RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 COL7A1Q02388 2944 aa2.29□□□□□ -2.04
SCN1A-210ENST00000635776 KRTAP25-1Q3LHN0 102 aa2.29□□□□□ -2.04
SCN1A-210ENST00000635776 PRKDCP78527 4128 aaKnown RBP2.29□□□□□ -2.04
SCN1A-210ENST00000635776 DNAH7Q8WXX0 4024 aa2.28□□□□□ -2.05
SCN1A-210ENST00000635776 KRTAP10-6P60371 365 aaPredicted RBP2.24□□□□□ -2.05
SCN1A-210ENST00000635776 APOBP04114 4563 aaKnown RBP2.24□□□□□ -2.05
SCN1A-210ENST00000635776 FAT2Q9NYQ8 4349 aa2.24□□□□□ -2.05
SCN1A-210ENST00000635776 KRTAP3-3Q9BYR6 98 aa2.23□□□□□ -2.05
SCN1A-210ENST00000635776 FAT1Q14517 4588 aa2.23□□□□□ -2.05
SCN1A-210ENST00000635776 HYDINQ4G0P3 5121 aa2.22□□□□□ -2.05
SCN1A-210ENST00000635776 P0C880 135 aa2.22□□□□□ -2.05
SCN1A-210ENST00000635776 PP632Q6XCG6 107 aa2.22□□□□□ -2.05
SCN1A-210ENST00000635776 KRTAP3-2Q9BYR7 98 aa2.21□□□□□ -2.06
SCN1A-210ENST00000635776 RYR3Q15413 4870 aa2.21□□□□□ -2.06
SCN1A-210ENST00000635776 KIAA1109Q2LD37 5005 aa2.2□□□□□ -2.06
SCN1A-210ENST00000635776 M0R2T5 61 aa2.19□□□□□ -2.06
SCN1A-210ENST00000635776 CSMD3Q7Z407 3707 aa2.19□□□□□ -2.06
SCN1A-210ENST00000635776 FAT3Q8TDW7 4589 aa2.19□□□□□ -2.06
SCN1A-210ENST00000635776 HECTD4Q9Y4D8 3996 aa2.19□□□□□ -2.06
SCN1A-210ENST00000635776 PLAC4Q8WY50 150 aa2.18□□□□□ -2.06
SCN1A-210ENST00000635776 PKD1P98161 4303 aa2.17□□□□□ -2.06
SCN1A-210ENST00000635776 KMT2AQ03164 3969 aa2.17□□□□□ -2.06
SCN1A-210ENST00000635776 KRTAP12-1P59990 96 aa2.17□□□□□ -2.06
SCN1A-210ENST00000635776 KRTAP13-4Q3LI77 160 aa2.16□□□□□ -2.06
SCN1A-210ENST00000635776 TNP1P09430 55 aa2.15□□□□□ -2.07
SCN1A-210ENST00000635776 KRTAP19-4Q3LI73 84 aa2.15□□□□□ -2.07
SCN1A-210ENST00000635776 BIRC6Q9NR09 4857 aa2.15□□□□□ -2.07
SCN1A-210ENST00000635776 KRTAP12-2P59991 146 aa2.14□□□□□ -2.07
SCN1A-210ENST00000635776 PKHD1L1Q86WI1 4243 aa2.14□□□□□ -2.07
SCN1A-210ENST00000635776 VPS13BQ7Z7G8 4022 aa2.14□□□□□ -2.07
SCN1A-210ENST00000635776 HSPG2P98160 4391 aa2.13□□□□□ -2.07
SCN1A-210ENST00000635776 MYCBP2O75592 4640 aa2.13□□□□□ -2.07
SCN1A-210ENST00000635776 HERC1Q15751 4861 aa2.12□□□□□ -2.07
SCN1A-210ENST00000635776 KRTAP4-5Q9BYR2 181 aa2.12□□□□□ -2.07
SCN1A-210ENST00000635776 C10orf95Q9H7T3 257 aa2.12□□□□□ -2.07
SCN1A-210ENST00000635776 KRTAP23-1A1A580 65 aa2.1□□□□□ -2.07
SCN1A-210ENST00000635776 PRO2289Q9P1D8 64 aa2.1□□□□□ -2.07
SCN1A-210ENST00000635776 LYSTQ99698 3801 aa2.1□□□□□ -2.07
SCN1A-210ENST00000635776 MT3P25713 68 aa2.1□□□□□ -2.07
SCN1A-210ENST00000635776 FRAS1Q86XX4 4008 aa2.09□□□□□ -2.07
SCN1A-210ENST00000635776 KMT2CQ8NEZ4 4911 aaKnown RBP2.09□□□□□ -2.07
SCN1A-210ENST00000635776 PKHD1P08F94 4074 aa2.09□□□□□ -2.08
SCN1A-210ENST00000635776 HERC2O95714 4834 aa2.08□□□□□ -2.08
SCN1A-210ENST00000635776 KRTAP15-1Q3LI76 137 aa2.08□□□□□ -2.08
SCN1A-210ENST00000635776 KRTAP17-1Q9BYP8 105 aa2.06□□□□□ -2.08
SCN1A-210ENST00000635776 LRP1Q07954 4544 aaKnown RBP2.06□□□□□ -2.08
SCN1A-210ENST00000635776 KRTAP10-10P60014 251 aa2.05□□□□□ -2.08
SCN1A-210ENST00000635776 ABCA13Q86UQ4 5058 aa2.03□□□□□ -2.08
SCN1A-210ENST00000635776 KRTAP4-1Q9BYQ7 146 aa2.03□□□□□ -2.08
SCN1A-210ENST00000635776 EPPK1P58107 5090 aaKnown RBP2.03□□□□□ -2.08
SCN1A-210ENST00000635776 TNXBP22105 4242 aa2.03□□□□□ -2.08
SCN1A-210ENST00000635776 SPRR2GQ9BYE4 73 aa2□□□□□ -2.09
SCN1A-210ENST00000635776 MUC17Q685J3 4493 aa1.99□□□□□ -2.09
SCN1A-210ENST00000635776 LORP23490 312 aaPredicted RBP1.98□□□□□ -2.09
SCN1A-210ENST00000635776 PCLOQ9Y6V0 5065 aa1.97□□□□□ -2.09
SCN1A-210ENST00000635776 KRTAP19-2Q3LHN2 52 aa1.97□□□□□ -2.09
SCN1A-210ENST00000635776 HMCN2Q8NDA2 5059 aa1.96□□□□□ -2.1
SCN1A-210ENST00000635776 MT1HP80294 61 aa1.95□□□□□ -2.1
SCN1A-210ENST00000635776 LRP2P98164 4655 aa1.95□□□□□ -2.1
SCN1A-210ENST00000635776 RNF213Q63HN8 5207 aa1.94□□□□□ -2.1
SCN1A-210ENST00000635776 INE1O15225 51 aa1.94□□□□□ -2.1
SCN1A-210ENST00000635776 MT2AP02795 61 aa1.92□□□□□ -2.1
SCN1A-210ENST00000635776 KRTAP19-8Q3LI54 63 aa1.92□□□□□ -2.1
SCN1A-210ENST00000635776 LCE2CQ5TA81 110 aa1.91□□□□□ -2.1
SCN1A-210ENST00000635776 KRTAP19-1Q8IUB9 90 aa1.89□□□□□ -2.11
SCN1A-210ENST00000635776 UBR4Q5T4S7 5183 aa1.89□□□□□ -2.11
SCN1A-210ENST00000635776 SPRR5A0A1B0GTR4 108 aa1.88□□□□□ -2.11
SCN1A-210ENST00000635776 MT1FP04733 61 aa1.88□□□□□ -2.11
SCN1A-210ENST00000635776 KRTAP10-12P60413 245 aa1.88□□□□□ -2.11
SCN1A-210ENST00000635776 KRTAP8-1Q8IUC2 63 aa1.86□□□□□ -2.11
SCN1A-210ENST00000635776 KRTAP9-8Q9BYQ0 159 aa1.85□□□□□ -2.11
SCN1A-210ENST00000635776 KRTAP12-3P60328 96 aa1.84□□□□□ -2.11
SCN1A-210ENST00000635776 LCE3AQ5TA76 89 aa1.84□□□□□ -2.12
SCN1A-210ENST00000635776 LPAP08519 4548 aa1.83□□□□□ -2.12
SCN1A-210ENST00000635776 FLGP20930 4061 aaPredicted RBP1.82□□□□□ -2.12
SCN1A-210ENST00000635776 FAT4Q6V0I7 4981 aa1.82□□□□□ -2.12
SCN1A-210ENST00000635776 MT1BP07438 61 aa1.81□□□□□ -2.12
SCN1A-210ENST00000635776 KRTAP9-3Q9BYQ3 159 aa1.8□□□□□ -2.12
SCN1A-210ENST00000635776 MT1XP80297 61 aa1.78□□□□□ -2.12
SCN1A-210ENST00000635776 KRTAP10-5P60370 271 aa1.78□□□□□ -2.12
SCN1A-210ENST00000635776 LCE2AQ5TA79 106 aaPredicted RBP1.73□□□□□ -2.13
SCN1A-210ENST00000635776 KRTAP10-7P60409 375 aaPredicted RBP1.7□□□□□ -2.14
SCN1A-210ENST00000635776 LCE3CQ5T5A8 94 aa1.69□□□□□ -2.14
SCN1A-210ENST00000635776 USH2AO75445 5202 aa1.69□□□□□ -2.14
SCN1A-210ENST00000635776 KRTAP19-5Q3LI72 72 aa1.68□□□□□ -2.14
SCN1A-210ENST00000635776 LCE2BO14633 110 aa1.68□□□□□ -2.14
SCN1A-210ENST00000635776 MUC2Q02817 5179 aa1.67□□□□□ -2.14
SCN1A-210ENST00000635776 KRTAP19-6Q3LI70 58 aa1.66□□□□□ -2.14
SCN1A-210ENST00000635776 LCE2DQ5TA82 110 aaPredicted RBP1.63□□□□□ -2.15
SCN1A-210ENST00000635776 MT1GP13640 62 aa1.6□□□□□ -2.15
SCN1A-210ENST00000635776 MT1EP04732 61 aa1.59□□□□□ -2.16
SCN1A-210ENST00000635776 CRCT1Q9UGL9 99 aa1.58□□□□□ -2.16
SCN1A-210ENST00000635776 MT1LQ93083 61 aa1.58□□□□□ -2.16
SCN1A-210ENST00000635776 KRTAP19-7Q3SYF9 63 aa1.57□□□□□ -2.16
SCN1A-210ENST00000635776 KRTAP4-8A0A0G2JLE6 195 aa1.56□□□□□ -2.16
SCN1A-210ENST00000635776 KRTAP4-8Q9BYQ9 185 aa1.56□□□□□ -2.16
SCN1A-210ENST00000635776 SSPOA2VEC9 5147 aa1.55□□□□□ -2.16
SCN1A-210ENST00000635776 KRTAP19-3Q7Z4W3 81 aa1.55□□□□□ -2.16
SCN1A-210ENST00000635776 SPRR2FQ96RM1 72 aa1.53□□□□□ -2.16
SCN1A-210ENST00000635776 KRTAP2-3P0C7H8 128 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms