A-221ENST00000641996 KRTAP1-4P0C5Y4 121 aa1.42□□□□□ -2.18
SCN1A-221ENST00000641996 KRTAP10-5P60370 271 aa1.4□□□□□ -2.18
SCN1A-221ENST00000641996 A0A1B0GVY2 172 aa1.4□□□□□ -2.18
SCN1A-221ENST00000641996 KIAA1109Q2LD37 5005 aa1.4□□□□□ -2.19
SCN1A-221ENST00000641996 RNF213Q63HN8 5207 aa1.39□□□□□ -2.19
SCN1A-221ENST00000641996 KRTAP12-3P60328 96 aa1.39□□□□□ -2.19
SCN1A-221ENST00000641996 HERC2O95714 4834 aa1.38□□□□□ -2.19
SCN1A-221ENST00000641996 HMCN2Q8NDA2 5059 aa1.38□□□□□ -2.19
SCN1A-221ENST00000641996 CSMD2Q7Z408 3487 aa1.37□□□□□ -2.19
SCN1A-221ENST00000641996 KRTAP10-4P60372 401 aaPredicted RBP1.36□□□□□ -2.19
SCN1A-221ENST00000641996 SPRR5A0A1B0GTR4 108 aa1.35□□□□□ -2.19
SCN1A-221ENST00000641996 LCE3AQ5TA76 89 aa1.34□□□□□ -2.19
SCN1A-221ENST00000641996 DNAH1Q9P2D7 4330 aa1.34□□□□□ -2.19
SCN1A-221ENST00000641996 BIRC6Q9NR09 4857 aa1.34□□□□□ -2.2
SCN1A-221ENST00000641996 CRCT1Q9UGL9 99 aa1.34□□□□□ -2.2
SCN1A-221ENST00000641996 LCE3EQ5T5B0 92 aa1.33□□□□□ -2.2
SCN1A-221ENST00000641996 DNAH17Q9UFH2 4485 aa1.33□□□□□ -2.2
SCN1A-221ENST00000641996 DYNC2H1Q8NCM8 4307 aaKnown RBP1.32□□□□□ -2.2
SCN1A-221ENST00000641996 LCE1FQ5T754 118 aa1.32□□□□□ -2.2
SCN1A-221ENST00000641996 FAT4Q6V0I7 4981 aa1.31□□□□□ -2.2
SCN1A-221ENST00000641996 LCE1EQ5T753 118 aa1.31□□□□□ -2.2
SCN1A-221ENST00000641996 LCE5AQ5TCM9 118 aa1.31□□□□□ -2.2
SCN1A-221ENST00000641996 KRTAP12-4P60329 112 aa1.31□□□□□ -2.2
SCN1A-221ENST00000641996 LCE3DQ9BYE3 92 aa1.31□□□□□ -2.2
SCN1A-221ENST00000641996 VPS13DQ5THJ4 4388 aa1.29□□□□□ -2.2
SCN1A-221ENST00000641996 DNAH9Q9NYC9 4486 aa1.29□□□□□ -2.2
SCN1A-221ENST00000641996 KRTAP10-7P60409 375 aaPredicted RBP1.29□□□□□ -2.2
SCN1A-221ENST00000641996 DNAH11Q96DT5 4516 aa1.29□□□□□ -2.2
SCN1A-221ENST00000641996 LCE1AQ5T7P2 110 aa1.29□□□□□ -2.2
SCN1A-221ENST00000641996 HERC1Q15751 4861 aa1.28□□□□□ -2.2
SCN1A-221ENST00000641996 KRTAP10-12P60413 245 aa1.27□□□□□ -2.21
SCN1A-221ENST00000641996 ANK3Q12955 4377 aaKnown RBP1.27□□□□□ -2.21
SCN1A-221ENST00000641996 TNXBP22105 4242 aa1.26□□□□□ -2.21
SCN1A-221ENST00000641996 LCE4AQ5TA78 99 aa1.25□□□□□ -2.21
SCN1A-221ENST00000641996 USH2AO75445 5202 aa1.25□□□□□ -2.21
SCN1A-221ENST00000641996 PKHD1L1Q86WI1 4243 aa1.25□□□□□ -2.21
SCN1A-221ENST00000641996 LCE1DQ5T752 114 aa1.24□□□□□ -2.21
SCN1A-221ENST00000641996 PRM1P04553 51 aa1.24□□□□□ -2.21
SCN1A-221ENST00000641996 KRTAP9-4Q9BYQ2 154 aa1.23□□□□□ -2.21
SCN1A-221ENST00000641996 HSPG2P98160 4391 aa1.22□□□□□ -2.21
SCN1A-221ENST00000641996 DNAH10Q8IVF4 4471 aa1.21□□□□□ -2.22
SCN1A-221ENST00000641996 DNAH8Q96JB1 4490 aa1.2□□□□□ -2.22
SCN1A-221ENST00000641996 SSPOA2VEC9 5147 aa1.2□□□□□ -2.22
SCN1A-221ENST00000641996 KRTAP9-6A0A140TA67 174 aa1.2□□□□□ -2.22
SCN1A-221ENST00000641996 KRTAP9-7A8MTY7 169 aa1.2□□□□□ -2.22
SCN1A-221ENST00000641996 DYNC1H1Q14204 4646 aaKnown RBP1.19□□□□□ -2.22
SCN1A-221ENST00000641996 KRTAP2-2Q9BYT5 123 aa1.19□□□□□ -2.22
SCN1A-221ENST00000641996 HUWE1Q7Z6Z7 4374 aaKnown RBP1.18□□□□□ -2.22
SCN1A-221ENST00000641996 PLECQ15149 4684 aaKnown RBP1.18□□□□□ -2.22
SCN1A-221ENST00000641996 MUC2Q02817 5179 aa1.18□□□□□ -2.22
SCN1A-221ENST00000641996 SACSQ9NZJ4 4579 aa1.17□□□□□ -2.22
SCN1A-221ENST00000641996 KRTAP6-3Q3LI67 103 aa1.15□□□□□ -2.23
SCN1A-221ENST00000641996 KRTAP9-3Q9BYQ3 159 aa1.15□□□□□ -2.23
SCN1A-221ENST00000641996 LCE3BQ5TA77 95 aa1.14□□□□□ -2.23
SCN1A-221ENST00000641996 PKD1P98161 4303 aa1.14□□□□□ -2.23
SCN1A-221ENST00000641996 KRTAP19-5Q3LI72 72 aa1.13□□□□□ -2.23
SCN1A-221ENST00000641996 STARD9Q9P2P6 4700 aa1.12□□□□□ -2.23
SCN1A-221ENST00000641996 DNAH5Q8TE73 4624 aa1.12□□□□□ -2.23
SCN1A-221ENST00000641996 KMT2DO14686 5537 aa1.11□□□□□ -2.23
SCN1A-221ENST00000641996 KRTAP4-5Q9BYR2 181 aa1.1□□□□□ -2.23
SCN1A-221ENST00000641996 KRTAP8-1Q8IUC2 63 aa1.08□□□□□ -2.24
SCN1A-221ENST00000641996 KRTAP2-3P0C7H8 128 aa1.06□□□□□ -2.24
SCN1A-221ENST00000641996 KRTAP2-4Q9BYR9 128 aa1.06□□□□□ -2.24
SCN1A-221ENST00000641996 KRTAP2-1Q9BYU5 128 aa1.06□□□□□ -2.24
SCN1A-221ENST00000641996 MUC17Q685J3 4493 aa1.06□□□□□ -2.24
SCN1A-221ENST00000641996 LRP1BQ9NZR2 4599 aa1.04□□□□□ -2.24
SCN1A-221ENST00000641996 FAT1Q14517 4588 aa1.04□□□□□ -2.24
SCN1A-221ENST00000641996 KRTAP9-8Q9BYQ0 159 aa1.04□□□□□ -2.24
SCN1A-221ENST00000641996 APOBP04114 4563 aaKnown RBP1.04□□□□□ -2.24
SCN1A-221ENST00000641996 KRTAP9-6A8MVA2 160 aa1.04□□□□□ -2.24
SCN1A-221ENST00000641996 MYCBP2O75592 4640 aa1.04□□□□□ -2.24
SCN1A-221ENST00000641996 MT1HL1P0DM35 61 aa1.04□□□□□ -2.24
SCN1A-221ENST00000641996 LRP1Q07954 4544 aaKnown RBP1.04□□□□□ -2.24
SCN1A-221ENST00000641996 KRTAP9-2Q9BYQ4 174 aa1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms